Factsheet for AT2G35340.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G32490.1	Thale cress	cytosol	83.43	83.43
Os08t0335000-00	Rice	cytosol, nucleus	27.78	79.02
GSMUA_Achr4P23370_001	Banana	nucleus	52.68	73.33
Zm00001d049980_P001	Maize	plasma membrane	47.7	71.35
TraesCS4B01G374800.1	Wheat	nucleus	68.49	68.36
TraesCS4D01G362600.1	Wheat	nucleus	68.39	68.26
KXG30390	Sorghum	nucleus	68.2	68.07
EES02741	Sorghum	nucleus	68.2	68.07
HORVU4Hr1G088270.17	Barley	mitochondrion	65.23	63.06
AT4G16680.2	Thale cress	nucleus	47.8	62.69
AT3G62310.1	Thale cress	nucleus	32.85	47.25
AT2G47250.1	Thale cress	nucleus	32.66	46.78
AT4G18465.1	Thale cress	nucleus	30.08	45.18
AT1G26370.1	Thale cress	plastid	29.02	42.26
AT1G27900.1	Thale cress	nucleus	26.82	40.0
AT5G14900.1	Thale cress	cytosol	10.82	37.54
AT3G26560.1	Thale cress	nucleus	40.04	35.79
AT5G13010.1	Thale cress	nucleus	35.82	29.8
AT2G35920.3	Thale cress	plastid	23.28	23.66
AT2G01130.1	Thale cress	nucleus	22.7	21.29
AT1G33390.2	Thale cress	nucleus	25.1	21.18
AT1G48650.2	Thale cress	nucleus, plastid	23.85	20.65
AT5G04895.1	Thale cress	mitochondrion	22.13	19.9
AT1G58060.1	Thale cress	nucleus	24.52	17.55
AT1G58050.1	Thale cress	nucleus	23.37	17.22
AT2G30800.1	Thale cress	nucleus	20.5	16.47
AT1G06670.1	Thale cress	nucleus	21.07	13.96
AT5G10370.1	Thale cress	nucleus	23.08	13.58
AT4G01020.1	Thale cress	nucleus	22.99	13.43

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.1.5	Gene3D:3.40.50.300	EntrezGene:818101	ProteinID:AAC36188.1	ProteinID:AEC09096.1
EMBL:AK226760	ArrayExpress:AT2G35340	EnsemblPlantsGene:AT2G35340	RefSeq:AT2G35340	TAIR:AT2G35340	RefSeq:AT2G35340-TAIR-G
EnsemblPlants:AT2G35340.1	TAIR:AT2G35340.1	Unigene:At.53041	ncoils:Coil	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605
UniProt:F4IJV4	GO:GO:0000003	GO:GO:0000166	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005737
GO:GO:0006139	GO:GO:0006397	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	Symbol:MEE29	RefSeq:NP_181077.3
InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	PO:PO:0000005	PO:PO:0000013
PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	ScanProsite:PS00690	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF117	SMART:SM00487	SMART:SM00490	SMART:SM00847
SUPFAM:SSF52540	UniParc:UPI0001505895	SEG:seg	:	:	:

Description

MEE29Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 [Source:UniProtKB/Swiss-Prot;Acc:F4IJV4]

Coordinates

chr2:+:14872265..14879739

Molecular Weight (calculated)

119134.0 Da

IEP (calculated)

6.053

GRAVY (calculated)

-0.586

Length

1044 amino acids

Sequence
(BLAST)

0001: MGSNDLNTWV SDKLMVLLGF SQTAVVQYLI AMAKQSKSPG ELVRELVECG FSLSGDTRAF AEEIYARAPR KTPGVNLYQQ QEAEAAMLLK KQKTFSLLEA
0101: DHDEDENNVK KQSASKTGKS DKGQKRFRKK SEQLEDDDDE VVIVREDKRN VRRKVSEDED DGTESEEERL RDQREREELE QHLRERDTAR TRKLTEPKMS
0201: KKEQEEFVRR DSAVDKGDIE SLRKFSWQEY MKKRKQKKVL ELKDDIEDEP YLFGDEKLTE REIREFRYKR EIYELIKKST QEEDNVGEYR MPDAYDQQGS
0301: VDQEKRFAVS VQRYRDMGSA EKMNPFAEQE AWEDHQIENA ALKFGAKNKE VSDNYEFVFE DQIDFIKASV LAGDNYEDEM HAKPSQDSAG KSAFHMLQED
0401: RKALPIYTYR DQLLNAVKDH QVLIIVGETG SGKTTQIPQY LHEAGYTKLG KVGCTQPRRV AAMSVAARVA QEMGGKLGHE VGYSIRFEDC TSEKTILKYM
0501: TDGMLLRELL GEPDLGSYSV IIVDEAHERT LRTDILFGLV KDIARARPDL KLLISSATMD AEKFSDFFDQ APIFRFPGRR YPVDICFTTA PEADYMDAAI
0601: TTVLTIHVKE PLGDVLVFLP GQEEIEAVEE NLKHKIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK
0701: MKSYNPRTGM ESLLVTPISK ASATQRTGRA GRTSPGKCYR LYTAFNYYND LEDNTVPEIQ RTNLASVVLS LKSLGIHNLL NFDFMDPPPS EALIKSLELL
0801: FALGALNQLG ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGPSIFYR PKDKQVHADN AMKNFHVGNV GDHIAFLKIY NSWKETNYST
0901: QWCYENYIQV RSMKRARDIR DQLEGLLERV EIDVSSNANE LDSIRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPAS GLSQVLPRWV VYHQLVLTSK
1001: EYMRQVTELK PEWLIEIAPH YYQLKDVEDA TSKKMPKTSG RAVV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.