Factsheet for AT1G33390.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34159	Canola	nucleus	75.91	75.91
CDY48353	Canola	nucleus	74.78	75.63
Bra032998.1-P	Field mustard	nucleus	75.51	75.51
VIT_07s0005g00860.t01	Wine grape	nucleus	57.96	54.28
Solyc01g095710.2.1	Tomato	nucleus	55.13	50.86
PGSC0003DMT400000297	Potato	nucleus	54.81	50.75
GSMUA_Achr3P08220_001	Banana	nucleus	43.98	50.6
KRH76262	Soybean	nucleus	53.03	49.66
KRH65271	Soybean	nucleus	52.87	49.47
Os02t0736600-01	Rice	nucleus	49.47	48.11
KXG30805	Sorghum	nucleus	49.23	47.73
Zm00001d017967_P003	Maize	nucleus	48.26	46.68
HORVU0Hr1G039590.6	Barley	nucleus	48.1	46.23
TraesCS6B01G206600.1	Wheat	nucleus	47.78	45.96
TraesCS6A01G178200.1	Wheat	nucleus	44.95	45.24
TraesCS6D01G279300.1	Wheat	nucleus	48.1	44.87
TraesCS6B01G329000.1	Wheat	nucleus	47.7	44.73
TraesCS6A01G299400.2	Wheat	nucleus	47.94	44.72
AT3G62310.1	Thale cress	nucleus	19.81	33.75
AT2G47250.1	Thale cress	nucleus	19.56	33.2
AT1G27900.1	Thale cress	nucleus	18.19	32.14
AT4G16680.2	Thale cress	nucleus	20.45	31.78
AT4G18465.1	Thale cress	nucleus	17.62	31.37
AT1G26370.1	Thale cress	plastid	17.95	30.96
AT1G32490.1	Thale cress	cytosol	21.42	25.38
AT2G35340.1	Thale cress	endoplasmic reticulum, nucleus	21.18	25.1
AT5G14900.1	Thale cress	cytosol	5.74	23.59
AT3G26560.1	Thale cress	nucleus	21.42	22.69
AT5G13010.1	Thale cress	nucleus	21.42	21.12
AT2G35920.3	Thale cress	plastid	16.73	20.16
AT2G01130.1	Thale cress	nucleus	18.03	20.04
AT5G04895.1	Thale cress	mitochondrion	17.87	19.04
AT1G48650.2	Thale cress	nucleus, plastid	17.7	18.16
AT1G58050.1	Thale cress	nucleus	17.79	15.53
AT1G58060.1	Thale cress	nucleus	17.87	15.15
AT2G30800.1	Thale cress	nucleus	15.6	14.86
AT1G06670.1	Thale cress	nucleus	16.41	12.88
AT5G10370.1	Thale cress	nucleus	18.03	12.56
AT4G01020.1	Thale cress	nucleus	17.38	12.03
Os02t0736800-01	Rice	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:840232	UniProt:A0A178WIP4	ProteinID:AAG51220.1
ProteinID:AAG51287.1	ProteinID:AEE31588.1	EMBL:AK227299	ProteinID:ANM58243.1	ArrayExpress:AT1G33390	EnsemblPlantsGene:AT1G33390
RefSeq:AT1G33390	TAIR:AT1G33390	RefSeq:AT1G33390-TAIR-G	EnsemblPlants:AT1G33390.2	Symbol:ATFAS4	Unigene:At.39951
ncoils:Coil	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	RefSeq:NP_001320693.1	RefSeq:NP_174605.1	ProteinID:OAP18230.1
InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF99	UniProt:Q9C813	SMART:SM00487	SMART:SM00490
SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI00000A073B	SEG:seg	:	:

Description

FAS4FAS4 [Source:UniProtKB/TrEMBL;Acc:A0A178WIP4]

Coordinates

chr1:-:12099482..12104660

Molecular Weight (calculated)

139153.0 Da

IEP (calculated)

5.906

GRAVY (calculated)

-0.499

Length

1237 amino acids

Sequence
(BLAST)

0001: MASVVGDDCN LDVMPPRKKK NKGSNKMQDK LNSNNNTGSK KSRKRKLNSN VNTVACKSQK RKLKKLEEDK EKEILFSKTA ELLDKYKISE DVSSLLQSSK
0101: VIGRSATKLE KRRRAMQLSK AGVETEHSDE SVEQNDNDDD SCMDEPTTPE HVEIETPTFV TDSEQQLVHA DLMISAEESS SKLEVDDTVD MIPLTTCRDD
0201: DEDSMDGLIE NEDVTVQGPR VPAFVVHVSR PAEVEETRKD LPIVMMEQEI MEAINRHPAV IISGQTGCGK TTQVPQFLYE AGFGSKQFSS RSGIIGITQP
0301: RRVAVLATAK RVAFELGVRL GKEVGFQVRY DKKIGENSSI KFMTDGILLR EIQNDFLLRR YSVIILDEAH ERSLNTDILI GMLTRVIKIR QEYYEEQQKS
0401: LQSGGTVTSE CQITPLKLIL MSATLRVEDF VSGKRLFPNI PPLIEVPTRQ YPVTIHFSKK TEIVDYIGEA YKKVMSIHKK LPQGGILVFV TGQREVDYLC
0501: EKLRKSSKEL VVQAAKRDAY VKKKCDDGSF GGVDMKEIAE AFDDDSNNQN SRFSSHGEDP SDIGDGNYDD DFEEEDMYES DEDRDWETVD DGFASSFVEE
0601: GKLDALRAAF NALADKNGSV SAEPAKSIAA ENQEAEQVKN KFSPGKLRVL PLYAMLSPAA QLRVFEEVEK EERLVVVATN VAETSLTIPG IKYVVDTGRV
0701: KVKNYDSKTG MESYEVDWIS QASASQRAGR AGRTGPGHCY RLYSSAVFSN IFEESSLPEI MKVPVDGVIL LMKSMNIPKV ENFPFPTPPE PSAIREAERC
0801: LKALEALDSN GGLTPLGKAM SHYPMSPRHS RMLLTVIQML KETRNYSRAN LILGYAVAAV AALSLPNPLI MEFEGEKKNE SKDADKTVKQ EDKQRKKDRK
0901: EKIKAARDRF SNPSSDALTV AYALHSFEVS ENGMGFCEAN GLHLKTMDEM SKLKDQLLRL VFNCCKPSET EDSFSWTHGT IQDVEKSWRI TTSTSSKTPL
1001: LQNEEELLGE AICAGWADRV ARKTRATEYQ ACAVQEPVFL HRWSSLINSA PELLVYSELL LTNRPYMHGA TRVRPEWLVK HAKSLCVFSA PLKDPKPYYS
1101: SEEDRVLCWV VPSFGPHNWE LPAHSVAITE DRDRAAAFGC ALLQGEVLTC LKSFRALLAG KPETLLEREA WGLERVGSLV MVLTEKKIDT LESLRKNWEQ
1201: NPNVLYSEIE VWFQKKFRHR VKDLWQTMLK EAHVRRS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.