Factsheet for AT5G13010.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85676	Canola	nucleus	89.8	90.3
Bra023387.1-P	Field mustard	nucleus	89.72	90.22
CDX91151	Canola	nucleus	89.16	89.59
VIT_01s0010g02920.t01	Wine grape	nucleus	61.99	88.91
CDY23802	Canola	nucleus	33.78	80.76
Solyc12g089010.1.1	Tomato	nucleus	51.39	79.63
Solyc10g076910.1.1	Tomato	nucleus	77.53	75.72
KRH23170	Soybean	nucleus	76.65	75.69
TraesCS3D01G264900.1	Wheat	plastid	55.54	75.68
KRH10165	Soybean	nucleus	76.65	75.63
PGSC0003DMT400018531	Potato	nucleus	77.29	75.49
PGSC0003DMT400039875	Potato	nucleus	54.26	73.78
TraesCS2B01G249700.1	Wheat	nucleus	72.11	71.65
HORVU2Hr1G047870.2	Barley	nucleus	72.03	71.58
TraesCS2A01G233700.1	Wheat	nucleus	71.71	71.26
Os07t0508000-01	Rice	nucleus	71.55	70.16
KXG36287	Sorghum	nucleus	71.79	70.12
Zm00001d006459_P003	Maize	plastid	70.84	66.05
TraesCS2D01G231900.1	Wheat	nucleus	71.87	64.29
AT4G16680.2	Thale cress	nucleus	26.85	42.34
AT4G18465.1	Thale cress	nucleus	22.63	40.86
AT3G62310.1	Thale cress	nucleus	23.43	40.5
AT1G27900.1	Thale cress	nucleus	22.31	40.0
AT2G47250.1	Thale cress	nucleus	23.19	39.92
AT1G26370.1	Thale cress	plastid	21.59	37.8
AT1G32490.1	Thale cress	cytosol	31.0	37.26
AT3G26560.1	Thale cress	nucleus	34.18	36.73
AT2G35340.1	Thale cress	endoplasmic reticulum, nucleus	29.8	35.82
AT5G14900.1	Thale cress	cytosol	7.89	32.89
AT2G35920.3	Thale cress	plastid	19.12	23.37
AT1G48650.2	Thale cress	nucleus, plastid	21.59	22.47
AT2G01130.1	Thale cress	nucleus	19.76	22.28
AT5G04895.1	Thale cress	mitochondrion	20.16	21.79
AT1G33390.2	Thale cress	nucleus	21.12	21.42
AT2G30800.1	Thale cress	nucleus	17.69	17.09
AT1G58060.1	Thale cress	nucleus	19.28	16.59
AT1G58050.1	Thale cress	nucleus	18.33	16.23
AT5G10370.1	Thale cress	nucleus	19.44	13.75
AT4G01020.1	Thale cress	nucleus	19.44	13.65
AT1G06670.1	Thale cress	nucleus	16.97	13.52

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.1.6	Gene3D:3.40.50.300	EntrezGene:831141	ProteinID:AED91841.1	ArrayExpress:AT5G13010
EnsemblPlantsGene:AT5G13010	RefSeq:AT5G13010	TAIR:AT5G13010	RefSeq:AT5G13010-TAIR-G	EnsemblPlants:AT5G13010.1	TAIR:AT5G13010.1
Unigene:At.5294	ProteinID:CAB88265.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605	Symbol:EMB3011
UniProt:F4K2E9	GO:GO:0000003	GO:GO:0000166	GO:GO:0000398	GO:GO:0002376	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006397	GO:GO:0006412
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058
GO:GO:0009605	GO:GO:0009607	GO:GO:0009653	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009817	GO:GO:0009987	GO:GO:0010051	GO:GO:0010467	GO:GO:0016049	GO:GO:0016246
GO:GO:0016787	GO:GO:0019538	GO:GO:0030154	GO:GO:0031047	GO:GO:0031053	GO:GO:0033120
GO:GO:0040007	GO:GO:0040029	GO:GO:0045087	GO:GO:0048364	GO:GO:0048767	InterPro:Helicase-assoc_dom
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	RefSeq:NP_196805.2	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	PO:PO:0000013	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF91
SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI0001E93049	SEG:seg

Description

CUVPre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Source:UniProtKB/Swiss-Prot;Acc:F4K2E9]

Coordinates

chr5:+:4122400..4129005

Molecular Weight (calculated)

141868.0 Da

IEP (calculated)

6.603

GRAVY (calculated)

-0.682

Length

1255 amino acids

Sequence
(BLAST)

0001: MGVDPFKTTE TLEADKETNG GVPVKDKLTF KAPERKSRLG LDARAIEKKD NAKTEGEFKV PKKSAISVTS SLDEEDKSDV SGLDFGTENT RPVHSSRRYR
0101: EKSSRSQSAQ ESTVTTENAG TSDISITPRT LSCTSSYERG GSNRHREEHR RDRSETPRSR QRNTYDEMDH YRRRESYRQS DRDYHGEKRR RYNSDWRTPG
0201: RSDWDDGQDE WERSPHGDRG SSYSRRPQPS PSPMLAAASP DARLASPWLD TPRSTMSSAS PWDMGAPSPI PIRASGSSIR SSSSRYGGRS NQLAYSREGD
0301: LTNEGHSDED RSQGAEEFKH EITETMRVEM EYQSDRAWYD TDEGNSLFDA DSASFFLGDD ASLQKKETEL AKRLVRRDGS KMSLAQSKKY SQLNADNAQW
0401: EDRQLLRSGA VRGTEVQTEF DSEEERKAIL LVHDTKPPFL DGRVVYTKQA EPVMPVKDPT SDMAIISRKG SGLVKEIREK QSANKSRQRF WELAGSNLGN
0501: ILGIEKSAEQ IDADTAVVGD DGEVDFKGEA KFAQHMKKGE AVSEFAMSKT MAEQRQYLPI FSVRDELLQV IRENQVIVVV GETGSGKTTQ LTQYLHEDGY
0601: TINGIVGCTQ PRRVAAMSVA KRVSEEMETE LGDKIGYAIR FEDVTGPNTV IKYMTDGVLL RETLKDSDLD KYRVVVMDEA HERSLNTDVL FGILKKVVAR
0701: RRDFKLIVTS ATLNAQKFSN FFGSVPIFNI PGRTFPVNIL YSKTPCEDYV EAAVKQAMTI HITSPPGDIL IFMTGQDEIE AACFSLKERM EQLVSSSSRE
0801: ITNLLILPIY SQLPADLQAK IFQKPEDGAR KCIVATNIAE TSLTVDGIYY VIDTGYGKMK VFNPRMGMDA LQVFPISRAA SDQRAGRAGR TGPGTCYRLY
0901: TESAYLNEML PSPVPEIQRT NLGNVVLLLK SLKIDNLLDF DFMDPPPQEN ILNSMYQLWV LGALNNVGGL TDLGWKMVEF PLDPPLAKML LMGERLDCID
1001: EVLTIVSMLS VPSVFFRPKE RAEESDAARE KFFVPESDHL TLLNVYQQWK EHDYRGDWCN DHYLQVKGLR KAREVRSQLL DILKQLKIEL RSCGPDWDIV
1101: RKAICSAYFH NSARLKGVGE YVNCRTGMPC HLHPSSALYG LGYTPDYVVY HELILTTKEY MQCATSVEPH WLAELGPMFF SVKDSDTSML EHKKKQKEEK
1201: SGMEEEMEKL RRDQVESELR SKERERKKRA KQQQQISGPG LKKGTTFLRP KKLGL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.