Factsheet for AT1G58050.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G58060.1	Thale cress	nucleus	76.64	74.43
CDY63687	Canola	nucleus, plastid	52.86	67.48
Os04t0432200-00	Rice	extracellular	3.11	60.27
VIT_12s0035g00800.t01	Wine grape	nucleus	56.53	58.51
KRH01863	Soybean	nucleus	57.73	56.88
Solyc01g103690.2.1	Tomato	nucleus	57.3	56.47
GSMUA_Achr6P17860_001	Banana	nucleus	51.45	51.23
Zm00001d003655_P006	Maize	nucleus, plastid	49.12	48.88
KXG26332	Sorghum	nucleus, plastid	48.91	48.6
TraesCS2B01G320800.1	Wheat	nucleus, plastid	48.77	48.39
TraesCS2A01G304100.1	Wheat	nucleus, plastid	48.77	48.36
TraesCS2D01G302700.1	Wheat	plastid	48.27	47.87
AT2G35920.3	Thale cress	plastid	25.48	35.15
AT1G26370.1	Thale cress	plastid	15.74	31.1
AT4G18465.1	Thale cress	nucleus	14.75	30.07
AT2G01130.1	Thale cress	nucleus	23.57	30.01
AT2G47250.1	Thale cress	nucleus	15.03	29.22
AT3G62310.1	Thale cress	nucleus	14.61	28.51
AT4G16680.2	Thale cress	nucleus	15.95	28.39
AT5G04895.1	Thale cress	mitochondrion	23.15	28.25
AT1G27900.1	Thale cress	nucleus	13.69	27.71
AT1G48650.2	Thale cress	nucleus, plastid	23.43	27.53
AT1G32490.1	Thale cress	cytosol	17.29	23.47
AT2G35340.1	Thale cress	endoplasmic reticulum, nucleus	17.22	23.37
AT2G30800.1	Thale cress	nucleus	20.61	22.48
AT5G14900.1	Thale cress	cytosol	4.38	20.6
AT3G26560.1	Thale cress	nucleus	16.8	20.38
AT5G13010.1	Thale cress	nucleus	16.23	18.33
AT1G33390.2	Thale cress	nucleus	15.53	17.79
AT1G06670.1	Thale cress	nucleus	19.62	17.64
AT5G10370.1	Thale cress	nucleus	17.15	13.69
AT4G01020.1	Thale cress	nucleus	16.94	13.43

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:842172	ProteinID:AAG50700.1	ProteinID:AEE33491.1
ArrayExpress:AT1G58050	EnsemblPlantsGene:AT1G58050	RefSeq:AT1G58050	TAIR:AT1G58050	RefSeq:AT1G58050-TAIR-G	EnsemblPlants:AT1G58050.1
TAIR:AT1G58050.1	Unigene:At.52250	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	RefSeq:NP_176102.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	PO:PO:0000005	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF190
UniProt:Q9C6G0	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI00000A9665
SEG:seg	:	:	:	:	:

Description

DExH-box ATP-dependent RNA helicase DExH4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6G0]

Coordinates

chr1:-:21478590..21487839

Molecular Weight (calculated)

159348.0 Da

IEP (calculated)

7.564

GRAVY (calculated)

-0.361

Length

1417 amino acids

Sequence
(BLAST)

0001: MAPTKKPQKN KQSKNEIASS LIPNSGHKKP SKAPKLLISP ENEDRLRRLL LNFRRTPSPV TATLSVTQKR KKLNNLYENL SCEGFLDNQI ELVLSSLRDG
0101: ATLETALDWL CLNLPSHELP VNFSNGASRF PSTGRSVAVI SKSKKDWNVS AESSVQEVKE VPESEVLVRV KSKRDEEEED SLSSCQPSQA DWIHQYMKRL
0201: EEEELESSDD ERDKVSGPRS FEVIAKEYCV ERYNAIKAKR KGDKSGQSQA GLAICKLKEE MNALGPSEAI LESEFQRDRQ DCEGAREKEV ASSVLDDVHE
0301: SVNADAFFFQ LFDDLTLDTN PVGSCKSEEQ ESVVSNDSLD DLDLGDLFDE DVPPYVPSPH ELLELQKKEI MRELCNEKHL TKLNGIWKKG EAQKIPKALL
0401: HQLCQRSGWI APKFNKVTGE GRNFSYTTSV MRKSSGFGKS RQAGGLVTIQ LPHQVEDFES IQDAQNRVAA FALHKLFSDL PVHFAITEPY ASLVLIWKQE
0501: ESLGITSREE QRREKFVESL LEADNFSLTT TSRGIHSALP MVDSCVKEND DLDVVKSNHR ARRNSSMAAE CSSLKQKQEN KKKMQKYKDM LKTRAALPIS
0601: EVKKDILQKL KEKDVLVVCG ETGSGKTTQV PQFILDDMID SGHGGYCNII CTQPRAITVA QRVADERCEP PPGFDNSVVA YQVRHQNARS DKTRLLFCTT
0701: GILLRKLVGD TTLKDVTHII VDEVHERSLM GDFLLIILKS LIEKQSWDNA LPKLKVILMS ATVDAHQFSR YFGQCPIITA QGRTHPVTTY FLEDIYERTK
0801: YLLASDSPAA LSSDTSITDK LGSVNVPRGK KNLMLAGWGD SYLVSEDSLN TSYDSIKYIA SAVVDYDLLE ELICHIDDTC EEGAILVFLP GMSEINMLLN
0901: RLAASYRFRG ASGDWLLPLH SSIASTEQKK VFLRPPKGIR KVIIATNIAE TSITIEDVVY VIDSGKHKEN RYNPHKKLSS MVEDWVSKAN ARQRMGRAGR
1001: VKPGHCFSLY TRHRFEKLMR PYQVPEMLRV PLVELCLHIK LLGLGQIKPF LSKALEPPSE SAINSAILLL HKVGALEGDE ELTPLGHHLA KLPVDLLIGK
1101: MLLYGGIFGC LSPILSIAAF LSCCKSPFVY AKDEQNVDRV KLALLSDKLE SSSNLNNNDR QSDHLLMVVA YEKWVRILHE QGFKAAESFC ESKFLNSSVM
1201: RMMRERRVEF GMLLADIGLI NLPKGKGRRK ENFDVWFSDK TQPFNMYSQE PEVVKAILCA GLCPNIAEGL VNRLTKPAEE TQRYAVWHDG KREVHIHRNS
1301: INKNCKAFQY PFIVFLEKLE TKKVVYLQDT TVVSPFSILL FGGSINVHHQ SGSVTIDGWL KLTAPAQTAV LFKELRLTLH SILKDLIRKP EKSGIVHNEV
1401: VKSMVHLLIE EGKPQHT

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.