Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0035g00800.t01 | Wine grape | nucleus | 63.84 | 67.06 |
| KRH01863 | Soybean | nucleus | 63.77 | 63.77 |
| AT1G58060.1 | Thale cress | nucleus | 63.56 | 62.65 |
| CDY39917 | Canola | nucleus | 60.71 | 61.78 |
| Os04t0432200-00 | Rice | extracellular | 3.13 | 61.64 |
| CDY29164 | Canola | nucleus | 60.92 | 61.52 |
| Bra027890.1-P | Field mustard | nucleus | 55.22 | 59.7 |
| AT1G58050.1 | Thale cress | nucleus | 56.47 | 57.3 |
| GSMUA_Achr6P17860_001 | Banana | nucleus | 55.01 | 55.59 |
| KXG26332 | Sorghum | nucleus, plastid | 54.73 | 55.19 |
| TraesCS2A01G304100.1 | Wheat | nucleus, plastid | 54.52 | 54.86 |
| TraesCS2B01G320800.1 | Wheat | nucleus, plastid | 54.45 | 54.83 |
| Zm00001d003655_P006 | Maize | nucleus, plastid | 54.24 | 54.78 |
| TraesCS2D01G302700.1 | Wheat | plastid | 54.03 | 54.37 |
| CDY63687 | Canola | nucleus, plastid | 38.18 | 49.46 |
| Solyc01g006970.2.1 | Tomato | nucleus | 25.73 | 35.89 |
| Solyc04g007510.2.1 | Tomato | plastid | 25.38 | 31.63 |
| Solyc01g006710.2.1 | Tomato | mitochondrion | 25.45 | 31.44 |
| Solyc01g079250.2.1 | Tomato | nucleus | 15.79 | 31.4 |
| Solyc09g097820.2.1 | Tomato | nucleus | 15.02 | 31.17 |
| Solyc03g118920.2.1 | Tomato | mitochondrion, nucleus | 25.45 | 30.47 |
| Solyc05g015040.2.1 | Tomato | nucleus | 14.81 | 30.43 |
| Solyc09g008120.2.1 | Tomato | nucleus | 14.67 | 29.68 |
| Solyc07g044930.2.1 | Tomato | nucleus | 23.23 | 27.86 |
| Solyc03g115390.2.1 | Tomato | nucleus | 17.25 | 27.28 |
| Solyc12g089010.1.1 | Tomato | nucleus | 14.88 | 26.42 |
| Solyc12g017700.1.1 | Tomato | nucleus | 15.51 | 25.17 |
| Solyc01g110990.2.1 | Tomato | nucleus | 16.9 | 21.87 |
| Solyc07g039550.2.1 | Tomato | nucleus | 17.18 | 20.76 |
| Solyc10g076910.1.1 | Tomato | nucleus | 15.86 | 17.74 |
| Solyc01g095710.2.1 | Tomato | nucleus | 14.95 | 16.03 |
| Solyc11g010310.1.1 | Tomato | nucleus | 16.06 | 13.55 |
| Solyc04g014210.2.1 | Tomato | nucleus | 15.58 | 12.95 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS |
| InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | UniProt:K4B1U4 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 |
| PFAM:PF07717 | ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF190 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc01g103690.2 | EnsemblPlants:Solyc01g103690.2.1 |
| UniParc:UPI0002768412 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:92232520..92261168
Molecular Weight (calculated)
160292.0 Da
IEP (calculated)
6.210
GRAVY (calculated)
-0.387
Length
1438 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAPKKKPQSS KGKGSSSTGP KLQISAEDEN RLRRLLLNSG HSTQSPTPIP AEDALSKAQK AKKLRSIYEK LSCEGFSNNQ IELALSALKE RATFEAALDW
0101: LCLNLRGNEL PLKFSSGTSQ SNEGSVGIIS TARQDWVPSA DSSVAEVKEE KIPTVSVVPK GRSDSEFLRT VERAQADWIR QYMEQQEEDE AESWESGFSD
0201: DGSLEQVPRK KRSVESIVQE FHTARLEAIH AKERGDKKGQ EQASRIIRKI KQEISSLGLP DDILESAHES ASDHAVLDRS SEKLDVDDVT SPNFRTSDIH
0301: EHEIGMDEVS VNNSSNEFIE NNPSSVPLGD KAASGGEPED VELGDFLFEE DSSADVLATV LELQKKEKMR ELCSQKNLEK LEGIWKKGDP QKIPKAFLHQ
0401: LCQRSGWEAP KYAKIPGKGN LTSYSVSIMR KASGRGKSRK AGGLVTMELP SQDHASSTAE DAQNRVAAYA LHRLFPDLPV HMPITEPYAS LILQWEEGDS
0501: VKDIVDDQVE RRAYFVDSLL DASGSETITL SDVSNNASKE KFLHPHTTED KTVPVDYTAK NPLKEAESLS LKKEQEGRKK LKKYQEMLKS RAALPIADLK
0601: GEILHSLEEN DVLVICGETG CGKTTQVPQF ILDDMIESGR GGHCNIICTQ PRRIAATSVA ERVADERCES SPGSSESLVG YQVRLDSARN ERTKLLFCTT
0701: GILLRMFSGN KSLAGVSHII VDEVHERSLL GDFLLIVLKS LIQMQSALGT AKLKVILMSA TVDSHLFSHY FGNCPVITAQ GRTHPVSTYF LEDIYESINY
0801: RLASDSPASL SYGTSTREKN APIGNHRGKK NLVLSAWGDE SLLSEEYINP YYDSSNYQNY SGQTQKNLRK LNEDIIDYDL LEDLVCYIDE TYPDGAILVF
0901: LPGVAEINTL FDRLSVSFQF SGQSSEWILP LHSSVASEDQ KKVFMRPPEN IRKVIIATNI AETSITIDDV VYVVDCGKHK ENRYNPKKKL SSMVEDWISQ
1001: ANARQCRGRA GRVKPGICFC LYTSYRYEKL MRPYQIPEML RMPLVELCLQ IKLLSLGSIK LFLSMALEPP KDEAIMSAIS LLYEVGAVEG NEELTPLGYH
1101: LARLPVDVLV GKMLLYGGVF GCLSPILSIS AFLSYKSPFV YPKDERQNVE RAKLALLSDK LGCETDSDSG NWQSDHLLMM VAYKKWEKIL REKGVKAAKQ
1201: FCSSYFLSSS VMYMIRDMRV QFGTLLADIG LINLPKKSEV DWKKKEKLGS WLSDISQPFN INSNHSSVLK AILCAGLYPN VSAREEGIAT TALGNLKQSA
1301: NNSAKSNPAW YDGKREVHIH PSSINSDLKA FQYPFLVFLE KVETNKVFLR DTTVVSPYTI LLFGGPINVQ HQTGTVTIDG WLEVTAPAQT AVLFKELRLT
1401: LHDILKELIR NPQASKVTDN EVLRSIIQLL LEEDKQRK
0101: LCLNLRGNEL PLKFSSGTSQ SNEGSVGIIS TARQDWVPSA DSSVAEVKEE KIPTVSVVPK GRSDSEFLRT VERAQADWIR QYMEQQEEDE AESWESGFSD
0201: DGSLEQVPRK KRSVESIVQE FHTARLEAIH AKERGDKKGQ EQASRIIRKI KQEISSLGLP DDILESAHES ASDHAVLDRS SEKLDVDDVT SPNFRTSDIH
0301: EHEIGMDEVS VNNSSNEFIE NNPSSVPLGD KAASGGEPED VELGDFLFEE DSSADVLATV LELQKKEKMR ELCSQKNLEK LEGIWKKGDP QKIPKAFLHQ
0401: LCQRSGWEAP KYAKIPGKGN LTSYSVSIMR KASGRGKSRK AGGLVTMELP SQDHASSTAE DAQNRVAAYA LHRLFPDLPV HMPITEPYAS LILQWEEGDS
0501: VKDIVDDQVE RRAYFVDSLL DASGSETITL SDVSNNASKE KFLHPHTTED KTVPVDYTAK NPLKEAESLS LKKEQEGRKK LKKYQEMLKS RAALPIADLK
0601: GEILHSLEEN DVLVICGETG CGKTTQVPQF ILDDMIESGR GGHCNIICTQ PRRIAATSVA ERVADERCES SPGSSESLVG YQVRLDSARN ERTKLLFCTT
0701: GILLRMFSGN KSLAGVSHII VDEVHERSLL GDFLLIVLKS LIQMQSALGT AKLKVILMSA TVDSHLFSHY FGNCPVITAQ GRTHPVSTYF LEDIYESINY
0801: RLASDSPASL SYGTSTREKN APIGNHRGKK NLVLSAWGDE SLLSEEYINP YYDSSNYQNY SGQTQKNLRK LNEDIIDYDL LEDLVCYIDE TYPDGAILVF
0901: LPGVAEINTL FDRLSVSFQF SGQSSEWILP LHSSVASEDQ KKVFMRPPEN IRKVIIATNI AETSITIDDV VYVVDCGKHK ENRYNPKKKL SSMVEDWISQ
1001: ANARQCRGRA GRVKPGICFC LYTSYRYEKL MRPYQIPEML RMPLVELCLQ IKLLSLGSIK LFLSMALEPP KDEAIMSAIS LLYEVGAVEG NEELTPLGYH
1101: LARLPVDVLV GKMLLYGGVF GCLSPILSIS AFLSYKSPFV YPKDERQNVE RAKLALLSDK LGCETDSDSG NWQSDHLLMM VAYKKWEKIL REKGVKAAKQ
1201: FCSSYFLSSS VMYMIRDMRV QFGTLLADIG LINLPKKSEV DWKKKEKLGS WLSDISQPFN INSNHSSVLK AILCAGLYPN VSAREEGIAT TALGNLKQSA
1301: NNSAKSNPAW YDGKREVHIH PSSINSDLKA FQYPFLVFLE KVETNKVFLR DTTVVSPYTI LLFGGPINVQ HQTGTVTIDG WLEVTAPAQT AVLFKELRLT
1401: LHDILKELIR NPQASKVTDN EVLRSIIQLL LEEDKQRK
0001: MAPKKKPQKQ SNKAASSSSS SKSNYQKPSS GPKLQISAEN EDRLRRLLLN SGRSGPSIPA PISNSLSKAQ KTKKLNNVYE KLSCEGFVDD QIELALSSLR
0101: DGATFEAALD WLCLNLPSHE LPVKFSTGAS RFPSTGGSVG VISTSRDDWN DSTDSSVRVE EEEPAVFVRV KGKQDEEDTL SSDKSSQADW IRQYMMRQEE
0201: EELECWEDEV DGIDPRNKVS GPRPFDVIAK EYYSARSDAI KAKEKRDKRG QEQAGLAIRK LKQEISDLGL SEAMLESEFQ REHAFESATE QESTCPISDN
0301: LHESVDADDV SVQMLDNLTL NTNPAESYES EEIQTKALPS SSSGQDFVAS DEDSEDVELG DTFFEEIPPS EISPHELLEL QKEEKMRELR SEKNLGKLDG
0401: IWKKGEAQKI PKAFLHQLCQ RSGWEAPKFN KETGEGRNFS YTVSILRKAS GRGKNRQAGG LVTLQLPPKD ENFESIEDAQ NKVAAFALHK LFSDLPVHFA
0501: ITEPYASLVL IWKQEELLCT TIQSTEEDRR ANFVDKLLEE DSFSLTTSSS SFENSLPLVD SYVKDKDDLG VVKSNNRAKR DSYIEAECLS LQRKQENKKR
0601: TQKYKDMLKT RTALPISEVK NGILQHLKEK DVLVVCGETG SGKTTQVPQF ILDDMIDSGH GGYCNIICTQ PRRIAAISVA QRVADERCES SPGLDDSLVG
0701: YQVRLESARS DKTRLLFCTT GILLRKLAGD RTLNDVTHII VDEVHERSLL GDFLLIILKS LIEKQSCDNT SRKLKVILMS ATVDADLFSR YFGHCPVITA
0801: QGRTHPVTTH FLEEIYESIN YLLAPDSPAA LRSDTSIKDK LGSVNDRRGK KNLVLAGWGD DYLLSEDCLN PFYVSSNYNS YSDQTQQNLK RLNEDRIDYE
0901: LLEELICHID DTCEEGAILI FLPGVAEIYM LLDMLAASYR FRGPAADWLL PLHSSIASSE QRKVFLRPPK GLRKVIAATN IAETSITIDD VVYVIDSGKH
1001: KENRYNPQKK LSSMVEDWIS QANARQRTGR AGRVKPGICF SLYTRYRFEK LMRPYQVPEM LRMPLVELCL QIKLLGLGHI KPFLSRALEP PSEGAMTSAI
1101: SLLHEVGAVE GDEELTPLGH HLAKLPVDVL IGKMLLYGGI FGCLSPILSI AAFLSYKSPF IYPKDEKQNV DRVKLALLSD NGVSSSDLNN NDRQSDHLLM
1201: MVAYDKWVKI LQERGMKAAQ RFCESKFLSS SVMRMIRDMR VQFGTLLADI GLINLPKTGE FSGRKKENLD VWFSDPTQPF NMYSQQPEVV KAILCAGLYP
1301: NIAANDKGIT ETTFNSLTKQ GNQTKSYSAW YDGRREVHIH PSSINSNFKA FQNPFLVFLE KVETNKVYLR DTTIVSPFSI LLFGGSINVH HQSGSVTIDG
1401: WLKVAAPAQT AVLFKELRLT LHSILKDLIR KPEKSGIVHN EVVKSMVHLL IEEGKPQHK
0101: DGATFEAALD WLCLNLPSHE LPVKFSTGAS RFPSTGGSVG VISTSRDDWN DSTDSSVRVE EEEPAVFVRV KGKQDEEDTL SSDKSSQADW IRQYMMRQEE
0201: EELECWEDEV DGIDPRNKVS GPRPFDVIAK EYYSARSDAI KAKEKRDKRG QEQAGLAIRK LKQEISDLGL SEAMLESEFQ REHAFESATE QESTCPISDN
0301: LHESVDADDV SVQMLDNLTL NTNPAESYES EEIQTKALPS SSSGQDFVAS DEDSEDVELG DTFFEEIPPS EISPHELLEL QKEEKMRELR SEKNLGKLDG
0401: IWKKGEAQKI PKAFLHQLCQ RSGWEAPKFN KETGEGRNFS YTVSILRKAS GRGKNRQAGG LVTLQLPPKD ENFESIEDAQ NKVAAFALHK LFSDLPVHFA
0501: ITEPYASLVL IWKQEELLCT TIQSTEEDRR ANFVDKLLEE DSFSLTTSSS SFENSLPLVD SYVKDKDDLG VVKSNNRAKR DSYIEAECLS LQRKQENKKR
0601: TQKYKDMLKT RTALPISEVK NGILQHLKEK DVLVVCGETG SGKTTQVPQF ILDDMIDSGH GGYCNIICTQ PRRIAAISVA QRVADERCES SPGLDDSLVG
0701: YQVRLESARS DKTRLLFCTT GILLRKLAGD RTLNDVTHII VDEVHERSLL GDFLLIILKS LIEKQSCDNT SRKLKVILMS ATVDADLFSR YFGHCPVITA
0801: QGRTHPVTTH FLEEIYESIN YLLAPDSPAA LRSDTSIKDK LGSVNDRRGK KNLVLAGWGD DYLLSEDCLN PFYVSSNYNS YSDQTQQNLK RLNEDRIDYE
0901: LLEELICHID DTCEEGAILI FLPGVAEIYM LLDMLAASYR FRGPAADWLL PLHSSIASSE QRKVFLRPPK GLRKVIAATN IAETSITIDD VVYVIDSGKH
1001: KENRYNPQKK LSSMVEDWIS QANARQRTGR AGRVKPGICF SLYTRYRFEK LMRPYQVPEM LRMPLVELCL QIKLLGLGHI KPFLSRALEP PSEGAMTSAI
1101: SLLHEVGAVE GDEELTPLGH HLAKLPVDVL IGKMLLYGGI FGCLSPILSI AAFLSYKSPF IYPKDEKQNV DRVKLALLSD NGVSSSDLNN NDRQSDHLLM
1201: MVAYDKWVKI LQERGMKAAQ RFCESKFLSS SVMRMIRDMR VQFGTLLADI GLINLPKTGE FSGRKKENLD VWFSDPTQPF NMYSQQPEVV KAILCAGLYP
1301: NIAANDKGIT ETTFNSLTKQ GNQTKSYSAW YDGRREVHIH PSSINSNFKA FQNPFLVFLE KVETNKVYLR DTTIVSPFSI LLFGGSINVH HQSGSVTIDG
1401: WLKVAAPAQT AVLFKELRLT LHSILKDLIR KPEKSGIVHN EVVKSMVHLL IEEGKPQHK
Arabidopsis Description
DExH-box ATP-dependent RNA helicase DExH7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4I9Q5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.