Factsheet for Solyc03g118920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g03030.t01	Wine grape	nucleus	67.61	76.82
Os01t0118100-01	Rice	cytosol, mitochondrion, nucleus	49.88	73.23
KRH60477	Soybean	plastid	67.44	68.64
KRH41772	Soybean	plastid	67.19	68.56
Bra018747.1-P	Field mustard	plastid	66.78	67.97
CDY40601	Canola	nucleus, plastid	66.78	67.91
CDX93688	Canola	plastid	66.69	67.88
AT1G48650.2	Thale cress	nucleus, plastid	67.44	67.16
Solyc04g007510.2.1	Tomato	plastid	61.7	64.21
TraesCS3A01G021300.1	Wheat	extracellular	66.28	63.99
HORVU3Hr1G002800.8	Barley	mitochondrion	66.19	63.75
TraesCS3B01G024900.1	Wheat	mitochondrion	66.11	63.67
GSMUA_Achr3P20920_001	Banana	mitochondrion, nucleus	65.86	63.23
KXG32067	Sorghum	mitochondrion	65.2	63.09
TraesCS3D01G025600.1	Wheat	mitochondrion, nucleus, plastid	65.11	62.96
Solyc01g006710.2.1	Tomato	mitochondrion	58.87	60.74
Zm00001d040082_P003	Maize	plastid	63.11	53.87
Solyc01g006970.2.1	Tomato	nucleus	37.89	44.13
Solyc01g079250.2.1	Tomato	nucleus	19.23	31.95
Solyc05g015040.2.1	Tomato	nucleus	17.82	30.57
Solyc09g008120.2.1	Tomato	nucleus	17.49	29.54
Solyc09g097820.2.1	Tomato	nucleus	16.82	29.15
Solyc12g089010.1.1	Tomato	nucleus	18.65	27.65
Solyc07g044930.2.1	Tomato	nucleus	27.39	27.44
Solyc03g115390.2.1	Tomato	nucleus	19.82	26.18
Solyc12g017700.1.1	Tomato	nucleus	18.98	25.73
Solyc01g103690.2.1	Tomato	nucleus	30.47	25.45
Solyc01g110990.2.1	Tomato	nucleus	21.23	22.95
Solyc07g039550.2.1	Tomato	nucleus	21.65	21.85
Solyc10g076910.1.1	Tomato	nucleus	21.32	19.92
Solyc01g095710.2.1	Tomato	nucleus	19.23	17.23
Solyc11g010310.1.1	Tomato	nucleus	20.15	14.19
Solyc04g014210.2.1	Tomato	nucleus	19.98	13.87

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014720	UniProt:K4BM41	InterPro:P-loop_NTPase	PFAM:PF00035	PFAM:PF00270	PFAM:PF00271
PFAM:PF04408	PFAM:PF07717	PFscan:PS50137	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934
PANTHER:PTHR18934:SF192	SMART:SM00358	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540
SUPFAM:SSF54768	EnsemblPlantsGene:Solyc03g118920.2	EnsemblPlants:Solyc03g118920.2.1	UniParc:UPI00027661B0	InterPro:dsRBD_dom	SEG:seg

Description

No Description!

Coordinates

chr3:+:67686581..67696612

Molecular Weight (calculated)

135222.0 Da

IEP (calculated)

8.883

GRAVY (calculated)

-0.402

Length

1201 amino acids

Sequence
(BLAST)

0001: MPYTNLIQNC LKVRLKANQF LSTMSTSLQF CPNRFHFETN PLLYRSSQSV IPQKRCLHGS VGFFCSAKGS SSSSSSVVLR RKRHGSSSSS SYPSPYFYQQ
0101: NLGYGRFAYD ECESESESDR ETQSSKQLGE STLHNIEEWR WKLSMLMRKK DDQEVVSTDK KDRRDFEHIS AMATRMGLHC RQYEKTIVCS KVPLPNYRPD
0201: LDVKRPQREV VLHYGLQSRV GDLLEAHLSK KSVNKGNLTH NAFLRGSNDN SSPNDKELHE NEKPFARNVV AERILRRRSL EMRSKQEDWQ GSPEGQKMLE
0301: LRRNLPAYKE REALLRAISE NQVVVVSGET GCGKTTQLPQ YILEAEIEAA RGATCNIICT QPRRISAMSV AERVAAERGE NLGESVGYKV RLEGMRGRDT
0401: RLLFCTTGIL LRRLLVDRKL EGVTHVIVDE IHERGMNEDF LLIVLKDLLP RRPELKLILM SATLNAELFS SYYGGAPMIH IPGFTYPVRS HFLENILEMT
0501: RYRLTPYNQI DNYGQDKMWK MQKQTIRKRK TQIASAVEES LESADFGQYN PLTRDSLSCW NPDSIGFNLI EHVLCHICRN ERPGAVLVFM TGWDDINTVK
0601: DQLQAHPLLG DPSRVLLLAC HGSMASAEQK LIFDKPEDGI RKIVLATNMA ETSITINDVV FVVDCGKAKE TSYDAINNTP CLLPSWISKA SARQRKGRAG
0701: RVQPGECYHL YPRCVYEAFA DYQLPELLRT PLQSLCLQIK SLQLGSISDF LSKAIQSPEP LSVQNAIEYL KTIGALDEDE NLTVLGHNLS MLPVEPKLGK
0801: MIILGVVFNC LDPVLTVVAG LSARDPFLMP FDKKDLAESA KAQFSARDFS DHLALVRAYD GWKDAERQQS GYDYCWRNFL SAQTLKAMDS LRKQFLYLLK
0901: DIGLVDSIQS CNAWSNNEHL VRAIVCGGLF PGICSVVNKE KSISLKTMED GGVLLYSNSV NAQEPQIPYP WLVFNEKVKV NAVFLRDSTA VSDSVVLLFG
1001: GSISGKALDG HLMMLGGYLE FFMNPSLANT YISLKRELNE LVHKKLSDRN FDVGSHGELL EAVKLLVSED QCEGKFVYGR KPSPKKSAKE LQKNVISKKG
1101: SGGENPKSHL QTLLARAGHQ SPSYKITQLK NNKFRATVIF NGLNFSGQPS SSKKDAEKDA AAEALQWFTG ETQSSSKAVE HMSALLKKSK SKNQLHSTKW
1201: R

Best Arabidopsis Sequence Match ( AT1G48650.1 )
(BLAST)

0001: MQLYSAIFRG HIRPNAVVGA ASMFIQHNSI QLHRSPKLLL RPSSVVRSLH CRRSGGLVTH SQRSRVLCVK AARGDASSST LGIEWRAANL PYFQRQNSGY
0101: GRIAYNDYES SDESDRDVGS SQSQQMAGST LDNIDQWRFK LTMLLRNKED QEVVSRERKD RRDFDHISAL ATRMGLHSRQ YSKIVVISKA PLPNYRPDLD
0201: DKRPQREVVL PFGLQSEVDA HLHSFLDQKK TLIPEMPRQN SSESLANGYG NYETPETVMQ NSLARERILR PRSLQLKSKQ QQWVDSPEGQ KMVGFRKTLP
0301: AYKEKDALLK AIAANQVVVV SGETGCGKTT QLPQYILESE IEAARGATCS IICTQPRRIS AISVSERVAA ERGEQIGESV GYKVRLEGMR GRDTRLLFCT
0401: TGVLLRRLLV DRSLKGVTHV VVDEIHERGM NEDFLLIVLK DLLPRRPDLK LILMSATLNA ELFSSYFGGA PAMHIPGFTY PVRAHFLEDY LETSGYRLTT
0501: YNQIDDYGEE KTWKMQKQAQ FKKRKSLISS AVEDALEAAD FKGYNFRTRD SLSCWSPDSI GFNLIENVLC HIVKGERPGA VLVFMTGWDD INSLKNQLEA
0601: HSLLGDPNKV LLLACHGSMA SSEQRLIFDR PPEGIRKIVL ATNMAETSIT INDVVYVIDC GKAKETSYDA LNNTPCLLPS WISKAAARQR RGRAGRVMPG
0701: ECYHLYPRCV YEAFADYQQP ELLRTPLQSL CLQIKSLGLG SISEFLSRAL QPPEALSVQN AVEYLKIIGA LDDDENLTPL GKNLSMLPVE PKLGKMLILG
0801: AIFNCLDPVM TVVAGLSVRD PFLMPFDKKD LAETARSKFS GRDYSDHLTL VRAYNGWKDA ERTHSGYDYC WKNFLSSQTL KAMDSMRKQF FNLLKEASLI
0901: DNIEGCSKLS HDEHLVRAII CAGMFPGVCS VVNKEKSITL KTMEDGQVLL YSSSVNGNVP MIPFPWLVFN DKVKVNSVFL RDSTAVSDSV LLLFGDKISS
1001: GGFDGHLKML GGYLEFFMKP TLAYTYLSLK RELDELIQNK LVNPKLDIQL YDKLMTAIRL LVSEDQCEGR FVYGRKALSP TPAKKLKDVG AQLQNSGGEN
1101: NKNQLQTLLA RAGHGSPVYK TRQLKNNQFR SMVTFNGLDF MGKPCGSKKN AEKDAAHEAL LWLQGESKSS LNDLNHMSML LKKNKSKNHA KASTKWG

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4HYJ6]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.