Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400041805 | Potato | nucleus | 90.5 | 95.13 |
| Solyc04g014210.2.1 | Tomato | nucleus | 70.09 | 69.08 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 42.82 | 59.25 |
| KRG97543 | Soybean | nucleus, plastid | 56.95 | 56.16 |
| KRH31333 | Soybean | nucleus, plastid | 56.25 | 55.24 |
| VIT_07s0191g00210.t01 | Wine grape | nucleus | 54.25 | 53.25 |
| OQU90279 | Sorghum | nucleus | 46.33 | 52.08 |
| Os07t0621500-01 | Rice | cytosol, nucleus | 39.3 | 52.06 |
| TraesCS5B01G080500.1 | Wheat | nucleus | 40.18 | 51.78 |
| CDX78376 | Canola | plastid | 52.9 | 51.34 |
| Bra006057.1-P | Field mustard | plastid | 52.79 | 51.28 |
| CDX81170 | Canola | plastid | 52.67 | 50.94 |
| AT5G10370.1 | Thale cress | nucleus | 52.73 | 50.65 |
| AT4G01020.1 | Thale cress | nucleus | 52.84 | 50.42 |
| CDX69841 | Canola | plastid | 51.32 | 49.52 |
| Bra009038.1-P | Field mustard | plastid | 51.26 | 49.46 |
| CDX96996 | Canola | nucleus | 51.14 | 49.29 |
| TraesCS2D01G171200.2 | Wheat | nucleus | 49.62 | 48.45 |
| TraesCS2B01G190100.1 | Wheat | nucleus | 49.21 | 48.39 |
| TraesCS5D01G087800.2 | Wheat | nucleus | 47.39 | 48.24 |
| Zm00001d022176_P002 | Maize | nucleus | 49.38 | 48.06 |
| TraesCS5A01G074100.1 | Wheat | nucleus | 47.33 | 48.04 |
| TraesCS3D01G112900.1 | Wheat | nucleus | 36.95 | 47.12 |
| TraesCS3B01G129700.1 | Wheat | nucleus | 44.75 | 46.92 |
| HORVU5Hr1G019730.1 | Barley | nucleus, plastid | 46.92 | 46.84 |
| TraesCS3A01G111000.1 | Wheat | nucleus | 48.15 | 46.81 |
| TraesCS2A01G164100.1 | Wheat | nucleus | 49.27 | 46.38 |
| HORVU2Hr1G030040.17 | Barley | nucleus | 48.86 | 45.64 |
| Solyc09g097820.2.1 | Tomato | nucleus | 13.55 | 33.33 |
| Solyc09g008120.2.1 | Tomato | nucleus | 12.9 | 30.94 |
| Solyc01g079250.2.1 | Tomato | nucleus | 13.02 | 30.71 |
| Solyc05g015040.2.1 | Tomato | nucleus | 12.32 | 30.0 |
| Solyc12g089010.1.1 | Tomato | nucleus | 13.02 | 27.41 |
| Solyc03g115390.2.1 | Tomato | nucleus | 14.37 | 26.95 |
| Solyc12g017700.1.1 | Tomato | nucleus | 13.31 | 25.62 |
| Solyc01g110990.2.1 | Tomato | nucleus | 14.9 | 22.86 |
| Solyc07g039550.2.1 | Tomato | nucleus | 14.84 | 21.26 |
| Solyc01g006970.2.1 | Tomato | nucleus | 12.73 | 21.05 |
| Solyc04g007510.2.1 | Tomato | plastid | 14.13 | 20.88 |
| Solyc01g006710.2.1 | Tomato | mitochondrion | 14.25 | 20.88 |
| Solyc03g118920.2.1 | Tomato | mitochondrion, nucleus | 14.19 | 20.15 |
| Solyc10g076910.1.1 | Tomato | nucleus | 14.6 | 19.38 |
| Solyc01g095710.2.1 | Tomato | nucleus | 13.37 | 17.0 |
| Solyc07g044930.2.1 | Tomato | nucleus | 11.85 | 16.85 |
| Solyc01g103690.2.1 | Tomato | nucleus | 13.55 | 16.06 |
Protein Annotations
| Gene3D:1.10.10.2130 | Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.3 | Gene3D:3.30.1370.10 | Gene3D:3.30.40.10 | Gene3D:3.40.50.300 |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0046872 |
| InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IBR_dom | InterPro:IPR001650 | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:IPR013087 | InterPro:IPR014001 | InterPro:IPR036612 | UniProt:K4D5J2 | InterPro:KH_dom |
| InterPro:KH_dom_type_1_sf | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF01485 | PFAM:PF04408 |
| ScanProsite:PS00028 | ScanProsite:PS00518 | ScanProsite:PS00690 | PFscan:PS50089 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR18934 | PANTHER:PTHR18934:SF81 | SMART:SM00322 | SMART:SM00487 | SMART:SM00490 | SMART:SM00647 |
| SMART:SM00847 | SUPFAM:SSF52540 | SUPFAM:SSF54791 | SUPFAM:SSF57850 | EnsemblPlantsGene:Solyc11g010310.1 | EnsemblPlants:Solyc11g010310.1.1 |
| UniParc:UPI00027694ED | InterPro:Znf_C2H2_type | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg |
Description
No Description!
Coordinates
chr11:+:3393422..3400263
Molecular Weight (calculated)
192005.0 Da
IEP (calculated)
7.231
GRAVY (calculated)
-0.174
Length
1705 amino acids
Sequence
(BLAST)
(BLAST)
0001: MQKRGSYPVF QSGHGFHRNS PEFSKRRIPN FTIQLRATPV NWKLNWQHLN SLITKLPFTP ENPSVVDSSY IVGTLSYVEW CQTLEVMVKL WELRLSGEHC
0101: FNPILKAKVE LPSDKEELNE RIEGVFLEKL NRLINGVLVQ KWQKKLGFVI DEIGKISLLL KKPNRIGVYQ ELCKKKKGIE GERDLILSRI DEYKNGIKCI
0201: IDNLEDSKNY EDVKVFDFGE GIDWNRIHFI MMRECRRLDD GLPIYGFRQQ ILQQILSHQV TVLVGETGSG KSTQLVQFLA DSGIAGDGSI VCTQPRKLAA
0301: NSLASRVREE SQGCYDDCSI SCNPPHSSDQ QLDSKVIFMT DHCLLQHYMG DKNLSNISCI IVDEAHERSL NTDLLLALIK KLLHQRFDLR LIIMSATVDA
0401: NQLAGYFFGC GTFHVAGRTF PVDIKYVPCE DNAHYAVGAI ASYVHDVIKM VTEIDRTEGV GAILAFLTSQ SEVEWACEQF KAPLAIALPL HGKLSYDDQN
0501: RVFLSYPGKR KVIFTTNLAE TSLTIPGVKY VVDSGMVKES RFEPGSGMNV LRICSVSQSS ANQRAGRAGR TEPGKCFRLY SQSDFEDMPR HQEPEIRKVH
0601: LGVAVLRILA LGIKNVQDFD FIDAPSPKAI EMATRNLVQL GAVTQRDDAS YELTEGGLKL VKLGIEPRLG KMILSCFDQR LGKEGVVLAA VMANSSSIFC
0701: RVGSEGDKLK SDCHKVQFCH PSGDLFTLLS VYREWEIVPR EKKNSWCWDN SINAKSMRRC HETVLEMEAC LQNDLNMILA SYWCWHPQVH NKCDEVLQSI
0801: ILSSLAENVA VYSGYDQLGY EVALTGKCVQ LHPSCSLLNF GQRPRWVVFG DVLASANEYL VCVTAFEFSS LVSLTPAPLF DFLKMDARKL EKKVLTGFGV
0901: LLLKRFCGKF NSSINNLVSR IRTSCKDERI GIQVNVDENE VLLYASSRDM ECVTLQVNDA LEYESKLLRN ECLEKCLFNG GSASVALFGA GAVIKHLELE
1001: KRCLTVDIFP SNGNAIDDKE LLMCLERATS GNICMVHKYY NMGQDKVENK WGTVKFLTPD AAEQATSLNK VEFNGGFLKM VPSRSINCSD QKMFRSVLKA
1101: KVSWPRRYSK GVGFLRCDPM DVPLILDDLS DLMIGGNVIR CEASDKNPNN IVIARLDKDM AETEILEVLR ATTNRRVLDF FLVRGDSVED PPIATCEEAL
1201: RKEISPFMPK KVPFVNSVRV QVFQPKLTEY FAKATITFDG SLHLEAAKAL EQIDGMVLPG CLPWQKIRCE RLFHSSVSCP AAVYHVIRNQ LDFLLASLRQ
1301: RKVGKCELQR NDNGSYTVRI SATATKVVAD LRRPLEQLMK GKIVDHVDIT PKVVRLLFSR EGNNIMRTIQ RETGTYIYFD KHSLLVSIFG SLDNVDRARQ
1401: RFIDSLLALH ENKQLEVHLR GGHLPHDLMK RVVQTFGPDL SALKEKVPGA EFSLNTKRHC IYMNGTKDMK QNVEDIISEI AQRSFPTQTT GDDADCPVCL
1501: CGLEDPYKLE ACCHLFCRTC LLEQCESAIK SREGFPICCL HQGCAEPILL ADLKSLLSIE KLEELFRASL GAFVAANGST YRFCPSPDCP SVYRIADPDM
1601: VGAPFACGAC YVETCTSCHM EYHPYLSCEM YQKVKNDPDC SLEEWSKGKE NVKKCPVCRC TIEKVDGCNH IECKCGNHVC WVCLRFFDTS DNCYDHLRSV
1701: HRSIT
0101: FNPILKAKVE LPSDKEELNE RIEGVFLEKL NRLINGVLVQ KWQKKLGFVI DEIGKISLLL KKPNRIGVYQ ELCKKKKGIE GERDLILSRI DEYKNGIKCI
0201: IDNLEDSKNY EDVKVFDFGE GIDWNRIHFI MMRECRRLDD GLPIYGFRQQ ILQQILSHQV TVLVGETGSG KSTQLVQFLA DSGIAGDGSI VCTQPRKLAA
0301: NSLASRVREE SQGCYDDCSI SCNPPHSSDQ QLDSKVIFMT DHCLLQHYMG DKNLSNISCI IVDEAHERSL NTDLLLALIK KLLHQRFDLR LIIMSATVDA
0401: NQLAGYFFGC GTFHVAGRTF PVDIKYVPCE DNAHYAVGAI ASYVHDVIKM VTEIDRTEGV GAILAFLTSQ SEVEWACEQF KAPLAIALPL HGKLSYDDQN
0501: RVFLSYPGKR KVIFTTNLAE TSLTIPGVKY VVDSGMVKES RFEPGSGMNV LRICSVSQSS ANQRAGRAGR TEPGKCFRLY SQSDFEDMPR HQEPEIRKVH
0601: LGVAVLRILA LGIKNVQDFD FIDAPSPKAI EMATRNLVQL GAVTQRDDAS YELTEGGLKL VKLGIEPRLG KMILSCFDQR LGKEGVVLAA VMANSSSIFC
0701: RVGSEGDKLK SDCHKVQFCH PSGDLFTLLS VYREWEIVPR EKKNSWCWDN SINAKSMRRC HETVLEMEAC LQNDLNMILA SYWCWHPQVH NKCDEVLQSI
0801: ILSSLAENVA VYSGYDQLGY EVALTGKCVQ LHPSCSLLNF GQRPRWVVFG DVLASANEYL VCVTAFEFSS LVSLTPAPLF DFLKMDARKL EKKVLTGFGV
0901: LLLKRFCGKF NSSINNLVSR IRTSCKDERI GIQVNVDENE VLLYASSRDM ECVTLQVNDA LEYESKLLRN ECLEKCLFNG GSASVALFGA GAVIKHLELE
1001: KRCLTVDIFP SNGNAIDDKE LLMCLERATS GNICMVHKYY NMGQDKVENK WGTVKFLTPD AAEQATSLNK VEFNGGFLKM VPSRSINCSD QKMFRSVLKA
1101: KVSWPRRYSK GVGFLRCDPM DVPLILDDLS DLMIGGNVIR CEASDKNPNN IVIARLDKDM AETEILEVLR ATTNRRVLDF FLVRGDSVED PPIATCEEAL
1201: RKEISPFMPK KVPFVNSVRV QVFQPKLTEY FAKATITFDG SLHLEAAKAL EQIDGMVLPG CLPWQKIRCE RLFHSSVSCP AAVYHVIRNQ LDFLLASLRQ
1301: RKVGKCELQR NDNGSYTVRI SATATKVVAD LRRPLEQLMK GKIVDHVDIT PKVVRLLFSR EGNNIMRTIQ RETGTYIYFD KHSLLVSIFG SLDNVDRARQ
1401: RFIDSLLALH ENKQLEVHLR GGHLPHDLMK RVVQTFGPDL SALKEKVPGA EFSLNTKRHC IYMNGTKDMK QNVEDIISEI AQRSFPTQTT GDDADCPVCL
1501: CGLEDPYKLE ACCHLFCRTC LLEQCESAIK SREGFPICCL HQGCAEPILL ADLKSLLSIE KLEELFRASL GAFVAANGST YRFCPSPDCP SVYRIADPDM
1601: VGAPFACGAC YVETCTSCHM EYHPYLSCEM YQKVKNDPDC SLEEWSKGKE NVKKCPVCRC TIEKVDGCNH IECKCGNHVC WVCLRFFDTS DNCYDHLRSV
1701: HRSIT
0001: MRNSFPPSDG GRSTTDRRQQ SFPSSSTNRY NSRSAQSSPP LNHCTTWNQQ HSQYHNTNFP PNYRRDRAPS SGFSPPVTRA RPNFIVQLLH PAAANSDTKL
0101: SKKQEIESIA LLCEIPEESV HVPQFGCIAA SFSFRQWVDA RSAVVALWDY RLQGRHDFVP ELIPNVVVPS DMDELKDRLR DLFSSHVLSL MENGQGVKKV
0201: RMEIDDKSRQ VASFSSKRGL KFEVFEKKKA LEAERDLVVN RLDEFNNAMK SILRYLIGQD GYEFDVDDED DEDVAVFSLE GAYDWRRIHY LILRECRRLE
0301: DGLPIYAYRR QILKKIHCEQ IMVLIGETGS GKSTQLVQFL ADSGVAASES IVCTQPRKIA AMTLTDRVRE ESSGCYEENT VSCTPTFSST EEISSKVVYM
0401: TDNCLLQHYM KDRSLSGISC VIIDEAHERS LNTDLLLALL RKLLSRRIDL RLVIMSATAD ANQLSQYLFD CGILHVNGRN FPVEIVYSPS GTEENSVVGR
0501: IASYAGDVVK MAVEIHKTEK EGTILAFLTS QAEVEWACER FVAPSAIALP LHGKLSFEEQ FMVFQNYPGR RKVIFATNIA ETSLTIPGVK YVIDSGMVKE
0601: SKYEPRTGMS ILKVCQVSQS SARQRAGRAG RTEPGRCYRL YSKTDFDSMN LNQEPEIRRV HLGVALLRML ALGIDNIAAF EFVDAPVPEA IAMAIQNLVQ
0701: LGAVVEKNGV LELTQEGHCL VKLGLEPKLG KLILGCFRHR MGKEGIVLAA VMANASSIFC RVGNFDDKMK ADRLKVQFCN DNGDLFTLLS VYKEWASLPR
0801: DRRNKWCWEN SLNAKSMRRC EDTVKELEIC IERELTLVSP SYWVWNPNEG TKHDKYLKMV ILASLAENVA MYTGYDQLGY EVALTSQQVQ LHPSCSLLAF
0901: GQKPSWVVFG ELLSIVDQYL VCVTAFDFEA LYMLDPPPPF DASQMDERRL RVKKVVGCSS TVLKRFCGKS NRSLLSIVSR ARSLCSDERI GIQVDVDQNE
1001: IRLYASPLDM EKVSALVNDA LECEKKWMRN ECLEKYLFHG RGQIPIALFG SGAQIKHLEV DQRFLTVDVH YYGDDVVDDR ELLTFLEKKI DGCICSIYKF
1101: AANKQDCDEK EKWGRITFLT PESAMKATEI QKFDFKGSVL KVFPSLSTGG GIFKMPYFSS VTAKIRWPRK ESSGRGCLKC PSGDIHSILG DITSLEIGTN
1201: YVHIQRDQLS NDSILISGLG DLSEAEVLDV LEFRTQRRDL NFFIFRKKYS VQCPSPTACE EELHKRIFAR MSAKNPEPNC VQVQVFEPKE DNYFMRALIK
1301: FDGRLHLEAA KALQELNGEV LPGCLPWQKI KCEQLFQSSI ICSASIYNTV KRQLNVLLAR FERQKGGECC LEPTHNGAYR VKITAYATRP VAEMRRELEE
1401: LLRGKPINHP GFTPRVVQHL MSRDGINLMR KIQQETETYI LLDRHNLTVR ICGTSEKIAK AEQELVQSLM DYHESKQLEI HLRGPEIRPD LMKEVVKRFG
1501: PELQGIKEKV HGVDLKLNTR YHVIQVHGSK EMRQEVQKMV NELAREKSAL GEKPDEIELE CPICLSEVDD GYSLEGCSHL FCKACLLEQF EASMRNFDAF
1601: PILCSHIDCG APIVVADMRA LLSQEKLDEL ISASLSAFVT SSDGKLRFCS TPDCPSIYRV AGPQESGEPF ICGACHSETC TRCHLEYHPL ITCERYKKFK
1701: ENPDLSLKDW AKGKDVKECP ICKSTIEKTD GCNHLQCRCG KHICWTCLDV FTQAEPCYAH LRTIHGGIGL VELGVPEHPV AQPVHRL
0101: SKKQEIESIA LLCEIPEESV HVPQFGCIAA SFSFRQWVDA RSAVVALWDY RLQGRHDFVP ELIPNVVVPS DMDELKDRLR DLFSSHVLSL MENGQGVKKV
0201: RMEIDDKSRQ VASFSSKRGL KFEVFEKKKA LEAERDLVVN RLDEFNNAMK SILRYLIGQD GYEFDVDDED DEDVAVFSLE GAYDWRRIHY LILRECRRLE
0301: DGLPIYAYRR QILKKIHCEQ IMVLIGETGS GKSTQLVQFL ADSGVAASES IVCTQPRKIA AMTLTDRVRE ESSGCYEENT VSCTPTFSST EEISSKVVYM
0401: TDNCLLQHYM KDRSLSGISC VIIDEAHERS LNTDLLLALL RKLLSRRIDL RLVIMSATAD ANQLSQYLFD CGILHVNGRN FPVEIVYSPS GTEENSVVGR
0501: IASYAGDVVK MAVEIHKTEK EGTILAFLTS QAEVEWACER FVAPSAIALP LHGKLSFEEQ FMVFQNYPGR RKVIFATNIA ETSLTIPGVK YVIDSGMVKE
0601: SKYEPRTGMS ILKVCQVSQS SARQRAGRAG RTEPGRCYRL YSKTDFDSMN LNQEPEIRRV HLGVALLRML ALGIDNIAAF EFVDAPVPEA IAMAIQNLVQ
0701: LGAVVEKNGV LELTQEGHCL VKLGLEPKLG KLILGCFRHR MGKEGIVLAA VMANASSIFC RVGNFDDKMK ADRLKVQFCN DNGDLFTLLS VYKEWASLPR
0801: DRRNKWCWEN SLNAKSMRRC EDTVKELEIC IERELTLVSP SYWVWNPNEG TKHDKYLKMV ILASLAENVA MYTGYDQLGY EVALTSQQVQ LHPSCSLLAF
0901: GQKPSWVVFG ELLSIVDQYL VCVTAFDFEA LYMLDPPPPF DASQMDERRL RVKKVVGCSS TVLKRFCGKS NRSLLSIVSR ARSLCSDERI GIQVDVDQNE
1001: IRLYASPLDM EKVSALVNDA LECEKKWMRN ECLEKYLFHG RGQIPIALFG SGAQIKHLEV DQRFLTVDVH YYGDDVVDDR ELLTFLEKKI DGCICSIYKF
1101: AANKQDCDEK EKWGRITFLT PESAMKATEI QKFDFKGSVL KVFPSLSTGG GIFKMPYFSS VTAKIRWPRK ESSGRGCLKC PSGDIHSILG DITSLEIGTN
1201: YVHIQRDQLS NDSILISGLG DLSEAEVLDV LEFRTQRRDL NFFIFRKKYS VQCPSPTACE EELHKRIFAR MSAKNPEPNC VQVQVFEPKE DNYFMRALIK
1301: FDGRLHLEAA KALQELNGEV LPGCLPWQKI KCEQLFQSSI ICSASIYNTV KRQLNVLLAR FERQKGGECC LEPTHNGAYR VKITAYATRP VAEMRRELEE
1401: LLRGKPINHP GFTPRVVQHL MSRDGINLMR KIQQETETYI LLDRHNLTVR ICGTSEKIAK AEQELVQSLM DYHESKQLEI HLRGPEIRPD LMKEVVKRFG
1501: PELQGIKEKV HGVDLKLNTR YHVIQVHGSK EMRQEVQKMV NELAREKSAL GEKPDEIELE CPICLSEVDD GYSLEGCSHL FCKACLLEQF EASMRNFDAF
1601: PILCSHIDCG APIVVADMRA LLSQEKLDEL ISASLSAFVT SSDGKLRFCS TPDCPSIYRV AGPQESGEPF ICGACHSETC TRCHLEYHPL ITCERYKKFK
1701: ENPDLSLKDW AKGKDVKECP ICKSTIEKTD GCNHLQCRCG KHICWTCLDV FTQAEPCYAH LRTIHGGIGL VELGVPEHPV AQPVHRL
Arabidopsis Description
ATP-dependent RNA helicase DEAH11, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P0CE10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.