Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G087800.2 | Wheat | nucleus | 91.63 | 93.43 |
| TraesCS5B01G080500.1 | Wheat | nucleus | 72.19 | 93.2 |
| TraesCS5A01G074100.1 | Wheat | nucleus | 91.33 | 92.86 |
| HORVU2Hr1G030040.17 | Barley | nucleus | 81.85 | 76.6 |
| Os07t0621500-01 | Rice | cytosol, nucleus | 56.91 | 75.52 |
| OQU90279 | Sorghum | nucleus | 63.58 | 71.59 |
| Zm00001d022176_P002 | Maize | nucleus | 69.73 | 67.98 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 42.04 | 58.28 |
| PGSC0003DMT400041805 | Potato | nucleus | 46.19 | 48.64 |
| KRG97543 | Soybean | nucleus, plastid | 49.24 | 48.64 |
| KRH31333 | Soybean | nucleus, plastid | 48.83 | 48.04 |
| Solyc04g014210.2.1 | Tomato | nucleus | 47.66 | 47.05 |
| Solyc11g010310.1.1 | Tomato | nucleus | 46.84 | 46.92 |
| PGSC0003DMT400060759 | Potato | nucleus | 47.42 | 46.85 |
| CDX81170 | Canola | plastid | 45.14 | 43.73 |
| Bra006057.1-P | Field mustard | plastid | 44.91 | 43.7 |
| AT5G10370.1 | Thale cress | nucleus | 45.32 | 43.61 |
| CDX78376 | Canola | plastid | 44.85 | 43.6 |
| AT4G01020.1 | Thale cress | nucleus | 45.43 | 43.42 |
| CDX96996 | Canola | nucleus | 44.44 | 42.91 |
| VIT_07s0191g00210.t01 | Wine grape | nucleus | 43.5 | 42.77 |
| Bra009038.1-P | Field mustard | plastid | 44.2 | 42.73 |
| CDX69841 | Canola | plastid | 44.09 | 42.61 |
| HORVU4Hr1G052730.3 | Barley | cytosol | 12.76 | 30.24 |
| HORVU3Hr1G028550.17 | Barley | cytosol | 11.83 | 28.98 |
| HORVU7Hr1G032080.3 | Barley | plastid | 12.18 | 25.4 |
| HORVU1Hr1G039880.1 | Barley | nucleus | 12.65 | 22.86 |
| HORVU1Hr1G056400.1 | Barley | nucleus | 13.99 | 22.44 |
| HORVU1Hr1G056370.1 | Barley | nucleus | 13.93 | 22.39 |
| HORVU4Hr1G088270.17 | Barley | mitochondrion | 13.93 | 22.04 |
| HORVU5Hr1G094990.5 | Barley | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 14.75 | 21.91 |
| HORVU0Hr1G007860.1 | Barley | nucleus | 14.7 | 20.21 |
| HORVU2Hr1G047870.2 | Barley | nucleus | 14.46 | 19.56 |
| HORVU3Hr1G002800.8 | Barley | mitochondrion | 14.23 | 19.49 |
| HORVU0Hr1G039590.6 | Barley | nucleus | 12.76 | 16.94 |
| HORVU3Hr1G074660.7 | Barley | plastid | 12.3 | 16.48 |
Protein Annotations
| Gene3D:1.10.10.2130 | Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.3 | Gene3D:3.30.40.10 | Gene3D:3.40.50.300 | ncoils:Coil |
| InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | GO:GO:0046872 | EnsemblPlantsGene:HORVU5Hr1G019730 | EnsemblPlants:HORVU5Hr1G019730.1 |
| InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IBR_dom | InterPro:IPR001650 | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:IPR014001 | UniProt:M0XRH7 | InterPro:P-loop_NTPase | PFAM:PF00271 | PFAM:PF01485 |
| PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00518 | ScanProsite:PS00690 | PFscan:PS50089 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF81 | SMART:SM00487 | SMART:SM00490 | SMART:SM00647 |
| SMART:SM00847 | SUPFAM:SSF52540 | SUPFAM:SSF57850 | UniParc:UPI000295E624 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_RING_CS | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:87104058..87111820
Molecular Weight (calculated)
191175.0 Da
IEP (calculated)
7.557
GRAVY (calculated)
-0.201
Length
1708 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKSELPGEHS VRFQPPTKTF SNPSAAAMRR SPADRPFRPP DRGSLPPHRS QQQRQPQPQS AAILLLRAGP DFSSPAATEV DALVAGLRPD SLSVFSSGRH
0101: AARLIFRSLP AAAAAARDLW SLRLEGRHLL TPYTPDPVFA AKAFPLISSL FASHASRLLD SDLVSRLAAR SGQLAASVQS VKHRLRISRN SLRDFEQLSL
0201: QRKTLEADKD MLDAKIAEYK AAMMSIRRAM LSETDEEKEV DEEEEGVDLF GIVEGEDVDF ARVHTMMLRE CRRLNEGLPI YAYRRKILNH VFTNQVMILI
0301: GETGSGKSTQ LVQYLADSGL AAEGTIFCTQ PRKIAAITLA HRVDEESNGC YAHNFVSSCS TFPGSRGFSS KIIFGTDSYL LHHCMNDMGL DGVSYIIVDE
0401: AHERSLNTDL LLALIKKKLL DRVDLRLIIM SATADANRLA EYFYGCQTFH VKGRNFPVEI KYIPDVSVDA SFNTVPNSVN DACATASYVN DVVRVVGVIH
0501: KNEEEGAILA FLTSQLEVEW ACENFSDASA VVLPMHGKLS HVEQSRVFNS YPGKRKVIFC TNMAETSLTI KEVKYVVDPG LAKESRFVPS SGLNVLKVNW
0601: ISQSSANQRA GRAGRTGAGK CYRLYSESHF RMMEVHQEPE IRKVHLGTAV LRILALGVRD AQNFEFVDAP NPEAINMALK NLEQLGAIKC KCNLFELTDT
0701: GRYLVKLGIE PRLGKIMLDC FDSGLRKEGV ILAAVMANSS SIFCRVGTNE EKHKADLQKV RLCHQDGDLF TLLAVYKKWE DGHGNRNLWC WQNSINAKTM
0801: RRCQETISEL ENCLKHELNI IVPSYWCWNP EVPSMHDKLL KRIILSTLTG NLAMFLGHEK FGYQVISTDQ AVNLHPSCSL LNYGIKPEWV VFTEILSVPN
0901: QYLVCVTAVD CDELYAIHPM SFIQQLEKHK LQIKVISGLG RALLGRFCGK YGQNQQRIIS RLKEECRDDR ITVEINFENN EVVLFATKQD IEKVFCIVNG
1001: VLECEGKMLR NECLQKSLFP SRIGSSPLAL FGSGAEIKHL ELGKRYLTVE VLHQNACDIN DKELIFLVDS LISGVANFHK SSGNFRIASD ETKWGKFTFL
1101: KPEGAEEAVS KLNGMEFHGS SLKVVPVCSD NRGLPFPAVR GRLSWPCNPN RGRALGTHLL RLVVPSVSAC EEALVREISS FMPNKSFPGQ NFRVEVFPPE
1201: ENNSMMRATI TFDGSLHREA ARALDHLEGS FLPCCQPWQI IRCKHVFHST LSCPLRVYNV ISQEVASLLE SFRSQKGVSY NFEKTENGIF RLKLTANATK
1301: TIADLRRPLE ILMKGNTVNH PDLTLSAVQL LLSHDGVAHL KSIEQETGTY MLYDRQSLNI KVFGHQDQMA AAETKLVHAL TELLEKKPLE ISLRGHNLPP
1401: DLMKKTVENF GVDLEGFKKE MPAVNVELHK HRHLLKVWGS KEDKRRVEGM ISELITSVKQ NALVQLPPGS VGGSKDKQRV DDNELAQDAC PICLCETEDP
1501: FELESCGHMF CRACLVDQCE SATKSHDGFP VCCLKTGCKK PFLIVDLKHL VSNEKLEDLF RASLRAFVAS RAGTYRFCPT PDCQSIYQVA APDAETKPFV
1601: CGACYVEICT KCHLEYHPFM SCEAYKQYKE DPDATLLEWR RGKGNVKNCP SCGYTIEKSE GCNHVECRCG SHICWACLAN FRSSEECYGH LRMMMMFVCL
1701: YINLAVIA
0101: AARLIFRSLP AAAAAARDLW SLRLEGRHLL TPYTPDPVFA AKAFPLISSL FASHASRLLD SDLVSRLAAR SGQLAASVQS VKHRLRISRN SLRDFEQLSL
0201: QRKTLEADKD MLDAKIAEYK AAMMSIRRAM LSETDEEKEV DEEEEGVDLF GIVEGEDVDF ARVHTMMLRE CRRLNEGLPI YAYRRKILNH VFTNQVMILI
0301: GETGSGKSTQ LVQYLADSGL AAEGTIFCTQ PRKIAAITLA HRVDEESNGC YAHNFVSSCS TFPGSRGFSS KIIFGTDSYL LHHCMNDMGL DGVSYIIVDE
0401: AHERSLNTDL LLALIKKKLL DRVDLRLIIM SATADANRLA EYFYGCQTFH VKGRNFPVEI KYIPDVSVDA SFNTVPNSVN DACATASYVN DVVRVVGVIH
0501: KNEEEGAILA FLTSQLEVEW ACENFSDASA VVLPMHGKLS HVEQSRVFNS YPGKRKVIFC TNMAETSLTI KEVKYVVDPG LAKESRFVPS SGLNVLKVNW
0601: ISQSSANQRA GRAGRTGAGK CYRLYSESHF RMMEVHQEPE IRKVHLGTAV LRILALGVRD AQNFEFVDAP NPEAINMALK NLEQLGAIKC KCNLFELTDT
0701: GRYLVKLGIE PRLGKIMLDC FDSGLRKEGV ILAAVMANSS SIFCRVGTNE EKHKADLQKV RLCHQDGDLF TLLAVYKKWE DGHGNRNLWC WQNSINAKTM
0801: RRCQETISEL ENCLKHELNI IVPSYWCWNP EVPSMHDKLL KRIILSTLTG NLAMFLGHEK FGYQVISTDQ AVNLHPSCSL LNYGIKPEWV VFTEILSVPN
0901: QYLVCVTAVD CDELYAIHPM SFIQQLEKHK LQIKVISGLG RALLGRFCGK YGQNQQRIIS RLKEECRDDR ITVEINFENN EVVLFATKQD IEKVFCIVNG
1001: VLECEGKMLR NECLQKSLFP SRIGSSPLAL FGSGAEIKHL ELGKRYLTVE VLHQNACDIN DKELIFLVDS LISGVANFHK SSGNFRIASD ETKWGKFTFL
1101: KPEGAEEAVS KLNGMEFHGS SLKVVPVCSD NRGLPFPAVR GRLSWPCNPN RGRALGTHLL RLVVPSVSAC EEALVREISS FMPNKSFPGQ NFRVEVFPPE
1201: ENNSMMRATI TFDGSLHREA ARALDHLEGS FLPCCQPWQI IRCKHVFHST LSCPLRVYNV ISQEVASLLE SFRSQKGVSY NFEKTENGIF RLKLTANATK
1301: TIADLRRPLE ILMKGNTVNH PDLTLSAVQL LLSHDGVAHL KSIEQETGTY MLYDRQSLNI KVFGHQDQMA AAETKLVHAL TELLEKKPLE ISLRGHNLPP
1401: DLMKKTVENF GVDLEGFKKE MPAVNVELHK HRHLLKVWGS KEDKRRVEGM ISELITSVKQ NALVQLPPGS VGGSKDKQRV DDNELAQDAC PICLCETEDP
1501: FELESCGHMF CRACLVDQCE SATKSHDGFP VCCLKTGCKK PFLIVDLKHL VSNEKLEDLF RASLRAFVAS RAGTYRFCPT PDCQSIYQVA APDAETKPFV
1601: CGACYVEICT KCHLEYHPFM SCEAYKQYKE DPDATLLEWR RGKGNVKNCP SCGYTIEKSE GCNHVECRCG SHICWACLAN FRSSEECYGH LRMMMMFVCL
1701: YINLAVIA
001: MQVVIVREDK RNVRRKVSED EDDGTESEEE RLRDQREREE LEQHLRERDT ARTRKLTEPK MSKKEQEEFV RRDSAVDKGD IESLRKFSWQ EYMKKRKQKK
101: VLELKDDIED EPYLFGDEKL TEREIREFRY KREIYELIKK STQEEDNVGE YRMPDAYDQQ GSVDQEKRFA VSVQRYRDMG SAEKMNPFAE QEAWEDHQIE
201: NAALKFGAKN KEVSDNYEFV FEDQIDFIKA SVLAGDNYED EMHAKPSQDS AGKSAFHMLQ EDRKALPIYT YRDQLLNAVK DHQVLIIVGE TGSGKTTQIP
301: QYLHEAGYTK LGKVGCTQPR RVAAMSVAAR VAQEMGGKLG HEVGYSIRFE DCTSEKTILK YMTDGMLLRE LLGEPDLGSY SVIIVDEAHE RTLRTDILFG
401: LVKDIARARP DLKLLISSAT MDAEKFSDFF DQAPIFRFPG RRYPVDICFT TAPEADYMDA AITTVLTIHV KEPLGDVLVF LPGQEEIEAV EENLKHKIRG
501: LGTKIRELII CPIYANLPSE LQAKIFEPTP EGARKVVLAT NIAETSLTID GIKYVVDPGF SKMKSYNPRT GMESLLVTPI SKASATQRTG RAGRTSPGKC
601: YRLYTAFNYY NDLEDNTVPE IQRTNLASVV LSLKSLGIHN LLNFDFMDPP PSEALIKSLE LLFALGALNQ LGELTKAGRR MAEFPLDPML SKMIVVSDKY
701: KCSDEIISIA AMLSIGPSIF YRPKDKQVHA DNAMKNFHVG NVGDHIAFLK IYNSWKETNY STQWCYENYI QVRSMKRARD IRDQLEGLLE RVEIDVSSNA
801: NELDSIRKSI VAGFFPHTAK LQKNGSYRTV KHPQTVHIHP ASGLSQVLPR WVVYHQLVLT SKEYMRQVTE LKPEWLIEIA PHYYQLKDVE DATSKKMPKT
901: SGRAVV
101: VLELKDDIED EPYLFGDEKL TEREIREFRY KREIYELIKK STQEEDNVGE YRMPDAYDQQ GSVDQEKRFA VSVQRYRDMG SAEKMNPFAE QEAWEDHQIE
201: NAALKFGAKN KEVSDNYEFV FEDQIDFIKA SVLAGDNYED EMHAKPSQDS AGKSAFHMLQ EDRKALPIYT YRDQLLNAVK DHQVLIIVGE TGSGKTTQIP
301: QYLHEAGYTK LGKVGCTQPR RVAAMSVAAR VAQEMGGKLG HEVGYSIRFE DCTSEKTILK YMTDGMLLRE LLGEPDLGSY SVIIVDEAHE RTLRTDILFG
401: LVKDIARARP DLKLLISSAT MDAEKFSDFF DQAPIFRFPG RRYPVDICFT TAPEADYMDA AITTVLTIHV KEPLGDVLVF LPGQEEIEAV EENLKHKIRG
501: LGTKIRELII CPIYANLPSE LQAKIFEPTP EGARKVVLAT NIAETSLTID GIKYVVDPGF SKMKSYNPRT GMESLLVTPI SKASATQRTG RAGRTSPGKC
601: YRLYTAFNYY NDLEDNTVPE IQRTNLASVV LSLKSLGIHN LLNFDFMDPP PSEALIKSLE LLFALGALNQ LGELTKAGRR MAEFPLDPML SKMIVVSDKY
701: KCSDEIISIA AMLSIGPSIF YRPKDKQVHA DNAMKNFHVG NVGDHIAFLK IYNSWKETNY STQWCYENYI QVRSMKRARD IRDQLEGLLE RVEIDVSSNA
801: NELDSIRKSI VAGFFPHTAK LQKNGSYRTV KHPQTVHIHP ASGLSQVLPR WVVYHQLVLT SKEYMRQVTE LKPEWLIEIA PHYYQLKDVE DATSKKMPKT
901: SGRAVV
Arabidopsis Description
MEE29Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 [Source:UniProtKB/Swiss-Prot;Acc:F4IJV4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.