Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69841 | Canola | plastid | 98.98 | 98.98 |
| Bra006057.1-P | Field mustard | plastid | 81.49 | 82.05 |
| AT5G10370.1 | Thale cress | nucleus | 77.53 | 77.18 |
| AT4G01020.1 | Thale cress | nucleus | 76.85 | 75.99 |
| KRG97543 | Soybean | nucleus, plastid | 53.76 | 54.95 |
| KRH31333 | Soybean | nucleus, plastid | 52.8 | 53.74 |
| PGSC0003DMT400041805 | Potato | nucleus | 48.61 | 52.96 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 36.33 | 52.11 |
| Solyc11g010310.1.1 | Tomato | nucleus | 49.46 | 51.26 |
| PGSC0003DMT400060759 | Potato | nucleus | 50.14 | 51.24 |
| Solyc04g014210.2.1 | Tomato | nucleus | 50.08 | 51.16 |
| OQU90279 | Sorghum | nucleus | 41.54 | 48.38 |
| VIT_07s0191g00210.t01 | Wine grape | nucleus | 47.31 | 48.13 |
| TraesCS5B01G080500.1 | Wheat | nucleus | 35.65 | 47.62 |
| Os07t0621500-01 | Rice | cytosol, nucleus | 34.52 | 47.4 |
| TraesCS5A01G074100.1 | Wheat | nucleus | 43.46 | 45.71 |
| TraesCS2D01G171200.2 | Wheat | nucleus | 45.05 | 45.59 |
| TraesCS5D01G087800.2 | Wheat | nucleus | 43.18 | 45.55 |
| TraesCS2B01G190100.1 | Wheat | nucleus | 44.43 | 45.27 |
| Zm00001d022176_P002 | Maize | nucleus | 44.65 | 45.03 |
| HORVU5Hr1G019730.1 | Barley | nucleus, plastid | 42.73 | 44.2 |
| TraesCS3D01G112900.1 | Wheat | nucleus | 33.28 | 43.98 |
| TraesCS3A01G111000.1 | Wheat | nucleus | 43.63 | 43.96 |
| TraesCS3B01G129700.1 | Wheat | nucleus | 40.41 | 43.91 |
| TraesCS2A01G164100.1 | Wheat | nucleus | 44.88 | 43.79 |
| HORVU2Hr1G030040.17 | Barley | nucleus | 44.14 | 42.74 |
| Bra001238.1-P | Field mustard | cytosol, mitochondrion | 5.21 | 34.85 |
| Bra040328.1-P | Field mustard | cytosol, mitochondrion | 4.19 | 34.58 |
| Bra001237.1-P | Field mustard | cytosol | 8.21 | 33.56 |
| Bra011023.1-P | Field mustard | nucleus | 12.85 | 32.95 |
| Bra003744.1-P | Field mustard | nucleus | 12.34 | 32.54 |
| Bra007671.1-P | Field mustard | nucleus | 12.79 | 31.48 |
| Bra013313.1-P | Field mustard | nucleus | 12.39 | 31.42 |
| Bra010915.1-P | Field mustard | nucleus | 12.51 | 31.35 |
| Bra024720.1-P | Field mustard | nucleus | 12.79 | 30.71 |
| Bra000445.1-P | Field mustard | cytosol | 12.51 | 30.57 |
| Bra038498.1-P | Field mustard | nucleus | 13.41 | 26.3 |
| Bra010168.1-P | Field mustard | nucleus | 14.43 | 24.43 |
| Bra023043.1-P | Field mustard | nucleus | 12.85 | 22.81 |
| Bra025211.1-P | Field mustard | nucleus | 14.77 | 22.29 |
| Bra024903.1-P | Field mustard | nucleus | 14.26 | 22.2 |
| Bra009414.1-P | Field mustard | mitochondrion | 14.04 | 21.47 |
| Bra018747.1-P | Field mustard | plastid | 14.2 | 21.27 |
| Bra023387.1-P | Field mustard | nucleus | 13.7 | 19.39 |
| Bra040091.1-P | Field mustard | nucleus | 8.6 | 19.22 |
| Bra032998.1-P | Field mustard | nucleus | 12.22 | 17.46 |
| Bra021665.1-P | Field mustard | nucleus | 12.22 | 16.55 |
| Bra018293.1-P | Field mustard | plasma membrane, vacuole | 11.94 | 15.98 |
| Bra027890.1-P | Field mustard | nucleus | 11.04 | 14.66 |
Protein Annotations
| Gene3D:1.10.10.2130 | Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.3 | Gene3D:3.30.40.10 | Gene3D:3.40.50.300 | EnsemblPlantsGene:Bra009038 |
| EnsemblPlants:Bra009038.1 | EnsemblPlants:Bra009038.1-P | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | GO:GO:0046872 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IBR_dom | InterPro:IPR001650 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR013087 |
| InterPro:IPR014001 | UniProt:M4CXU1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF01485 |
| PFAM:PF04408 | PFAM:PF07717 | PFAM:PF13923 | ScanProsite:PS00028 | ScanProsite:PS00518 | ScanProsite:PS00690 |
| PFscan:PS50089 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF81 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00647 | SMART:SM00847 | SUPFAM:SSF52540 | SUPFAM:SSF57850 | UniParc:UPI00025446CD |
| InterPro:Znf_C2H2_type | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : |
Description
AT5G10370 (E=0.0) | helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related
Coordinates
chrA10:-:14982143..14987726
Molecular Weight (calculated)
199466.0 Da
IEP (calculated)
7.176
GRAVY (calculated)
-0.273
Length
1767 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRSSLPPPNS GRSTTTNRQL SLPSASTNRS NSRSSHSSPP LTHRPTQNHP HRNHHYPNSN FPPNHRPDRG PTTRSRPNFI VQLVHPRTTT AANTDANPSF
0101: SVRKQAIITL ASLCGIPEDS VHIPQLGSVA GTFNFRQWTD ALSAVVSPWD HRLRGKHDFV PELVPHVIVP SDVDELRDRL RDLFSSHVIS LVENGESVRK
0201: VRREIDEKSS RVESFDSKRG LRLEVFEMKK ALEAERDLVI KRLEEFKNAM MSIVRFLKRS DDGVEVDDVD VFSLEGDYDW PRVHSLIRRE CRRLDDGLPI
0301: YAYRQNILKK VYGQQVTVLI GETGSGKSTQ LVQFLADSGI AASESIVCTQ PRKIAALTLA DRVREESNGC YEEEDSVSCT PAYSSAEKFS AKVVFMTDNC
0401: LLQHYIRDNS LSGVSCVIID EAHERSLNTD LVLALLKDLM CRRVDLRLVI MSATADAYQL SGYFFGCEIL RVTGRNFPVE IIYSPSGDTE GTSYADDVVK
0501: KAMEVHRTEK EGTILAFLTS QAEVEWACER FIAPSAVALP LHGKLSFEEQ FRVFQNYPGR RKVIFATNIA ETSLTIPGVK YVIDSGMVKE SKYEARTGMS
0601: ILKVCRVSKS SAQQRAGRAG RTEAGRCYRL YSKYEFTSMS LNQEPEIRRV PLGVAILRIL ALGVDNLADF DFIDAPDPEA VVMAVKNLVQ LGAVVERNGV
0701: LELTQEGHCL VKLGLEPKLG KLILGCFRHR MGKEGIVLAA VMANASSIFC RVGNFDDKMK ADCLKVKFCN HDGDLFTLLS VYKEWASLPR ERRNKWCWEN
0801: SLNAKSMRRC EDTVKELEIC IERELSLVSP SYWVWNPAEG NNKHEKHMKM VILASLAENV AMYTGYDQLG YEVALTGQQV QLHPSCSLLA FGQKPNWVVF
0901: GELLSVVDQY LVCVTAFDFE ALSTLDPPPP FDASHMDEWR VRVKKVAGCS STMLKRFCGK SNRGLLSIVS RARSLCEDER INIQVNVEQN EILMYAPPHD
1001: MDKVSALVND ALECEKKLMR NECLEKYIYH GGGQVPLALF GSGAQIKHLE VDQRFLTVDV LYYGDNSLDD REVLTFLEKE IDGCICSIHK YAGKKQDCDE
1101: KEKWGRVTFL TPESAMKATE TQKFDLNGSV IKLFPSLSAG GEGVFKMPSV TAIIRWPRRE SCGKGVLKCA SGDIHRIFAG SSGIMIGTKY CPFETDQKHT
1201: DSILITGIDT NLSDAEVLDV LEFATERTDL EFFLFRGGNI AYRPSLTDCK YMLHKRIFAR LSSRNPDPNC VEVKVYVPKE KDHFVRALIT FDGRLHLEAA
1301: KALQELDGTI LDGCYPWQKI KCEQKFQSSI ICPAFIYNIV RRQLYAKLAS FERQRECEWH LEAIHSGAYR VKISANATRR ISEMRRSLEE LIRGRPIINH
1401: PSLTQRVLQH LLSREGVILM RKIQQETETC IVVDRHSLAV RICGSEERIA AAEQELVRSL LSYHESKQLE IRLRGPNLRP DLMKEVVNRF GPELQGIKEK
1501: VKGVDLKLNT RYHVIHVHGS VEMRQEVEKM VYELTQEEGC APDDVEVECP ICLSEVEDGY SLEGCSHLFC KACLLEQLEA SMRNFDAFPI ICSHIDCGAP
1601: IVVADMRALL SQEKLDELFR ASLSSFVTTS DGKFRFCSTP DCPSIYRVAG PLDSGVPFFC GACNSKTCTR CHLEYHRYIT CERYKLFKED PDMSLKDWAK
1701: GKNVKECPCC KSTIEKSEGC NHLLCRCGNH ICWVCLRWFA QQEPCYEHLR AVHGGIGLFD ELGMAML
0101: SVRKQAIITL ASLCGIPEDS VHIPQLGSVA GTFNFRQWTD ALSAVVSPWD HRLRGKHDFV PELVPHVIVP SDVDELRDRL RDLFSSHVIS LVENGESVRK
0201: VRREIDEKSS RVESFDSKRG LRLEVFEMKK ALEAERDLVI KRLEEFKNAM MSIVRFLKRS DDGVEVDDVD VFSLEGDYDW PRVHSLIRRE CRRLDDGLPI
0301: YAYRQNILKK VYGQQVTVLI GETGSGKSTQ LVQFLADSGI AASESIVCTQ PRKIAALTLA DRVREESNGC YEEEDSVSCT PAYSSAEKFS AKVVFMTDNC
0401: LLQHYIRDNS LSGVSCVIID EAHERSLNTD LVLALLKDLM CRRVDLRLVI MSATADAYQL SGYFFGCEIL RVTGRNFPVE IIYSPSGDTE GTSYADDVVK
0501: KAMEVHRTEK EGTILAFLTS QAEVEWACER FIAPSAVALP LHGKLSFEEQ FRVFQNYPGR RKVIFATNIA ETSLTIPGVK YVIDSGMVKE SKYEARTGMS
0601: ILKVCRVSKS SAQQRAGRAG RTEAGRCYRL YSKYEFTSMS LNQEPEIRRV PLGVAILRIL ALGVDNLADF DFIDAPDPEA VVMAVKNLVQ LGAVVERNGV
0701: LELTQEGHCL VKLGLEPKLG KLILGCFRHR MGKEGIVLAA VMANASSIFC RVGNFDDKMK ADCLKVKFCN HDGDLFTLLS VYKEWASLPR ERRNKWCWEN
0801: SLNAKSMRRC EDTVKELEIC IERELSLVSP SYWVWNPAEG NNKHEKHMKM VILASLAENV AMYTGYDQLG YEVALTGQQV QLHPSCSLLA FGQKPNWVVF
0901: GELLSVVDQY LVCVTAFDFE ALSTLDPPPP FDASHMDEWR VRVKKVAGCS STMLKRFCGK SNRGLLSIVS RARSLCEDER INIQVNVEQN EILMYAPPHD
1001: MDKVSALVND ALECEKKLMR NECLEKYIYH GGGQVPLALF GSGAQIKHLE VDQRFLTVDV LYYGDNSLDD REVLTFLEKE IDGCICSIHK YAGKKQDCDE
1101: KEKWGRVTFL TPESAMKATE TQKFDLNGSV IKLFPSLSAG GEGVFKMPSV TAIIRWPRRE SCGKGVLKCA SGDIHRIFAG SSGIMIGTKY CPFETDQKHT
1201: DSILITGIDT NLSDAEVLDV LEFATERTDL EFFLFRGGNI AYRPSLTDCK YMLHKRIFAR LSSRNPDPNC VEVKVYVPKE KDHFVRALIT FDGRLHLEAA
1301: KALQELDGTI LDGCYPWQKI KCEQKFQSSI ICPAFIYNIV RRQLYAKLAS FERQRECEWH LEAIHSGAYR VKISANATRR ISEMRRSLEE LIRGRPIINH
1401: PSLTQRVLQH LLSREGVILM RKIQQETETC IVVDRHSLAV RICGSEERIA AAEQELVRSL LSYHESKQLE IRLRGPNLRP DLMKEVVNRF GPELQGIKEK
1501: VKGVDLKLNT RYHVIHVHGS VEMRQEVEKM VYELTQEEGC APDDVEVECP ICLSEVEDGY SLEGCSHLFC KACLLEQLEA SMRNFDAFPI ICSHIDCGAP
1601: IVVADMRALL SQEKLDELFR ASLSSFVTTS DGKFRFCSTP DCPSIYRVAG PLDSGVPFFC GACNSKTCTR CHLEYHRYIT CERYKLFKED PDMSLKDWAK
1701: GKNVKECPCC KSTIEKSEGC NHLLCRCGNH ICWVCLRWFA QQEPCYEHLR AVHGGIGLFD ELGMAML
0001: MRNSFPPSDG GRSATDRRQQ SSHSSSTNRY NSRSAQSSPP LNHRPTWNQQ HSQYPNSNFP PNYRRDRNPS SGYSPPVTRA RPNFIVQLLH PAAANSDTKL
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
Arabidopsis Description
ATP-dependent RNA helicase DEAH12, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4KGU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.