Factsheet for Bra009414.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70187	Canola	mitochondrion	99.83	99.74
CDX98799	Canola	mitochondrion	99.48	99.57
AT5G04895.1	Thale cress	mitochondrion	94.29	93.8
KRH44757	Soybean	plastid	80.61	80.19
Solyc01g006710.2.1	Tomato	mitochondrion	78.36	77.75
PGSC0003DMT400055091	Potato	mitochondrion	78.01	77.41
Os03t0748800-01	Rice	mitochondrion	75.76	76.09
GSMUA_Achr4P07530_001	Banana	mitochondrion	76.62	75.97
KXG37551	Sorghum	nucleus, vacuole	75.41	75.61
TraesCS5B01G392800.1	Wheat	nucleus	74.89	75.22
TraesCS5D01G397600.1	Wheat	nucleus	74.89	75.22
TraesCS5A01G387700.2	Wheat	golgi, nucleus	74.81	74.81
HORVU5Hr1G094990.5	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	74.37	74.7
Zm00001d034013_P002	Maize	golgi, mitochondrion, vacuole	75.5	72.73
Bra018747.1-P	Field mustard	plastid	59.13	57.88
Bra024903.1-P	Field mustard	nucleus	55.5	56.48
Bra023043.1-P	Field mustard	nucleus	40.61	47.14
Bra001237.1-P	Field mustard	cytosol	13.77	36.81
Bra001238.1-P	Field mustard	cytosol, mitochondrion	8.23	35.98
Bra003744.1-P	Field mustard	nucleus	20.52	35.37
Bra007671.1-P	Field mustard	nucleus	20.0	32.17
Bra000445.1-P	Field mustard	cytosol	20.09	32.09
Bra040328.1-P	Field mustard	cytosol, mitochondrion	5.8	31.31
Bra010915.1-P	Field mustard	nucleus	18.01	29.5
Bra013313.1-P	Field mustard	nucleus	17.49	28.98
Bra011023.1-P	Field mustard	nucleus	17.23	28.88
Bra024720.1-P	Field mustard	nucleus	17.4	27.31
Bra038498.1-P	Field mustard	nucleus	19.91	25.53
Bra021665.1-P	Field mustard	nucleus	27.19	24.06
Bra018293.1-P	Field mustard	plasma membrane, vacuole	27.27	23.86
Bra010168.1-P	Field mustard	nucleus	20.69	22.89
Bra025211.1-P	Field mustard	nucleus	22.08	21.78
Bra027890.1-P	Field mustard	nucleus	24.68	21.43
Bra023387.1-P	Field mustard	nucleus	22.16	20.51
Bra040091.1-P	Field mustard	nucleus	12.29	17.95
Bra032998.1-P	Field mustard	nucleus	18.27	17.06
Bra006057.1-P	Field mustard	plastid	21.82	14.36
Bra009038.1-P	Field mustard	plastid	21.47	14.04

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra009414	EnsemblPlants:Bra009414.1
EnsemblPlants:Bra009414.1-P	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014720	UniProt:M4CYW7
InterPro:P-loop_NTPase	PFAM:PF00035	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF103	SMART:SM00358	SMART:SM00487
SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	SUPFAM:SSF54768	UniParc:UPI000254777F	InterPro:dsRBD_dom
SEG:seg	:	:	:	:	:

Description

AT5G04895 (E=0.0) | ATP binding / ATP-dependent helicase/ double-stranded RNA binding / helicase/ nucleic acid binding

Coordinates

chrA10:-:16531780..16536943

Molecular Weight (calculated)

130103.0 Da

IEP (calculated)

8.973

GRAVY (calculated)

-0.360

Length

1155 amino acids

Sequence
(BLAST)

0001: MRFTKRISFF LWQATKLPTR SLPRNPSLCR SYHIVGAPIS SGDVVKGLSY GQIRRRFIGY TAEQFSDDEY ECEFEEHKAS SSVANVDEWK WKLGILLAND
0101: SEREIVSRDK RDRRDYEQIS NLAKRMGLYS EIYGKVVVAS KVPLPNYRPD LDDKRPQREV VLPLSLQRRV EGLLQEHLDR QQLNSGKANE SEADSQPPKQ
0201: TEELPDESSD AFLDGSVMEK VLQRRSMRMR NMQRAWQESP EGRTMLEFRK SLPSFKDKER LLQAIARNQV IVVSGETGCG KTTQLPQYIL ESEIESGRGA
0301: FCNIICTQPR RISAMAVAER VSAERGEPLG ETVGFKVRLE GMRGKNTQLL FCTSGILLRR LLSDRNLNGI THVFVDEIHE RGMNEDFLII VLKELLPRRP
0401: DLRLVLMSAT LNAELFSNYF GGAPTIHIPG FTHPVKAHFL EDVLEMTGYK LTSFNQVDDY GQEKTWKTQK QLMPRKRKNQ ITSLVEEALS KSTFESYSSR
0501: TRDSLSSWMP DCVGFNLIEA VLCHICRKER PGAVLVFLTG WDDISSLRDQ IKAHPLLGDP NRVLLLMCHG SMATAEQRLI FERAPPNIRK IVLATNMAEA
0601: SITINDVVFV VDCGKAKETT YDALNNTPCL LPSWISQASA RQRRGRAGRL LPGECYHLYP KCVYEAFSEY QLPELLRTPL NSLCLQIKSL QVESIAGFLS
0701: AALQAPEPLT VQNAIGFLKM IGALDEKENL TDLGKLLSIL PVDPKLGKML IMGAIFHCFD PILTIVSGLS VRDPFLLPQE KKDLALSAKL RFSAKDYSDH
0801: MALVRAFEGW KNAEREGSAY EYCWRNFLSA QTLQAIHSLR KQFNYILKEA GLVHDDSALN NKLSHNQSLV RAVICSGLFP GIASVVHRET SMSFKTMDDG
0901: QVSLYANSVN SRFPTIPYPW LVFGEKVKVN AVLIRDSTGV PDSSLILFGG ALSTGVQVGH LKMLDGYIDF FMDPNLADSY VKLKEELNKL LQKKANPSVD
1001: IHKEGKYLML AVQELVAGDQ CEGRFVFGRD TKRPSQPQLA GENNKLSKDG TNPKSLLQTL LMRAGHSPPK YKTKHLKTNE FRALVEFKGM QFVGKPQRNK
1101: TLAEKDAAVE ALAWLTHTSD NSTDQYSGDA DSPPDVTDNM LKLLGGKRRR RSKGK

Best Arabidopsis Sequence Match ( AT5G04895.1 )
(BLAST)

0001: MRFTKRISLF LGQTTRIHSR SLLGNPTLCR SYIVGPVSTS SPAFLISSRN GDGVTGLYYP IRRRFIGHTA EQFSDDEYEC EFEEHKASSS VANVDEWKWK
0101: LGILLANDSE QEIVSRDKRD RRDYEQISNL AKRMGLYSEI YGKVVVASKV PLPNYRPDLD DKRPQREVVL PLSLQRRVEG LLQEHLDSQQ LSSGKANECV
0201: ADSQPPKQTE ELPDENSDSF LDGSVMEKVL QRRSMRMRNM QRTWQESPEG RTMLEFRKTL PSFKDKERLL QAIARNQVIV VSGETGCGKT TQLPQYILES
0301: EIESGRGAFC NIICTQPRRI SAMAVSERVS AERGEPLGET VGFKVRLEGM RGKNTHLLFC TSGILLRRLL SDRNLNGVTH VFVDEIHERG MNEDFLIIVL
0401: KELLPRRPDL RLVLMSATLN AELFSNYYGG APTIHIPGFT HPVKAHFLED VLEITGYKLT SFNQVDDYGQ EKTWKTQKQL MPRKRKNQIT TLVEEALSKS
0501: NFESYNSRTR DSLSSWMPDC IGFNLIEAVL CHICRKERPG AVLVFLTGWD DIRSLSDQIK AHPLLGDPNR VLLLMCHGSM ATAEQRLIFE RAPPNIRKIV
0601: LATNMAEASI TINDVVFVVD CGKAKETTYD ALNNTPCLLP SWISQASARQ RRGRAGRLFP GECYHLYPKC VYDAFAEYQL PELLRTPLNS LCLQIKSLQV
0701: ESIAEFLSAA LQAPESLAVQ NAIGFLKMIG ALDEKENLTD LGKLLSILPV DPKLGKMLIM GAIFRCFDPI LTIVSGLSVR DPFLLPQDKK DLALSAKLRF
0801: SAKDYSDHMA LVRAFEGWKD AEREGSAYEF CWRNFLSAQT LQAIHSLRKQ FNYILKEAGL VHDDLALNNK LSHNQSLVRA VICSGLFPGI ASVVHRETSM
0901: SFKTMDDGQV SLYANSVNSR FPTIPYPWLV FGEKVKVNAV LIRDSTGVPD SSLILFGGSL STGVQVGHLK MLDGYIDFFM DPNLAESYVK LKEELDKLLQ
1001: KKLEDPSMDI HKEGKYLMLA VQELVAGDQC EGRFVFGRDT KRPSQPQIGE NKHSKDGTNP KSLLQTLLMR AGHSPPKYKT KHLKTNEFRA LVEFKGMQFV
1101: GKPQRNKTLA EKDAAVEALA WLTHTSDNST GQHNEDADSP PDVTDNMLKL LGGRRRRSKG K

Arabidopsis Description

ATP-dependent RNA helicase A-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FF84]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.