Factsheet for Bra011023.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36075	Canola	nucleus	97.1	99.26
Bra024720.1-P	Field mustard	nucleus	86.65	81.11
AT1G26370.1	Thale cress	plastid	81.86	78.66
KRH70930	Soybean	nucleus	68.8	67.23
KRH75071	Soybean	nucleus	68.36	66.81
PGSC0003DMT400009842	Potato	mitochondrion	36.14	66.05
VIT_01s0137g00640.t01	Wine grape	nucleus	68.51	65.01
Os06t0192500-02	Rice	mitochondrion	37.45	63.24
Solyc09g008120.2.1	Tomato	nucleus	65.17	63.15
KXG22666	Sorghum	nucleus	63.86	62.41
TraesCS7A01G156700.1	Wheat	plastid	63.72	61.57
TraesCS7D01G157100.1	Wheat	plastid	63.72	61.57
TraesCS7B01G060800.1	Wheat	plastid	63.43	61.29
Zm00001d011963_P002	Maize	plasma membrane	63.28	60.47
HORVU7Hr1G032080.3	Barley	plastid	63.72	53.6
GSMUA_Achr5P05110_001	Banana	nucleus	64.59	43.8
Bra003744.1-P	Field mustard	nucleus	40.2	41.34
Bra001237.1-P	Field mustard	cytosol	25.54	40.74
Bra040328.1-P	Field mustard	cytosol, mitochondrion	12.63	40.65
Bra007671.1-P	Field mustard	nucleus	40.64	39.0
Bra013313.1-P	Field mustard	nucleus	39.33	38.88
Bra000445.1-P	Field mustard	cytosol	40.78	38.87
Bra001238.1-P	Field mustard	cytosol, mitochondrion	14.08	36.74
Bra010915.1-P	Field mustard	nucleus	35.99	35.18
Bra038498.1-P	Field mustard	nucleus	41.94	32.08
Bra010168.1-P	Field mustard	nucleus	44.27	29.21
Bra025211.1-P	Field mustard	nucleus	44.99	26.47
Bra023387.1-P	Field mustard	nucleus	38.32	21.15
Bra023043.1-P	Field mustard	nucleus	29.46	20.4
Bra040091.1-P	Field mustard	nucleus	23.08	20.1
Bra032998.1-P	Field mustard	nucleus	33.82	18.84
Bra018747.1-P	Field mustard	plastid	31.35	18.31
Bra024903.1-P	Field mustard	nucleus	30.04	18.24
Bra009414.1-P	Field mustard	mitochondrion	28.88	17.23
Bra021665.1-P	Field mustard	nucleus	27.87	14.71
Bra018293.1-P	Field mustard	plasma membrane, vacuole	27.72	14.47
Bra027890.1-P	Field mustard	nucleus	25.25	13.08
Bra009038.1-P	Field mustard	plastid	32.95	12.85
Bra006057.1-P	Field mustard	plastid	32.51	12.76

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.1.7	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra011023	EnsemblPlants:Bra011023.1	EnsemblPlants:Bra011023.1-P
InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	UniProt:M4D3G9	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF85
SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI0002546019	SEG:seg

Description

AT1G26370 (E=2e-232) | RNA helicase, putative

Coordinates

chrA08:-:17629012..17631924

Molecular Weight (calculated)

78170.3 Da

IEP (calculated)

8.197

GRAVY (calculated)

-0.306

Length

689 amino acids

Sequence
(BLAST)

001: MAQGELKSSV LNRKRNPKSP VASRSSKRQK IAEHRKSLPI ASEEERLIEA VQKNDILIIV GETGSGKTTQ LPQFLFNAGF CREGKMVGIT QPRRIAALTI
101: AKRVAEECDV RLGQKVGYSV RFDDTTSSST RLKYMTDGFL LREALVDRLL SRYSVIIIDE AHERTVHTDV LLALLKKVQR ERSEIGGGVL RGCQGRKVSP
201: LKLIIMSASL DARVFCDYYG GAKDFRVEGR QFDVDIFYTV HPETDYVDAA LNTIFQIHSE EEEGDILVFL TGQEEIESVE RLVQEKLKHL PEDERKLLPL
301: AIFSALPSEQ QMRVFAPAPI GFRKVVLATN IAETSITIPG IRYVVDSGVV KARTYDPNKG METLDVVPVS KAQAIQRSGR AGRDGYGKSF HLYPERDFWK
401: LEDSTKPEIK RCNLSNVILQ LKALGIDDIL GFDFIDKPSR SAIVKALAEL HLLGALTDDC KLAKPAGEQM ARLPLEPVYS RALILANQFN CLEEMLIIVA
501: MLSVESIFYD PRQKREEART SRNHFVSVEG DHLTYLSVYR ELDEFLEERK AEKSEAKVEK IMRKWCKVNF VNSRSLKHAR DIYRQIRGNV EQMGFNVSSC
601: GNDMLEYRRC IAASFFLKAA QRQMDGTYRA LESGEIVHIH PSSVLFRSKP ECVIFDELMQ TSQKYINNLT RIDPLWLAEL APHHYKTEE

Best Arabidopsis Sequence Match ( AT1G26370.1 )
(BLAST)

001: MPSMAQGELK SFVQNSRPNP KSPTVSPFSM RQKIAEHRRS LPIASVEKRL VEEVQKNDIL IIVGETGSGK TTQLPQFLYN AGFCREGKMI GITQPRRIAA
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE

Arabidopsis Description

RID1Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Source:UniProtKB/Swiss-Prot;Acc:F4IE66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.