Factsheet for Bra001237.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74061	Canola	cytosol	73.61	99.07
Bra001238.1-P	Field mustard	cytosol, mitochondrion	53.94	88.26
GSMUA_Achr1P18470_001	Banana	cytosol	43.29	52.53
Os03t0314100-01	Rice	cytosol, nucleus, plastid	61.34	46.99
Bra003744.1-P	Field mustard	nucleus	63.89	41.19
Bra007671.1-P	Field mustard	nucleus	63.89	38.44
Bra000445.1-P	Field mustard	cytosol	63.89	38.17
KRH68290	Soybean	nucleus	63.43	38.06
TraesCS4A01G124200.2	Wheat	cytosol	63.19	37.97
KRH69191	Soybean	nucleus	63.43	37.95
HORVU4Hr1G052730.3	Barley	cytosol	63.19	37.86
TraesCS4D01G181700.1	Wheat	cytosol	63.19	37.86
TraesCS4B01G180200.1	Wheat	cytosol	63.19	37.86
KRG96553	Soybean	nucleus	63.19	37.86
PGSC0003DMT400023284	Potato	nucleus	63.19	37.76
Solyc01g079250.2.1	Tomato	nucleus	63.19	37.76
KXG39505	Sorghum	cytosol	62.5	37.4
VIT_07s0005g01770.t01	Wine grape	nucleus	62.96	37.36
Zm00001d028923_P002	Maize	nucleus	62.27	37.31
KRH31768	Soybean	cytosol, nucleus	49.07	36.74
Zm00001d047601_P006	Maize	nucleus	61.81	34.54
Bra013313.1-P	Field mustard	nucleus	44.21	27.4
Bra010915.1-P	Field mustard	nucleus	42.36	25.96
Bra011023.1-P	Field mustard	nucleus	40.74	25.54
Bra024720.1-P	Field mustard	nucleus	41.44	24.32
Bra038498.1-P	Field mustard	nucleus	46.06	22.09
Bra040328.1-P	Field mustard	cytosol, mitochondrion	9.95	20.09
Bra010168.1-P	Field mustard	nucleus	47.92	19.83
Bra025211.1-P	Field mustard	nucleus	47.69	17.59
Bra023043.1-P	Field mustard	nucleus	37.5	16.28
Bra023387.1-P	Field mustard	nucleus	42.36	14.66
Bra009414.1-P	Field mustard	mitochondrion	36.81	13.77
Bra024903.1-P	Field mustard	nucleus	34.72	13.22
Bra032998.1-P	Field mustard	nucleus	37.73	13.18
Bra018747.1-P	Field mustard	plastid	35.65	13.05
Bra018293.1-P	Field mustard	plasma membrane, vacuole	29.63	9.7
Bra021665.1-P	Field mustard	nucleus	29.17	9.66
Bra040091.1-P	Field mustard	nucleus	17.36	9.48
Bra027890.1-P	Field mustard	nucleus	25.46	8.27
Bra009038.1-P	Field mustard	plastid	33.56	8.21
Bra006057.1-P	Field mustard	plastid	33.33	8.21

Protein Annotations

Gene3D:1.10.10.2130	Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra001237	EnsemblPlants:Bra001237.1	EnsemblPlants:Bra001237.1-P
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M4CAK8	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF193
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002540460	SEG:seg	:

Description

AT3G62310 (E=8e-144) | RNA helicase, putative

Coordinates

chrA03:-:15461144..15462442

Molecular Weight (calculated)

49223.0 Da

IEP (calculated)

5.721

GRAVY (calculated)

-0.154

Length

432 amino acids

Sequence
(BLAST)

001: MMMKKKSERR NLPVWGQKEE FVRTLKENQM VMVTGETGSG KTTQIPQFVL EAMMDEIPRS DDQWLIGCTQ PHRVAAMTAA RRVAEEMDVK LGEEVGYTVR
101: FEDLSSPRTV LKYLTDVMLL REAMVDPLFL RYKVIIVDEV HDRSLATDLL ISILNRTLIS RPDLKLVVMS ATLQVFNKRY FTGAPLIKVP SGRLLHPVEI
201: LYTQEPVMDY LESAISKVIQ IHTCEPPGDV LVFLTGEEEI EQACSRIVRS LGDQVTVVPL YSSLPPALQH KIFDPTPPPH SVRKIIVSTN VAETSLSMDG
301: IVYVVDPGFS KQKNYSYLTT DELWFVSRIS QASAYQRAGR AGRKCFRLYT EKTFNDFMDK EIPEILRSNL VKTVLTLKRL GVEDLTYFEY IDPPSTRMLF
401: RGMEDLFHLG AMDDQGNLTN IGHMMESLEE PL

Best Arabidopsis Sequence Match ( AT3G62310.3 )
(BLAST)

001: MGTERKRKIS LFDVMDDPSA PAKNAKTSGL PDGGINSLIN KWNGKPYSQR YYDILEKRRT LPVWLQKEEF LKTLNNNQTL ILVGETGSGK TTQIPQFVID
101: AVDAETSDKR RKWLVGCTQP RRVAAMSVSR RVAEEMDVTI GEEVGYSIRF EDCSSPRTVL KYLTDGMLLR EAMADPLLER YKVIILDEAH ERTLATDVLF
201: GLLKEVLKNR PDLKLVVMSA TLEAEKFQDY FSGAPLMKVP GRLHPVEIFY TQEPERDYLE AAIRTVVQIH MCEPPGDILV FLTGEEEIED ACRKINKEVG
301: NLGDQVGPIK VVPLYSTLPP AMQQKIFDPA PEPVTEGGPP GRKIVVSTNI AETSLTIDGI VYVIDPGFAK QKVYNPRIRV ESLLVSPISK ASAHQRSGRA
401: GRTRPGKCFR LYTEKSFNND LQPQTYPEIL RSNLANTVLT LKKLGIDDLV HFDFMDPPAP ETLMRALEVL NYLGALDDDG NLTKTGEIMS EFPLDPQMAK
501: MLIVSPEFNC SNEILSVSAM LSVAVSQLFS LMKQMVSVSS PLCIC

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZQ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.