Factsheet for Bra038498.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60185	Canola	nucleus	93.56	98.14
AT4G16680.2	Thale cress	nucleus	70.37	79.65
Os08t0335000-00	Rice	cytosol, nucleus	27.08	66.48
Bra040328.1-P	Field mustard	cytosol, mitochondrion	15.65	65.89
GSMUA_Achr4P23370_001	Banana	nucleus	51.05	61.33
PGSC0003DMT400005723	Potato	nucleus	55.49	60.83
Zm00001d049980_P001	Maize	plasma membrane	47.06	60.74
Solyc12g017700.1.1	Tomato	nucleus	55.38	56.32
Bra010168.1-P	Field mustard	nucleus	61.82	53.35
KXG30390	Sorghum	nucleus	60.16	51.82
EES02741	Sorghum	nucleus	59.71	51.43
TraesCS4D01G362600.1	Wheat	nucleus	59.49	51.24
TraesCS4B01G374800.1	Wheat	nucleus	59.49	51.24
Bra003744.1-P	Field mustard	nucleus	36.18	48.66
HORVU4Hr1G088270.17	Barley	mitochondrion	57.16	47.69
Bra007671.1-P	Field mustard	nucleus	37.07	46.52
Bra001237.1-P	Field mustard	cytosol	22.09	46.06
Bra000445.1-P	Field mustard	cytosol	36.52	45.5
Bra013313.1-P	Field mustard	nucleus	34.3	44.33
Bra001238.1-P	Field mustard	cytosol, mitochondrion	12.99	44.32
Bra011023.1-P	Field mustard	nucleus	32.08	41.94
Bra010915.1-P	Field mustard	nucleus	31.41	40.14
Bra024720.1-P	Field mustard	nucleus	32.74	40.08
Bra025211.1-P	Field mustard	nucleus	44.17	33.99
Bra040091.1-P	Field mustard	nucleus	24.86	28.32
Bra023387.1-P	Field mustard	nucleus	37.96	27.4
Bra023043.1-P	Field mustard	nucleus	26.08	23.62
Bra024903.1-P	Field mustard	nucleus	26.19	20.79
Bra032998.1-P	Field mustard	nucleus	28.52	20.78
Bra018747.1-P	Field mustard	plastid	26.97	20.59
Bra009414.1-P	Field mustard	mitochondrion	25.53	19.91
Bra021665.1-P	Field mustard	nucleus	23.53	16.25
Bra018293.1-P	Field mustard	plasma membrane, vacuole	23.64	16.14
Bra027890.1-P	Field mustard	nucleus	21.75	14.74
Bra006057.1-P	Field mustard	plastid	26.86	13.79
Bra009038.1-P	Field mustard	plastid	26.3	13.41

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.1.5	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra038498	EnsemblPlants:Bra038498.1	EnsemblPlants:Bra038498.1-P
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M4FBN2
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF117	SMART:SM00487	SMART:SM00490
SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI00025444F3	SEG:seg	:	:

Description

AT4G16680 (E=0.0) | RNA helicase, putative

Coordinates

chrA01:+:10843729..10846434

Molecular Weight (calculated)

103443.0 Da

IEP (calculated)

8.638

GRAVY (calculated)

-0.571

Length

901 amino acids

Sequence
(BLAST)

001: MEMHSKVQVR SSSVVDMDLD VIEETVDRSV SEEKPSLRSV SVKFKLNIAK KSFRKRSRQE SEKDEEEDEE DGRVLGNYEI ARLREESRRE YLKMRENKKV
101: EEFKEQVEFE LSLFEGVKLT EKEEIEFRYK KELYKLLNTT WDDVGYYKIP DAYDQEGGVD QRKRFAVARQ RYGEVTREKE AWEDHQAQKA TVRFGAKDKK
201: QVSDGYEFVF DEVTSFVETS VEAEKDRGYD ERRVAKDDRK MLPIYAYRDE LLKLVEENQV LVIVGETGSG KTTQIPQYLQ EAGYTKRGKI GCTQPRRVAA
301: MSVAARVAQE LGVKLGHQVG YSIRFEDCTS EKTVIKYMTD GMLLRELLIE PKLDSYSVII VDEAHERTLS TDILFGLVKD LAKARPDLRL IISSATLEAK
401: KFSEYFDSAR IYMIPGRRYP VEKLFQRCPE PDRLETAVRT VFQIHQREPL GDVLVFLTGQ EEIETAETKL KEMMKDLGSK SSEIIICPIY SNLPTELQAK
501: VFDPAPKGTR KVVLATNIAE TSLTIEGIRY VVDPGYCKIN SYNPKTGMES LLETPISKAS AEQRAGRSGR TGPGKCFRLY NVKDLEPTTI PEVQRANLAS
601: VVLTLKSLGI DDVFNFDFMD PPPEKSLMKA LELLYALGAL DGKSYITKLG ERMVEFPVDP MLSKMIVGSE KYKCSAEIIT IAAMLSTGSS IFYRPTRNQQ
701: YLADNARMSF YTDNAGDHIA LLRVYNSWKE MNYSSQWCYE NYIQSKSMRR ARDIREQLAG LLKRIGVELT SNSEDLDAVK KAILAGFFPH SAKLQKDGSY
801: RRVREPQTVY VHPSSGLFGA SPKKWLVYHE LVLTTKEYMR HTTEMKPEWL VEIAPHYYKL KDIEGTRTKK SQSRNIRSLM LMVDTNTKAK RKVDTNKKAK
901: R

Best Arabidopsis Sequence Match ( AT4G16680.2 )
(BLAST)

001: MREVIEFRYK RALYELVKKT EDDDDVEGYR FPDAYDQEGC IDQKKRFDVA KERYCERRRS GRVVTEQEAW EDHQAQKARV RFGAKDKKQV VDGYEFVFDD
101: LTGFVEESSE AETGKHRGCY SKTAAEKARE GREFLPIHGY REELLKLIEE NQVLVIVGET GSGKTTQIPQ YLQEAGYTKR GKIGCTQPRR VAAMSVASRV
201: AQEVGVKLGH EVGYSIRFED CTSEKTVIKY MTDGMLLREL LIEPKLDSYS VIIIDEAHER TLSTDILFAL VKDVAKVRPD LRLIISSATL EAKKFSEYFD
301: SARIYLIPGR RYPVEKLFRK CPEPDYLETV IRTVVQIHQT EAIGDILVFL TGQEEIETVE TNLKRRMMDL GTKGSEIIIC PIYSNLPTPL QAKVFEPAPK
401: GTRKVVLATN IAETSLTIDG VKYVIDPGYC KINSYNPRTG MESLLVTPIS KASAAQRAGR SGRTGPGKCF RLYNIKDLEP TTIPEIQRAN LASVVLTLKS
501: LGIQDVFNFD FMDPPPENAL LKALELLYAL GALDEIGEIT KVGERMVEFP VDPMLSKMIV GSEKYKCSKE IITIAAMLSV GNSVFYRPKN QQVFADKARM
601: DFYEDTENVG DHIALLRVYN SWKEENYSTQ WCCEKFIQSK SMKRARDIRD QLLGLLNKIG VELTSNPNDL DAIKKAILAG FFPHSAKLQK NGSYRRVKEP
701: QTVYVHPNSG LFGASPSKWL VYHELVLTTK EYMRHTTEMK PEWLIEIAPH YYKLKDIEDT RPKKTQRRIE EASTSKVDTN KKTRTSKVDT NKKSKR

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT4G16680]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.