Factsheet for Bra018747.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93688	Canola	plastid	99.66	99.66
AT1G48650.2	Thale cress	nucleus, plastid	91.02	89.05
VIT_17s0000g03030.t01	Wine grape	nucleus	67.97	75.88
Os01t0118100-01	Rice	cytosol, mitochondrion, nucleus	50.93	73.47
KRH41772	Soybean	plastid	70.25	70.43
KRH60477	Soybean	plastid	70.0	70.0
Solyc03g118920.2.1	Tomato	mitochondrion, nucleus	67.97	66.78
Bra024903.1-P	Field mustard	nucleus	61.19	63.61
TraesCS3A01G021300.1	Wheat	extracellular	67.03	63.59
KXG32067	Sorghum	mitochondrion	66.86	63.58
TraesCS3B01G024900.1	Wheat	mitochondrion	67.03	63.43
HORVU3Hr1G002800.8	Barley	mitochondrion	66.86	63.27
TraesCS3D01G025600.1	Wheat	mitochondrion, nucleus, plastid	66.19	62.88
GSMUA_Achr3P20920_001	Banana	mitochondrion, nucleus	66.61	62.83
Bra009414.1-P	Field mustard	mitochondrion	57.88	59.13
Zm00001d040082_P003	Maize	plastid	64.58	54.16
Bra023043.1-P	Field mustard	nucleus	37.46	44.42
Bra003744.1-P	Field mustard	nucleus	20.34	35.82
Bra001237.1-P	Field mustard	cytosol	13.05	35.65
Bra001238.1-P	Field mustard	cytosol, mitochondrion	7.71	34.47
Bra040328.1-P	Field mustard	cytosol, mitochondrion	6.02	33.18
Bra007671.1-P	Field mustard	nucleus	20.17	33.15
Bra000445.1-P	Field mustard	cytosol	20.17	32.92
Bra011023.1-P	Field mustard	nucleus	18.31	31.35
Bra010915.1-P	Field mustard	nucleus	18.31	30.64
Bra013313.1-P	Field mustard	nucleus	17.97	30.42
Bra024720.1-P	Field mustard	nucleus	18.22	29.21
Bra038498.1-P	Field mustard	nucleus	20.59	26.97
Bra021665.1-P	Field mustard	nucleus	27.88	25.21
Bra018293.1-P	Field mustard	plasma membrane, vacuole	28.05	25.08
Bra010168.1-P	Field mustard	nucleus	21.86	24.71
Bra025211.1-P	Field mustard	nucleus	22.29	22.46
Bra023387.1-P	Field mustard	nucleus	22.54	21.31
Bra027890.1-P	Field mustard	nucleus	23.9	21.2
Bra032998.1-P	Field mustard	nucleus	19.15	18.27
Bra040091.1-P	Field mustard	nucleus	12.12	18.08
Bra006057.1-P	Field mustard	plastid	21.53	14.47
Bra009038.1-P	Field mustard	plastid	21.27	14.2

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra018747	EnsemblPlants:Bra018747.1
EnsemblPlants:Bra018747.1-P	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014720	UniProt:M4DQF4
InterPro:P-loop_NTPase	PFAM:PF00035	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF192	SMART:SM00487	SMART:SM00490
SMART:SM00847	SUPFAM:SSF52540	SUPFAM:SSF54768	UniParc:UPI000253ECD2	InterPro:dsRBD_dom	SEG:seg

Description

AT1G48650 (E=0.0) | helicase domain-containing protein

Coordinates

chrA06:+:2214961..2220120

Molecular Weight (calculated)

132788.0 Da

IEP (calculated)

9.344

GRAVY (calculated)

-0.319

Length

1180 amino acids

Sequence
(BLAST)

0001: MPYYSAIFRG HIKPNAVVGA ASMFIQHSSL HLFRTPNLLF SRPSSLVRSL HSQRSRVLSA KAGRSSLEWR VSNLPYFQKQ GYGRIAYNDY ESSDESDRDI
0101: VGSSQSQQMA GSTLDNIDQW RFKLTMLLRN REDQEVVSRE RKDRRDFDHI SAMATRMGLF SRQYSKIIVI SKSPLPNYRP DLDDKRPQRE VVLPFGLQSE
0201: VDAHLHAFLD QKKMLIPEMP RPNSSESLAT NYGNYENPEA VMQNSLARER ILRPRSLQLR SKQQQWVDSP EGQKMVEFRK TLPAYKEKEA LLRAISANQV
0301: IVVSGETGCG KTTQLPQYIL ESEIEAARGA ACSIICTQPR RISAISVSER VAAERGEQIG ESVGYKVRLE GMRGRDTRLL FCTTGVLLRR LLIDRSLKGV
0401: THVVVDEIHE RGMNEDFLLI VLKDLLPRRP DLKLILMSAT LNAELFSSYF GGAPAMHIPG FTYPVRAHFL EDFLETTGYR LTSYNQIDDY GEEKTWKMQK
0501: QAQFTKRKSQ ISSAVEGALE AADFKGYQFR TRDSLSCWSP DSMGFNLIEN VLCHIVKGER PGAVLVFMTG WDDINSLKKQ LEAHHLLGDP NKVLLLACHG
0601: SMASSEQRLI FDRPPEGVRK VVLATNMAET SITINDVVFV VDCGKAKETS YDALNNTPCL LPSWISKAAA RQRRGRAGRV MPGECYHLYP RCVYDAFADY
0701: QQPELLRTPL QSLCLQIKSL GLGSISEFLS RALQPPEALS VQNAVDYLKL IGALDDNENL TALGKNLSML PVEPKLGKML ILGAIFNCLD PIMTVVAGLS
0801: VRDPFLMPFD KKDLAESARS KFSGRDCSDH LTLIRAYSGW KEAERTRSGN EYCWQNFLSA QTLKAMDSMR KQFFFLLKEA SLIDNVESCS KLSYDEHLVR
0901: AIICAGLFPG VCSVVNKEKS ITLKTMEDGQ VLLYTSSVNG NVQRIPFPWL VFNEKIKVNS VFLRDSTAVS DSVLLLFGDK VSSGGFDGHL KMLGGYLEFF
1001: MKPSLAYTYL SLKRELDELI QNKLVNPKLD IQLYDKLMTA IRLLVSEDQC EGRFVFGRKA LSPTTTKKLK VVGTQLPNSG GENDKNHLQT VLARAGHGTP
1101: VYKTRQLKNN QFRAMVTFNG LDFMGKPCGS KKNAEKDAAH EALLWLQGES KSSLNDLNHM STLLKKDKSK KSARAPARWN

Best Arabidopsis Sequence Match ( AT1G48650.1 )
(BLAST)

0001: MQLYSAIFRG HIRPNAVVGA ASMFIQHNSI QLHRSPKLLL RPSSVVRSLH CRRSGGLVTH SQRSRVLCVK AARGDASSST LGIEWRAANL PYFQRQNSGY
0101: GRIAYNDYES SDESDRDVGS SQSQQMAGST LDNIDQWRFK LTMLLRNKED QEVVSRERKD RRDFDHISAL ATRMGLHSRQ YSKIVVISKA PLPNYRPDLD
0201: DKRPQREVVL PFGLQSEVDA HLHSFLDQKK TLIPEMPRQN SSESLANGYG NYETPETVMQ NSLARERILR PRSLQLKSKQ QQWVDSPEGQ KMVGFRKTLP
0301: AYKEKDALLK AIAANQVVVV SGETGCGKTT QLPQYILESE IEAARGATCS IICTQPRRIS AISVSERVAA ERGEQIGESV GYKVRLEGMR GRDTRLLFCT
0401: TGVLLRRLLV DRSLKGVTHV VVDEIHERGM NEDFLLIVLK DLLPRRPDLK LILMSATLNA ELFSSYFGGA PAMHIPGFTY PVRAHFLEDY LETSGYRLTT
0501: YNQIDDYGEE KTWKMQKQAQ FKKRKSLISS AVEDALEAAD FKGYNFRTRD SLSCWSPDSI GFNLIENVLC HIVKGERPGA VLVFMTGWDD INSLKNQLEA
0601: HSLLGDPNKV LLLACHGSMA SSEQRLIFDR PPEGIRKIVL ATNMAETSIT INDVVYVIDC GKAKETSYDA LNNTPCLLPS WISKAAARQR RGRAGRVMPG
0701: ECYHLYPRCV YEAFADYQQP ELLRTPLQSL CLQIKSLGLG SISEFLSRAL QPPEALSVQN AVEYLKIIGA LDDDENLTPL GKNLSMLPVE PKLGKMLILG
0801: AIFNCLDPVM TVVAGLSVRD PFLMPFDKKD LAETARSKFS GRDYSDHLTL VRAYNGWKDA ERTHSGYDYC WKNFLSSQTL KAMDSMRKQF FNLLKEASLI
0901: DNIEGCSKLS HDEHLVRAII CAGMFPGVCS VVNKEKSITL KTMEDGQVLL YSSSVNGNVP MIPFPWLVFN DKVKVNSVFL RDSTAVSDSV LLLFGDKISS
1001: GGFDGHLKML GGYLEFFMKP TLAYTYLSLK RELDELIQNK LVNPKLDIQL YDKLMTAIRL LVSEDQCEGR FVYGRKALSP TPAKKLKDVG AQLQNSGGEN
1101: NKNQLQTLLA RAGHGSPVYK TRQLKNNQFR SMVTFNGLDF MGKPCGSKKN AEKDAAHEAL LWLQGESKSS LNDLNHMSML LKKNKSKNHA KASTKWG

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4HYJ6]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.