Factsheet for Bra040091.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23338	Canola	cytosol	51.96	97.39
Bra025211.1-P	Field mustard	nucleus	87.74	59.27
PGSC0003DMT400084916	Potato	nucleus	59.04	58.3
GSMUA_Achr10P...	Banana	nucleus	71.81	58.26
AT3G26560.1	Thale cress	nucleus	85.59	57.96
Os02t0301500-01	Rice	nucleus	38.18	55.31
VIT_08s0056g00470.t01	Wine grape	nucleus	80.4	54.13
Solyc01g110990.2.1	Tomato	nucleus	73.96	52.66
Solyc07g039550.2.1	Tomato	nucleus	78.51	52.18
Zm00001d015893_P001	Maize	nucleus, plasma membrane	78.51	50.24
EER95349	Sorghum	nucleus	78.76	50.16
PGSC0003DMT400056692	Potato	nucleus	71.93	49.87
EES15324	Sorghum	nucleus	67.38	49.77
TraesCS4B01G148500.1	Wheat	nucleus	77.24	49.51
TraesCS4A01G158200.1	Wheat	nucleus	77.12	49.43
Os06t0343100-01	Rice	nucleus	67.26	49.08
HORVU0Hr1G007860.1	Barley	nucleus	76.86	48.95
TraesCS7B01G245800.1	Wheat	nucleus	65.23	47.96
TraesCS7D01G341800.1	Wheat	nucleus	65.36	47.78
TraesCS4D01G147900.1	Wheat	nucleus	77.24	47.4
Zm00001d031581_P002	Maize	nucleus	66.25	39.58
Bra040328.1-P	Field mustard	cytosol, mitochondrion	10.49	38.78
Bra007671.1-P	Field mustard	nucleus	25.03	27.58
Bra000445.1-P	Field mustard	cytosol	24.78	27.11
Bra003744.1-P	Field mustard	nucleus	22.63	26.72
Bra038498.1-P	Field mustard	nucleus	28.32	24.86
Bra013313.1-P	Field mustard	nucleus	21.87	24.82
Bra011023.1-P	Field mustard	nucleus	20.1	23.08
Bra010168.1-P	Field mustard	nucleus	30.34	22.99
Bra010915.1-P	Field mustard	nucleus	20.1	22.55
Bra024720.1-P	Field mustard	nucleus	19.6	21.06
Bra023387.1-P	Field mustard	nucleus	31.73	20.11
Bra001237.1-P	Field mustard	cytosol	9.48	17.36
Bra023043.1-P	Field mustard	nucleus	18.2	14.47
Bra001238.1-P	Field mustard	cytosol, mitochondrion	4.8	14.39
Bra009414.1-P	Field mustard	mitochondrion	17.95	12.29
Bra018747.1-P	Field mustard	plastid	18.08	12.12
Bra024903.1-P	Field mustard	nucleus	17.32	12.07
Bra032998.1-P	Field mustard	nucleus	18.46	11.8
Bra021665.1-P	Field mustard	nucleus	15.93	9.66
Bra018293.1-P	Field mustard	plasma membrane, vacuole	15.68	9.39
Bra006057.1-P	Field mustard	plastid	19.6	8.83
Bra009038.1-P	Field mustard	plastid	19.22	8.6
Bra027890.1-P	Field mustard	nucleus	12.77	7.59

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:2.40.50.140	Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra040091	EnsemblPlants:Bra040091.1
EnsemblPlants:Bra040091.1-P	ncoils:Coil	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom
InterPro:IPR003029	UniProt:M4FG64	InterPro:NA-bd_OB-fold	InterPro:P-loop_NTPase	PFAM:PF04408	PFAM:PF07717
PFscan:PS50126	PANTHER:PTHR18934	PANTHER:PTHR18934:SF120	InterPro:S1_dom	InterPro:S1_domain	SMART:SM00316
SMART:SM00847	SUPFAM:SSF50249	SUPFAM:SSF52540	UniParc:UPI0002546958	SEG:seg	:

Description

AT3G26560 (E=5e-178) | ATP-dependent RNA helicase, putative

Coordinates

chrA08:-:13023025..13025400

Molecular Weight (calculated)

90582.3 Da

IEP (calculated)

9.360

GRAVY (calculated)

-0.734

Length

791 amino acids

Sequence
(BLAST)

001: MEKLKHLSLV SNICNELETH VGVVEPKDLA EYIIHLGRNS DTADELDRKL KNDDAELPDY FVRSLLTVIH GIYPPKSEEK GRFNGLAVKV KEIEREAQRE
101: EGRDRGGRSG GDRYRRGRSR DREPELYQVY KGRLNRVMES GCFVQFDRFR GKEGLVHVSQ MGAAESLVKR DMQVYVKVLS GGAKYSLSMK DVDQNTGRVL
201: NKPRRSNPSF RTKDTIRILE EERPSRRRPL KKKMSSPERW EAKQMIASGA LKATDFPEYD EEDGDGMFYQ EEEELEIEMN EEEPAFLQGH SADMSPVKIF
301: RNPQGSLSRA AALQSALTKE KREMRDQQQR TMLDSIPKDL NRPWEDPMPE TGERHLAQEL RGVGLSAYDM PEWKKDAFGN TPTLGQRSKL SIQEQRESLP
401: IYKLKTELIQ AVHDNQVLVV IGETGSGKTT QVTQYLAEAG YTTKGKIGCT QPRRVAATQR AGRAGRTGPG KCYRLYTKSA YCNEMPPTSI PEIQRSNLGT
501: TTLTMKAMGI NDLLSFDFMD PPQPQALISA MEQLYSLGAL DEEGLLTNLG RKMAEFPLEP PLSKMLLASV DLGCSDEILT MIAMIQTDNV FYRPREKQAQ
601: ADQKRAKFFQ PEGDHFTLLA VYEAWKAKNF SGPWCSENFI QSRSLRRAQD VRKQLLSIMD KHKLDVVSAG KNFTKIRKAI TAGFFFHGAR KDPQEGYRTL
701: VENQPVYIHP GSALFQRQPD WVIYHDLVMT TKEYMRQVTV IDPRWLVELA PRFFKVADPT PMSKRKRQER IEPLYDRYHE PNSWRLSKRR G

Best Arabidopsis Sequence Match ( AT1G32490.1 )
(BLAST)

0001: MASNDLKTWV SDKLMMLLGY SQAAVVNYLI AMAKKTKSPT ELVGELVDYG FSSSGDTRSF AEEIFARVPR KTAGVNLYQK HEAEAAMLVR KQKTYALLDA
0101: DDDEDEVVVE KKSSVSESRK SDKGKKRFRK KSGQSDESDG EVAVREDSRH VRRKVSEEDD GSESEEERVR DQKEREELEQ HLKDRDTART RKLTEQTLSK
0201: KEKEEAVRRA NALEKDDLYS LRKVSRQEYL KKREQKKLDE LRDEIEDEQY LFGGEKLTET ELREFRYKKE LYDLVKKRTQ DEDNVEEYRI PDAYDQEGGV
0301: DQEKRFSVAV QRYRDLDSTE KMNPFAEQEA WEDHQIGKAT LKFGAKNKQA SDDYQFVFED QINFIKESVM AGENYEDAMD AKQKSQDLAE KTALEELQEV
0401: RRSLPIYTYR DQLLKAVEEH QVLVIVGDTG SGKTTQIPQY LHEAGYTKRG KVGCTQPRRV AAMSVAARVA QEMGVKLGHE VGYSIRFEDC TSDKTVLKYM
0501: TDGMLLRELL GEPDLASYSV VIVDEAHERT LSTDILFGLV KDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINYTSA PEADYMDAAI
0601: VTILTIHVRE PLGDILVFFT GQEEIETAEE ILKHRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK
0701: MKSYNPRTGM ESLLITPISK ASATQRAGRA GRTSPGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKSLELL
0801: FALGALNKLG ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGGSIFYR PKDKQVHADN ARMNFHTGNV GDHIALLKVY SSWKETNFST
0901: QWCYENYIQV RSMKRARDIR DQLEGLLERV EIDISSNLNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK
1001: EYMRQVTELK PEWLIELAPH YYQLKDVEDA ASKKMPKGAG KAAM

Arabidopsis Description

ESP3ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.