Factsheet for Bra021665.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29644	Canola	nucleus	98.08	97.93
CDX97797	Canola	nucleus	95.02	96.05
AT2G30800.1	Thale cress	nucleus	87.66	88.07
Bra018293.1-P	Field mustard	plasma membrane, vacuole	81.92	80.98
VIT_12s0028g01050.t01	Wine grape	nucleus	55.48	58.81
KRH73592	Soybean	nucleus	52.18	58.61
KRH14525	Soybean	nucleus	51.72	57.99
Solyc07g044930.2.1	Tomato	nucleus	53.18	57.88
EES01523	Sorghum	nucleus	51.26	55.98
TraesCS3A01G298900.1	Wheat	nucleus	50.19	55.74
TraesCS3B01G337600.3	Wheat	nucleus	50.88	55.56
Os01t0767700-01	Rice	nucleus	51.34	54.78
GSMUA_Achr5P02110_001	Banana	mitochondrion	45.9	53.2
TraesCS3D01G302800.2	Wheat	plastid	51.11	52.35
HORVU3Hr1G074660.7	Barley	plastid	49.96	51.18
Zm00001d012661_P002	Maize	mitochondrion, plastid	50.65	50.85
Bra023043.1-P	Field mustard	nucleus	24.6	32.26
Bra003744.1-P	Field mustard	nucleus	15.56	30.3
Bra001238.1-P	Field mustard	cytosol, mitochondrion	6.05	29.92
Bra040328.1-P	Field mustard	cytosol, mitochondrion	4.83	29.44
Bra024903.1-P	Field mustard	nucleus	25.44	29.25
Bra001237.1-P	Field mustard	cytosol	9.66	29.17
Bra000445.1-P	Field mustard	cytosol	16.09	29.05
Bra007671.1-P	Field mustard	nucleus	15.86	28.83
Bra013313.1-P	Field mustard	nucleus	14.94	27.98
Bra010915.1-P	Field mustard	nucleus	15.1	27.94
Bra018747.1-P	Field mustard	plastid	25.21	27.88
Bra011023.1-P	Field mustard	nucleus	14.71	27.87
Bra009414.1-P	Field mustard	mitochondrion	24.06	27.19
Bra024720.1-P	Field mustard	nucleus	14.64	25.95
Bra038498.1-P	Field mustard	nucleus	16.25	23.53
Bra010168.1-P	Field mustard	nucleus	16.17	20.21
Bra025211.1-P	Field mustard	nucleus	16.7	18.62
Bra027890.1-P	Field mustard	nucleus	18.39	18.05
Bra023387.1-P	Field mustard	nucleus	16.78	17.55
Bra040091.1-P	Field mustard	nucleus	9.66	15.93
Bra032998.1-P	Field mustard	nucleus	14.48	15.28
Bra006057.1-P	Field mustard	plastid	16.93	12.59
Bra009038.1-P	Field mustard	plastid	16.55	12.22

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:1.25.40.20	Gene3D:3.30.1370.50	Gene3D:3.40.50.300	MapMan:35.1	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:Bra021665	EnsemblPlants:Bra021665.1	EnsemblPlants:Bra021665.1-P	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001374	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR020683	InterPro:IPR036770	InterPro:IPR036867
UniProt:M4DYR9	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF01424	PFAM:PF04408
PFAM:PF07717	PFscan:PS50297	PFscan:PS51061	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934
PANTHER:PTHR18934:SF100	InterPro:R3H_DEXH_helicase	InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00393	SMART:SM00487
SMART:SM00490	SMART:SM00847	SUPFAM:SSF48403	SUPFAM:SSF52540	SUPFAM:SSF82708	UniParc:UPI00025447E4
SEG:seg	:	:	:	:	:

Description

AT2G30800 (E=0.0) HVT1, ATVT-1 | HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM); ATP binding / helicase/ nucleic acid binding

Coordinates

chrA04:-:13723758..13729337

Molecular Weight (calculated)

145275.0 Da

IEP (calculated)

7.273

GRAVY (calculated)

-0.505

Length

1305 amino acids

Sequence
(BLAST)

0001: MGNKRFRSEN AAGKPSSVEA TRIWASKVIE DFRASGNEVY TFEHNLSNTE RGVIHQMCRK MGIQSKSSGQ GNQRRLSIFK DMYRNGKNKG AKEKSNKEKL
0101: RCVSFPPEAD AILQELFTYY PPCDGDTAAT SFNKYVGKSG KQGQWKDDFF RKPQMSGDEI LDKVASLSSR LRNDRALQEI SKLRSRLPIT SFRDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGDNIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: GSYVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSANLSIP
0401: DQKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSQGSP EIYNYQHQST LLTPLMVFAG KGRISDVCML LSFGADWNLK SKDGMTALEL AETENQLEAA
0501: QIIREHAESS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGGAILVFLP GWDDINKTRQ RLLDSPIFSD GSKFNIICLH SMVPAGEQKK
0601: VFSRPPRGCR KIVLATNIAE SAVTIDDVVY VIDSGRMKEK SYDPYSNVST LQSSWVSKAN AKQREGRAGR CQPGICYHLY SRLRAASMPD FKVPEIKRMP
0701: VEELCLQVKI LDPNCKTNDF LQKLLDPPVD QSIANALSIL QDIGALTPEE ELTELGEKFG HLPVHPLISK MLFFAVLVNC LDPALTLACA ADYKEPFTMP
0801: MSPVERQKAA TAKLELASLC GGDSDHLAVV AAFDCWKNAK ERGLAAEFCS QYFVSPSAMK MLDQMRSQLE SELKRHGIIP NDISSCSQNS RDPGILRAVL
0901: AVGLYPMVGR LCPSFGNNRR SLVETASGAK VRVHSLSNNF NLSSKKYDES LVVFDEITRG DGGMHIRNCT VARDLPLLLV STEIAVAPTE RSDADDSDGE
1001: EEEEEDEETG EEEDEEEGMN IHKAESRREE NMMSSPENSV KLVVDRWLPF KTTALEVAQM YILRERLTAS ILFKVRHPRE NLPPHLGASM YAIARILSYD
1101: GHAGLSSPSE SMRPKHSRTE MYETGGWEEK PNSFLNSLFW SLSLKESKPS YSGHVNRNRQ HGFNTVPTEV ASMHTQQNIK QRNPKSAING DPGKKKEKMY
1201: VNHTNGIHQP EAASIAKQSK HRSGNGSGSG NKKENMPSDQ VYGNQQPNSA PREGASPVAN HQISKKTKNR PANISDFGKK KTQYVPKIDL HKKEREDKVE
1301: QRGNA

Best Arabidopsis Sequence Match ( AT2G30800.1 )
(BLAST)

0001: MGNKRFRSDN NAGKPTSVEA TRIWATKVIE DFRASGNEVY TFEHNLSNNE RGVIHQMCRK MGIQSKSSGR GEQRRLSIFK SRHKNGNKNE ANEKSNKEKL
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK

Arabidopsis Description

HVT1DExH-box ATP-dependent RNA helicase DExH6 [Source:UniProtKB/Swiss-Prot;Acc:F4INY4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.