Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES01523 | Sorghum | nucleus | 81.85 | 83.77 |
| TraesCS3B01G337600.3 | Wheat | nucleus | 79.48 | 81.34 |
| TraesCS3A01G298900.1 | Wheat | nucleus | 77.35 | 80.51 |
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 81.19 | 76.38 |
| TraesCS3D01G302800.2 | Wheat | plastid | 79.39 | 76.22 |
| HORVU3Hr1G074660.7 | Barley | plastid | 77.51 | 74.41 |
| GSMUA_Achr5P02110_001 | Banana | mitochondrion | 62.14 | 67.5 |
| Solyc07g044930.2.1 | Tomato | nucleus | 59.61 | 60.8 |
| VIT_12s0028g01050.t01 | Wine grape | nucleus | 60.83 | 60.44 |
| KRH73592 | Soybean | nucleus | 55.44 | 58.35 |
| KRH14525 | Soybean | nucleus | 55.03 | 57.82 |
| CDY10756 | Canola | nucleus | 49.55 | 55.65 |
| Bra021665.1-P | Field mustard | nucleus | 54.78 | 51.34 |
| AT2G30800.1 | Thale cress | nucleus | 54.46 | 51.27 |
| CDX97797 | Canola | nucleus | 53.72 | 50.89 |
| CDY29644 | Canola | nucleus | 54.21 | 50.73 |
| Bra018293.1-P | Field mustard | plasma membrane, vacuole | 53.23 | 49.32 |
| CDY10215 | Canola | nucleus | 49.3 | 46.96 |
| AT1G06670.1 | Thale cress | nucleus | 50.29 | 39.02 |
| Os01t0118100-01 | Rice | cytosol, mitochondrion, nucleus | 22.65 | 33.86 |
| Os10t0471350-01 | Rice | nucleus | 26.9 | 32.97 |
| Os03t0314100-01 | Rice | cytosol, nucleus, plastid | 14.8 | 32.09 |
| Os08t0335000-00 | Rice | cytosol, nucleus | 9.32 | 31.06 |
| Os02t0301500-01 | Rice | nucleus | 12.76 | 28.57 |
| Os01t0212100-01 | Rice | nucleus | 16.27 | 28.43 |
| Os11t0310800-01 | Rice | nucleus | 16.19 | 27.97 |
| Os03t0748800-01 | Rice | mitochondrion | 25.43 | 27.04 |
| Os06t0192500-02 | Rice | mitochondrion | 8.91 | 26.72 |
| Os06t0343100-01 | Rice | nucleus | 18.56 | 20.94 |
| Os04t0432200-00 | Rice | extracellular | 1.23 | 20.55 |
| Os05t0389800-01 | Rice | nucleus | 17.33 | 19.81 |
| Os07t0508000-01 | Rice | nucleus | 18.15 | 17.34 |
| Os02t0736600-01 | Rice | nucleus | 16.11 | 15.49 |
| Os07t0621500-01 | Rice | cytosol, nucleus | 10.79 | 10.26 |
| Os02t0736800-01 | Rice | mitochondrion | 0.08 | 1.04 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:1.25.40.20 | Gene3D:3.30.1370.50 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:Ankyrin_rpt |
| InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | ProteinID:BAD53327.1 | ProteinID:BAD53353.1 | ProteinID:BAF06276.1 | ProteinID:BAS74522.1 |
| ProteinID:BAS74524.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001374 |
| InterPro:IPR001650 | InterPro:IPR002110 | InterPro:IPR014001 | InterPro:IPR020683 | InterPro:IPR036770 | InterPro:IPR036867 |
| EnsemblPlantsGene:Os01g0767700 | EnsemblPlants:Os01t0767700-01 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF01424 |
| PFAM:PF04408 | PFAM:PF07717 | PFscan:PS50088 | PFscan:PS50297 | PFscan:PS51061 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF100 | UniProt:Q5ZAP0 | InterPro:R3H_DEXH_helicase | InterPro:R3H_dom |
| InterPro:R3H_dom_sf | SMART:SM00393 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF48403 |
| SUPFAM:SSF52540 | SUPFAM:SSF82708 | UniParc:UPI0000446CFD | SEG:seg | : | : |
Description
RNA helicase ASimilar to DEIH-box RNA/DNA helicase. (Os01t0767700-01);Similar to predicted protein. (Os01t0767700-02);Similar to predicted protein. (Os01t0767700-03)
Coordinates
chr1:+:32350513..32360564
Molecular Weight (calculated)
134674.0 Da
IEP (calculated)
7.600
GRAVY (calculated)
-0.357
Length
1223 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVRRGRKGKD AAAGAGGTGG RGGGAGRGGG RGGSGGGGGG GGVREATLVR VSKVLEDFQA SDAQVYKFEP GISKQERAAI HEMCRKMGMI SKSSGNGERR
0101: CLSVYKRKQN QGLETEEGPS HLGFSVEARN VLQDLFMHYP PDDAELNGHT VRNSSDKAVK IQWKPDGAFC RPALRKPDIL KKVEMLASKV NKSEQLRKIV
0201: QDRSKLPISS YKDAISSTLE NHQVVLISGE TGCGKTTQVP QYILDHMWGK GESCKIVCTQ PRRISAISVA ERISAERGES VGDTVGYKIR LESKGGKNSS
0301: IMFCTNGVLL RLLIGRVTNI SKEQNQKRSF DDAVTGITHI IVDEIHERDR FSDFMLAILR DLLPLYPHLR LVLMSATIDA ERFSNYFSGC PFIQVPGFTH
0401: PVKTFYLEDV LSILQSVGDN HLDPTTDDLK QSSLLTDDYK SSMDEAINLA LDNDEFDPLL ELISAEQNQE IFNYQHSETG VTPLMVLAGK GQVGDICMLL
0501: SFGVDCSTRD HDGKSALGWA EQGNQQEVCE VIKKHMECGS AKLTEENELL NKYLATINPE HIDTVLIERL LRKICVDSNE GAILVFLPGW EDINQTRERL
0601: LASPFFQDSS KFLVLSLHSM IPSSEQKKVF KRPPAGSRKI ILSTNIAETA VTIDDVVFVI DSGRMKEKSY DPYNNVSTLH SSWVSKANAR QRQGRAGRCQ
0701: PGTCYHLYSR FRAASLLEYQ IPEIKRMPIE ELCLQVKLLD PNCRIADFLR KTLDPPIPET VRNAITVLQD LGALTQDEQL TELGEKLGSL PVHPSTSKML
0801: LFGILMNCLD PALTLACAAD YRDPFLLPMA PDERKRAAAA KVELASLYGG YSDQLAVVAA MDCWRRAKDR GQEAQFCSKY FVSSNTMNML SNMRKQLQNE
0901: LAQRGFVPVD ASACSLNARD PGIIRAVLMA GAYPMVGRLL PPRKNTRRAV IETASGAKVR LHPHSCNFNL SFRKTSGNPL VIYDEITRGD GGMYIKNSSV
1001: VGSYPLIILA TEMVVAPPED DDSDEEDGDS SEDETEKVTL GQHKEIMSSP DNSVSVVIDR WLRFDATALD VAQIYCLRER LASAILFKVK HPQDVLPPDL
1101: GATMYAIACI LSYDGLPAMI TSDDVATSQG SNQSSAESSR FSQGRRVGYI PPGGFLMSLL SDKPLNAPHF QKSFNHPDGA SGHIRSSRTS VGRFDQSRHP
1201: QRNNSGPGSS AARTFKRQRN GAQ
0101: CLSVYKRKQN QGLETEEGPS HLGFSVEARN VLQDLFMHYP PDDAELNGHT VRNSSDKAVK IQWKPDGAFC RPALRKPDIL KKVEMLASKV NKSEQLRKIV
0201: QDRSKLPISS YKDAISSTLE NHQVVLISGE TGCGKTTQVP QYILDHMWGK GESCKIVCTQ PRRISAISVA ERISAERGES VGDTVGYKIR LESKGGKNSS
0301: IMFCTNGVLL RLLIGRVTNI SKEQNQKRSF DDAVTGITHI IVDEIHERDR FSDFMLAILR DLLPLYPHLR LVLMSATIDA ERFSNYFSGC PFIQVPGFTH
0401: PVKTFYLEDV LSILQSVGDN HLDPTTDDLK QSSLLTDDYK SSMDEAINLA LDNDEFDPLL ELISAEQNQE IFNYQHSETG VTPLMVLAGK GQVGDICMLL
0501: SFGVDCSTRD HDGKSALGWA EQGNQQEVCE VIKKHMECGS AKLTEENELL NKYLATINPE HIDTVLIERL LRKICVDSNE GAILVFLPGW EDINQTRERL
0601: LASPFFQDSS KFLVLSLHSM IPSSEQKKVF KRPPAGSRKI ILSTNIAETA VTIDDVVFVI DSGRMKEKSY DPYNNVSTLH SSWVSKANAR QRQGRAGRCQ
0701: PGTCYHLYSR FRAASLLEYQ IPEIKRMPIE ELCLQVKLLD PNCRIADFLR KTLDPPIPET VRNAITVLQD LGALTQDEQL TELGEKLGSL PVHPSTSKML
0801: LFGILMNCLD PALTLACAAD YRDPFLLPMA PDERKRAAAA KVELASLYGG YSDQLAVVAA MDCWRRAKDR GQEAQFCSKY FVSSNTMNML SNMRKQLQNE
0901: LAQRGFVPVD ASACSLNARD PGIIRAVLMA GAYPMVGRLL PPRKNTRRAV IETASGAKVR LHPHSCNFNL SFRKTSGNPL VIYDEITRGD GGMYIKNSSV
1001: VGSYPLIILA TEMVVAPPED DDSDEEDGDS SEDETEKVTL GQHKEIMSSP DNSVSVVIDR WLRFDATALD VAQIYCLRER LASAILFKVK HPQDVLPPDL
1101: GATMYAIACI LSYDGLPAMI TSDDVATSQG SNQSSAESSR FSQGRRVGYI PPGGFLMSLL SDKPLNAPHF QKSFNHPDGA SGHIRSSRTS VGRFDQSRHP
1201: QRNNSGPGSS AARTFKRQRN GAQ
0001: MGNKRFRSDN NAGKPTSVEA TRIWATKVIE DFRASGNEVY TFEHNLSNNE RGVIHQMCRK MGIQSKSSGR GEQRRLSIFK SRHKNGNKNE ANEKSNKEKL
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK
Arabidopsis Description
HVT1DExH-box ATP-dependent RNA helicase DExH6 [Source:UniProtKB/Swiss-Prot;Acc:F4INY4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.