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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 2
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os08t0335000-00 Rice cytosol, nucleus 26.17 76.29
HORVU1Hr1G056370.1 Barley nucleus 73.74 74.22
HORVU1Hr1G056400.1 Barley nucleus 73.74 74.08
TraesCS1B01G254900.1 Wheat nucleus 72.99 73.68
TraesCS1A01G243400.1 Wheat nucleus 72.9 73.58
TraesCS1D01G243400.1 Wheat nucleus 72.8 73.42
OQU77934 Sorghum nucleus 71.96 72.23
Os02t0301500-01 Rice nucleus 26.54 52.01
Os03t0314100-01 Rice cytosol, nucleus, plastid 26.64 50.53
Os06t0192500-02 Rice mitochondrion 18.04 47.3
Os01t0212100-01 Rice nucleus 29.35 44.86
Os11t0310800-01 Rice nucleus 25.14 37.99
Os06t0343100-01 Rice nucleus 38.22 37.73
Os07t0508000-01 Rice nucleus 36.73 30.7
Os10t0471350-01 Rice nucleus 22.9 24.55
Os01t0118100-01 Rice cytosol, mitochondrion, nucleus 15.89 20.78
Os03t0748800-01 Rice mitochondrion 22.06 20.52
Os02t0736600-01 Rice nucleus 24.11 20.28
Os01t0767700-01 Rice nucleus 19.81 17.33
Os07t0621500-01 Rice cytosol, nucleus 13.46 11.19
Os04t0432200-00 Rice extracellular 0.37 5.48
Os02t0736800-01 Rice mitochondrion 0.09 1.04
Protein Annotations
Gene3D:1.20.120.1080MapMan:16.4.7.1.5Gene3D:3.40.50.300EntrezGene:4338675ProteinID:AAT47443.1ProteinID:BAF17351.1
ProteinID:BAS93837.1ncoils:CoilInterPro:DEAD/DEAH_box_helicase_domInterPro:DNA/RNA_helicase_DEAH_CSInterPro:DUF1605GO:GO:0000166
GO:GO:0000398GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003824GO:GO:0004004
GO:GO:0004386GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005681GO:GO:0005737GO:GO:0006139GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016787InterPro:Helicase-assoc_domInterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650
InterPro:IPR014001EnsemblPlantsGene:Os05g0389800EnsemblPlants:Os05t0389800-01InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271
PFAM:PF04408PFAM:PF07717ScanProsite:PS00690PFscan:PS51192PFscan:PS51194PANTHER:PTHR18934
PANTHER:PTHR18934:SF117UniProt:Q6I5X9SMART:SM00487SMART:SM00490SMART:SM00847SUPFAM:SSF52540
UniParc:UPI00003B0D48RefSeq:XP_015637331.1SEG:seg:::
Description
Similar to ATP-dependent helicase DHX8 (RNA helicase HRH1) (DEAH-box protein 8). (Os05t0389800-01)
Coordinates
chr5:-:18872363..18875789
Molecular Weight (calculated)
118685.0 Da
IEP (calculated)
5.427
GRAVY (calculated)
-0.494
Length
1070 amino acids
Sequence
(BLAST)
0001: MAASDDGQLR TWVSDRLMAL LGYSQGLVAR LVVRLARECA SAGDLAARLV DLAGFPPSPD TAAFAEDVYG RVPRSCGGGG DDAGVSEYQR QMQEAAAMAK
0101: KQSTIKLLDD DGEIGVSASP SSGGRKRFRR KAVGEDDDDA GRNARRRRSP DDEEEDGDAG EEEEMERDQI ERAQLERNIR ERDAASTRRL TDRKTTKREQ
0201: GELARRSDAM DKNDTSGLRR LSRRAYLQRR KEKKVEEMRD EIVDHEFLFP GVQLTAAEER DMRHKKQVYG LVHDRDDYYR MPDAYDAAAN VDQEKRFSVA
0301: RRRYEEPAEA ARDGKTANAL SEQEAWEEQQ IRKSRLQFGS MDRGRRGDEY ELLFDDGVEF VRSTVMAGTA PADDDDTAAA AAADEYHAEA MDAKATLQDE
0401: RKTLPVYKLK DDLLKAIDEH KVLIVVGETG SGKTTQIPQY LHEVGYTAGG RKKVACTQPR RVAAMSVAAR VAEEMGVKLG HEVGYSIRFE DCTSEKTVIK
0501: YMTDGMLLRE FLGEPDLGSY SVVVVDEAHE RTLATDILFG LVKDIARLRP DMKLLISSAT LNADKFSDFF DAAPVFRIPG RRFEVGIHYT VAPEADYIDA
0601: AVVTVLQLHV TEPPGGGDIL LFLTGQEEIE TVEEILRHRL RVLGGKVAEL VICPIYANLP AELQAKIFEP APAGARKVVL ATNIAETSLT IDGIKYVVDP
0701: GFCKVKSYNP RTGMESLLVA PVSRASAEQR AGRSGRTGPG ECFRLYTEYN FVSDLDDDAV PEIQRSNLAS VVLALKALGI NDLVGFDFMD PPPAESLLRA
0801: LEELFALGAL NSRGELTKTG RRMAEFPLDP MLSKAIVASE RYGCSEEVIT IAAMLSAGNA VFYRPRDKRV HADAARRAFH AGNAGDHVAL LNVYNAWAES
0901: GYSPQWCRES FVQHRTMRRA RDVRDQLGAL LERVEIAPCS SAGGGDLDAV RKAVTAGYFR HAARLQRDGS YRAVKSRQTV FVHPSSGVAQ APPRWALYHE
1001: LVLTTKEYMR QVTELKPEWL VEIAPHYYER KDVDEPEPKK TAAATTPQEQ TTAGSTPTKQ TPNLNSFFDV
Best Arabidopsis Sequence Match ( AT1G32490.1 )
(BLAST)
0001: MASNDLKTWV SDKLMMLLGY SQAAVVNYLI AMAKKTKSPT ELVGELVDYG FSSSGDTRSF AEEIFARVPR KTAGVNLYQK HEAEAAMLVR KQKTYALLDA
0101: DDDEDEVVVE KKSSVSESRK SDKGKKRFRK KSGQSDESDG EVAVREDSRH VRRKVSEEDD GSESEEERVR DQKEREELEQ HLKDRDTART RKLTEQTLSK
0201: KEKEEAVRRA NALEKDDLYS LRKVSRQEYL KKREQKKLDE LRDEIEDEQY LFGGEKLTET ELREFRYKKE LYDLVKKRTQ DEDNVEEYRI PDAYDQEGGV
0301: DQEKRFSVAV QRYRDLDSTE KMNPFAEQEA WEDHQIGKAT LKFGAKNKQA SDDYQFVFED QINFIKESVM AGENYEDAMD AKQKSQDLAE KTALEELQEV
0401: RRSLPIYTYR DQLLKAVEEH QVLVIVGDTG SGKTTQIPQY LHEAGYTKRG KVGCTQPRRV AAMSVAARVA QEMGVKLGHE VGYSIRFEDC TSDKTVLKYM
0501: TDGMLLRELL GEPDLASYSV VIVDEAHERT LSTDILFGLV KDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINYTSA PEADYMDAAI
0601: VTILTIHVRE PLGDILVFFT GQEEIETAEE ILKHRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK
0701: MKSYNPRTGM ESLLITPISK ASATQRAGRA GRTSPGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKSLELL
0801: FALGALNKLG ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGGSIFYR PKDKQVHADN ARMNFHTGNV GDHIALLKVY SSWKETNFST
0901: QWCYENYIQV RSMKRARDIR DQLEGLLERV EIDISSNLNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK
1001: EYMRQVTELK PEWLIELAPH YYQLKDVEDA ASKKMPKGAG KAAM
Arabidopsis Description
ESP3ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.