Factsheet for TraesCS1D01G243400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G254900.1	Wheat	nucleus	95.66	95.75
TraesCS1A01G243400.1	Wheat	nucleus	94.82	94.91
HORVU1Hr1G056370.1	Barley	nucleus	92.37	92.19
HORVU1Hr1G056400.1	Barley	nucleus	92.37	92.02
Os05t0389800-01	Rice	nucleus	73.42	72.8
OQU77934	Sorghum	nucleus	72.01	71.67
TraesCS4D01G362600.1	Wheat	nucleus	66.54	67.5
TraesCS4D01G181700.1	Wheat	cytosol	32.33	47.57
TraesCS3D01G148100.1	Wheat	nucleus	29.88	45.22
TraesCS7D01G157100.1	Wheat	plastid	30.25	45.02
TraesCS4D01G074200.1	Wheat	nucleus	25.26	38.01
TraesCS7D01G341800.1	Wheat	nucleus	37.89	37.15
TraesCS3D01G264900.1	Wheat	plastid	32.23	37.13
TraesCS4D01G147900.1	Wheat	nucleus	39.87	32.82
TraesCS2D01G231900.1	Wheat	nucleus	35.25	26.66
TraesCS1D01G148100.2	Wheat	nucleus	23.94	24.68
TraesCS5D01G397600.1	Wheat	nucleus	22.34	20.61
TraesCS6D01G279300.1	Wheat	nucleus	23.85	19.08
TraesCS3D01G025600.1	Wheat	mitochondrion, nucleus, plastid	22.15	18.92
TraesCS3D01G112900.1	Wheat	nucleus	22.9	18.18
TraesCS2D01G302700.1	Wheat	plastid	23.37	17.35
TraesCS3D01G302800.2	Wheat	plastid	20.08	16.72
TraesCS5D01G087800.2	Wheat	nucleus	22.71	14.39
TraesCS2D01G171200.2	Wheat	nucleus	22.53	13.69

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.1.5	Gene3D:3.40.50.300	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS
InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF117
SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS1D01G243400	EnsemblPlants:TraesCS1D01G243400.1
TIGR:cd00046	TIGR:cd00079	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1D:-:333500645..333503830

Molecular Weight (calculated)

118856.0 Da

IEP (calculated)

5.993

GRAVY (calculated)

-0.538

Length

1061 amino acids

Sequence
(BLAST)

0001: MSSEEGQLKT RVSDRLMALV GYSEVMVVRL VLRLARESAS AADLAARLVD LAGLPSSADT VAFAEDVHAM FPRQGSRVSE YRKQVQEAAA FAKRQSAFKL
0101: LDDEDDVAED AGATAIDTAS SSNTNSNKRF RQKAASQGDD DGEEEATVMR DSGRKVRARR APAKDGGNSC GEELEEMDRD QIEKAQLDQH IRERDAASTR
0201: KLTDRKPSKR EQGELARRSE AMDRGDTSEL RTASRQAYLE KRKKMKVEEM RDEIVDNELI FDGVKMTNAE EREFRRKKEI YDLVKDRVGK DADAGEYYRM
0301: PEAYDAAENV DQAKRFAVPR QRYDDPEAAA RDGKRSNFFS EQEAWEEQQI RKSRLHFGSG DGVPAGGGYE LVLEDMVDFV KSTVQAGAEP DGEMDELAEA
0401: VDAKVTLQRE LQNERKNLPV YKFKDDLLKA IEKYQVLIIV GETGSGKTTQ IPQYLHEAGY TAKGKKIACT QPRRVAAMSV AARVAQELGV KLGHEVGYSI
0501: RFEDCTSDKT MIKYMTDGML LREFLGEPDL ASYSMVIVDE AHERTLSTDI LFGLVKDIAR FRPDVKLLIS SATLNAERFS DFFDEAPIFK IPGRRYKVDI
0601: HYTTAPEADY IAAAVVTVLQ LHVKQPAGDI LLFLTGQEEI ETVEELLKQK MMTVGSKIAE LVICPIYANL PTELQGKIFE PTPEGARKVV LATNIAETSL
0701: TIDGIKYVID PGFCKLKSYN PRTGMESLRV EPISKASADQ RAGRSGRTGP GKCFRLFTEY NFRHDLDDDT VPEIQRSNLA NVVLRLKALG INDLVGFDFM
0801: DPPASEALLK ALEELFALGA LNSRGELTKT GRRMAEFPLD PMLSKAIVAS EKYGCSEEVV TIAAMLSAGN AFFYRPKDKL VLADTARQAF HAGNVGDHVA
0901: LLNVYNAWRE SGYSSQWCRE NFVQPRTMKR ARDVRDQLEA LLERLEIEHC SGAGDLDGIR KAVTAGYFRN AARRQKDGSY RAVKSRQTVF VHPSSGTAEL
1001: PPTWVVYHEL VLTRKEYMRQ VTELKPEWLL EIAPHYYQRK DIDGHEPKKK AKDKGPATRQ T

Best Arabidopsis Sequence Match ( AT1G32490.1 )
(BLAST)

0001: MASNDLKTWV SDKLMMLLGY SQAAVVNYLI AMAKKTKSPT ELVGELVDYG FSSSGDTRSF AEEIFARVPR KTAGVNLYQK HEAEAAMLVR KQKTYALLDA
0101: DDDEDEVVVE KKSSVSESRK SDKGKKRFRK KSGQSDESDG EVAVREDSRH VRRKVSEEDD GSESEEERVR DQKEREELEQ HLKDRDTART RKLTEQTLSK
0201: KEKEEAVRRA NALEKDDLYS LRKVSRQEYL KKREQKKLDE LRDEIEDEQY LFGGEKLTET ELREFRYKKE LYDLVKKRTQ DEDNVEEYRI PDAYDQEGGV
0301: DQEKRFSVAV QRYRDLDSTE KMNPFAEQEA WEDHQIGKAT LKFGAKNKQA SDDYQFVFED QINFIKESVM AGENYEDAMD AKQKSQDLAE KTALEELQEV
0401: RRSLPIYTYR DQLLKAVEEH QVLVIVGDTG SGKTTQIPQY LHEAGYTKRG KVGCTQPRRV AAMSVAARVA QEMGVKLGHE VGYSIRFEDC TSDKTVLKYM
0501: TDGMLLRELL GEPDLASYSV VIVDEAHERT LSTDILFGLV KDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINYTSA PEADYMDAAI
0601: VTILTIHVRE PLGDILVFFT GQEEIETAEE ILKHRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK
0701: MKSYNPRTGM ESLLITPISK ASATQRAGRA GRTSPGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKSLELL
0801: FALGALNKLG ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGGSIFYR PKDKQVHADN ARMNFHTGNV GDHIALLKVY SSWKETNFST
0901: QWCYENYIQV RSMKRARDIR DQLEGLLERV EIDISSNLNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK
1001: EYMRQVTELK PEWLIELAPH YYQLKDVEDA ASKKMPKGAG KAAM

Arabidopsis Description

ESP3ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.