Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0010g02920.t01 | Wine grape | nucleus | 76.76 | 80.8 |
| Solyc12g089010.1.1 | Tomato | nucleus | 64.06 | 72.84 |
| CDY23802 | Canola | nucleus | 39.31 | 68.95 |
| PGSC0003DMT400039875 | Potato | nucleus | 66.99 | 66.85 |
| Os07t0508000-01 | Rice | nucleus | 84.26 | 60.62 |
| KXG36287 | Sorghum | nucleus | 84.47 | 60.54 |
| Zm00001d006459_P003 | Maize | plastid | 83.82 | 57.36 |
| Bra023387.1-P | Field mustard | nucleus | 76.55 | 56.49 |
| CDX91151 | Canola | nucleus | 76.55 | 56.45 |
| CDX85676 | Canola | nucleus | 76.44 | 56.41 |
| KRH23170 | Soybean | nucleus | 77.52 | 56.18 |
| PGSC0003DMT400018531 | Potato | nucleus | 78.28 | 56.11 |
| Solyc10g076910.1.1 | Tomato | nucleus | 78.18 | 56.03 |
| KRH10165 | Soybean | nucleus | 76.87 | 55.66 |
| AT5G13010.1 | Thale cress | nucleus | 75.68 | 55.54 |
| TraesCS2D01G231900.1 | Wheat | nucleus | 84.47 | 55.45 |
| TraesCS4D01G181700.1 | Wheat | cytosol | 32.46 | 41.47 |
| TraesCS7D01G157100.1 | Wheat | plastid | 31.7 | 40.95 |
| TraesCS3D01G148100.1 | Wheat | nucleus | 30.94 | 40.66 |
| TraesCS4D01G074200.1 | Wheat | nucleus | 30.73 | 40.14 |
| TraesCS7D01G341800.1 | Wheat | nucleus | 40.28 | 34.29 |
| TraesCS4D01G362600.1 | Wheat | nucleus | 37.68 | 33.17 |
| TraesCS1D01G243400.1 | Wheat | nucleus | 37.13 | 32.23 |
| TraesCS4D01G147900.1 | Wheat | nucleus | 41.8 | 29.87 |
| TraesCS1D01G148100.2 | Wheat | nucleus | 25.52 | 22.84 |
| TraesCS5D01G397600.1 | Wheat | nucleus | 25.41 | 20.35 |
| TraesCS6D01G279300.1 | Wheat | nucleus | 27.8 | 19.31 |
| TraesCS3D01G025600.1 | Wheat | mitochondrion, nucleus, plastid | 24.32 | 18.04 |
| TraesCS3D01G112900.1 | Wheat | nucleus | 25.19 | 17.35 |
| TraesCS3D01G302800.2 | Wheat | plastid | 23.34 | 16.88 |
| TraesCS2D01G302700.1 | Wheat | plastid | 24.54 | 15.82 |
| TraesCS5D01G087800.2 | Wheat | nucleus | 25.52 | 14.03 |
| TraesCS2D01G171200.2 | Wheat | nucleus | 25.84 | 13.63 |
Protein Annotations
| Gene3D:1.20.120.1080 | MapMan:16.4.7.1.6 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF91 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM00847 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS3D01G264900 | EnsemblPlants:TraesCS3D01G264900.1 | TIGR:cd00046 | TIGR:cd00079 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:366799266..366802031
Molecular Weight (calculated)
104098.0 Da
IEP (calculated)
7.806
GRAVY (calculated)
-0.301
Length
921 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTAHGMAVK NRAVYSMPVV ILEMMLPFRI RRQNCSKKLT RQDGSLMTLA QSKRLSQVTA ENARWEDRQL FRSGAVRRTE VQTEFDDEDE RKVILLVHDT
101: KPPFLDGRVV FTTQAEPVMP LKDPTSDMVI IARKGSLLVR EIREKQSMNK SRQRFWELAG SMLGHILGVG KTTQQADADT VLVGDQGDVD FKEKLKFSQH
201: LKEKAEAVSD FAKSKSLSEQ RQYLPIYTVR DDLLGVVREN QVVVVVGETG SGKTTQLTQY LHEDGYTRTG LVGCTQPRRV AAMSVARRVS DEMETVLGEE
301: VGYAIRFEDV TCHKTKIKYM TDGVLLRETL KDADLDKYRV IIMDEAHERS VDTDVLFGIL KKVAARRRDF KLIVTSATLN ADKFSKFFGG APVFHIPGRT
401: FPVNILYSKT PCEDYVEAAV KQAITIHITS GPGDILIFMT GQEEIETACY ALAERMEQLI SSSTKAAGKL SILPVYSQLP ADLQAKIFQK AGEGTRKCIV
501: ATNIAETSLT VDGILYVIDT GYGKMKVYNP RMGMDALQVF PCSRAAADQR AGRAGRTGPG TCYRLFTESA YQDEMLPNPV PEIQRTNLAN VVLLLKSLEV
601: ENLLHFDFMD PPPQENILNS MYQLWLLGAL NNAGGLANLG WKMVEFPLDP TLAKMLLMGK ELGCVDEVLT IVSMLSVPSV FFRPKDREEE SDTAREKFFV
701: PESDHLTLLN VYLLWESNEY SVDWCNAHFL HVKGLQKARE VRSQLVDILN TLKIPQISRH REWDLVRKAI CSAYFQNSAR LKGVGEYVNC RNGVPCHLHP
801: SSALYGLGYT PDYIVYHELV LTTKDYMQCV SAVDPQWLVE LGPMFFSVKE GDTSFLDRRR WHNEEKTAME EEMEKLRQEQ DEAACRVKGR EEKRGKPQQQ
901: VAMPGLKKGL AYLRPRRRMG L
101: KPPFLDGRVV FTTQAEPVMP LKDPTSDMVI IARKGSLLVR EIREKQSMNK SRQRFWELAG SMLGHILGVG KTTQQADADT VLVGDQGDVD FKEKLKFSQH
201: LKEKAEAVSD FAKSKSLSEQ RQYLPIYTVR DDLLGVVREN QVVVVVGETG SGKTTQLTQY LHEDGYTRTG LVGCTQPRRV AAMSVARRVS DEMETVLGEE
301: VGYAIRFEDV TCHKTKIKYM TDGVLLRETL KDADLDKYRV IIMDEAHERS VDTDVLFGIL KKVAARRRDF KLIVTSATLN ADKFSKFFGG APVFHIPGRT
401: FPVNILYSKT PCEDYVEAAV KQAITIHITS GPGDILIFMT GQEEIETACY ALAERMEQLI SSSTKAAGKL SILPVYSQLP ADLQAKIFQK AGEGTRKCIV
501: ATNIAETSLT VDGILYVIDT GYGKMKVYNP RMGMDALQVF PCSRAAADQR AGRAGRTGPG TCYRLFTESA YQDEMLPNPV PEIQRTNLAN VVLLLKSLEV
601: ENLLHFDFMD PPPQENILNS MYQLWLLGAL NNAGGLANLG WKMVEFPLDP TLAKMLLMGK ELGCVDEVLT IVSMLSVPSV FFRPKDREEE SDTAREKFFV
701: PESDHLTLLN VYLLWESNEY SVDWCNAHFL HVKGLQKARE VRSQLVDILN TLKIPQISRH REWDLVRKAI CSAYFQNSAR LKGVGEYVNC RNGVPCHLHP
801: SSALYGLGYT PDYIVYHELV LTTKDYMQCV SAVDPQWLVE LGPMFFSVKE GDTSFLDRRR WHNEEKTAME EEMEKLRQEQ DEAACRVKGR EEKRGKPQQQ
901: VAMPGLKKGL AYLRPRRRMG L
0001: MGVDPFKTTE TLEADKETNG GVPVKDKLTF KAPERKSRLG LDARAIEKKD NAKTEGEFKV PKKSAISVTS SLDEEDKSDV SGLDFGTENT RPVHSSRRYR
0101: EKSSRSQSAQ ESTVTTENAG TSDISITPRT LSCTSSYERG GSNRHREEHR RDRSETPRSR QRNTYDEMDH YRRRESYRQS DRDYHGEKRR RYNSDWRTPG
0201: RSDWDDGQDE WERSPHGDRG SSYSRRPQPS PSPMLAAASP DARLASPWLD TPRSTMSSAS PWDMGAPSPI PIRASGSSIR SSSSRYGGRS NQLAYSREGD
0301: LTNEGHSDED RSQGAEEFKH EITETMRVEM EYQSDRAWYD TDEGNSLFDA DSASFFLGDD ASLQKKETEL AKRLVRRDGS KMSLAQSKKY SQLNADNAQW
0401: EDRQLLRSGA VRGTEVQTEF DSEEERKAIL LVHDTKPPFL DGRVVYTKQA EPVMPVKDPT SDMAIISRKG SGLVKEIREK QSANKSRQRF WELAGSNLGN
0501: ILGIEKSAEQ IDADTAVVGD DGEVDFKGEA KFAQHMKKGE AVSEFAMSKT MAEQRQYLPI FSVRDELLQV IRENQVIVVV GETGSGKTTQ LTQYLHEDGY
0601: TINGIVGCTQ PRRVAAMSVA KRVSEEMETE LGDKIGYAIR FEDVTGPNTV IKYMTDGVLL RETLKDSDLD KYRVVVMDEA HERSLNTDVL FGILKKVVAR
0701: RRDFKLIVTS ATLNAQKFSN FFGSVPIFNI PGRTFPVNIL YSKTPCEDYV EAAVKQAMTI HITSPPGDIL IFMTGQDEIE AACFSLKERM EQLVSSSSRE
0801: ITNLLILPIY SQLPADLQAK IFQKPEDGAR KCIVATNIAE TSLTVDGIYY VIDTGYGKMK VFNPRMGMDA LQVFPISRAA SDQRAGRAGR TGPGTCYRLY
0901: TESAYLNEML PSPVPEIQRT NLGNVVLLLK SLKIDNLLDF DFMDPPPQEN ILNSMYQLWV LGALNNVGGL TDLGWKMVEF PLDPPLAKML LMGERLDCID
1001: EVLTIVSMLS VPSVFFRPKE RAEESDAARE KFFVPESDHL TLLNVYQQWK EHDYRGDWCN DHYLQVKGLR KAREVRSQLL DILKQLKIEL RSCGPDWDIV
1101: RKAICSAYFH NSARLKGVGE YVNCRTGMPC HLHPSSALYG LGYTPDYVVY HELILTTKEY MQCATSVEPH WLAELGPMFF SVKDSDTSML EHKKKQKEEK
1201: SGMEEEMEKL RRDQVESELR SKERERKKRA KQQQQISGPG LKKGTTFLRP KKLGL
0101: EKSSRSQSAQ ESTVTTENAG TSDISITPRT LSCTSSYERG GSNRHREEHR RDRSETPRSR QRNTYDEMDH YRRRESYRQS DRDYHGEKRR RYNSDWRTPG
0201: RSDWDDGQDE WERSPHGDRG SSYSRRPQPS PSPMLAAASP DARLASPWLD TPRSTMSSAS PWDMGAPSPI PIRASGSSIR SSSSRYGGRS NQLAYSREGD
0301: LTNEGHSDED RSQGAEEFKH EITETMRVEM EYQSDRAWYD TDEGNSLFDA DSASFFLGDD ASLQKKETEL AKRLVRRDGS KMSLAQSKKY SQLNADNAQW
0401: EDRQLLRSGA VRGTEVQTEF DSEEERKAIL LVHDTKPPFL DGRVVYTKQA EPVMPVKDPT SDMAIISRKG SGLVKEIREK QSANKSRQRF WELAGSNLGN
0501: ILGIEKSAEQ IDADTAVVGD DGEVDFKGEA KFAQHMKKGE AVSEFAMSKT MAEQRQYLPI FSVRDELLQV IRENQVIVVV GETGSGKTTQ LTQYLHEDGY
0601: TINGIVGCTQ PRRVAAMSVA KRVSEEMETE LGDKIGYAIR FEDVTGPNTV IKYMTDGVLL RETLKDSDLD KYRVVVMDEA HERSLNTDVL FGILKKVVAR
0701: RRDFKLIVTS ATLNAQKFSN FFGSVPIFNI PGRTFPVNIL YSKTPCEDYV EAAVKQAMTI HITSPPGDIL IFMTGQDEIE AACFSLKERM EQLVSSSSRE
0801: ITNLLILPIY SQLPADLQAK IFQKPEDGAR KCIVATNIAE TSLTVDGIYY VIDTGYGKMK VFNPRMGMDA LQVFPISRAA SDQRAGRAGR TGPGTCYRLY
0901: TESAYLNEML PSPVPEIQRT NLGNVVLLLK SLKIDNLLDF DFMDPPPQEN ILNSMYQLWV LGALNNVGGL TDLGWKMVEF PLDPPLAKML LMGERLDCID
1001: EVLTIVSMLS VPSVFFRPKE RAEESDAARE KFFVPESDHL TLLNVYQQWK EHDYRGDWCN DHYLQVKGLR KAREVRSQLL DILKQLKIEL RSCGPDWDIV
1101: RKAICSAYFH NSARLKGVGE YVNCRTGMPC HLHPSSALYG LGYTPDYVVY HELILTTKEY MQCATSVEPH WLAELGPMFF SVKDSDTSML EHKKKQKEEK
1201: SGMEEEMEKL RRDQVESELR SKERERKKRA KQQQQISGPG LKKGTTFLRP KKLGL
Arabidopsis Description
CUVPre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Source:UniProtKB/Swiss-Prot;Acc:F4K2E9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.