Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G129700.1 | Wheat | nucleus | 96.78 | 79.58 |
| TraesCS3A01G111000.1 | Wheat | nucleus | 96.71 | 73.72 |
| TraesCS2D01G171200.2 | Wheat | nucleus | 83.62 | 64.03 |
| TraesCS5D01G087800.2 | Wheat | nucleus | 77.56 | 61.91 |
| OQU90279 | Sorghum | nucleus | 62.98 | 55.5 |
| Os07t0621500-01 | Rice | cytosol, nucleus | 52.95 | 55.01 |
| Zm00001d022176_P002 | Maize | nucleus | 71.58 | 54.62 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 38.52 | 41.8 |
| PGSC0003DMT400041805 | Potato | nucleus | 46.37 | 38.22 |
| KRG97543 | Soybean | nucleus, plastid | 48.77 | 37.71 |
| KRH31333 | Soybean | nucleus, plastid | 48.39 | 37.27 |
| Solyc04g014210.2.1 | Tomato | nucleus | 48.09 | 37.17 |
| Solyc11g010310.1.1 | Tomato | nucleus | 47.12 | 36.95 |
| PGSC0003DMT400060759 | Potato | nucleus | 47.64 | 36.84 |
| AT5G10370.1 | Thale cress | nucleus | 46.37 | 34.93 |
| AT4G01020.1 | Thale cress | nucleus | 46.3 | 34.64 |
| Bra006057.1-P | Field mustard | plastid | 45.4 | 34.59 |
| CDX78376 | Canola | plastid | 45.33 | 34.49 |
| CDX81170 | Canola | plastid | 45.4 | 34.43 |
| VIT_07s0191g00210.t01 | Wine grape | nucleus | 43.98 | 33.85 |
| CDX96996 | Canola | nucleus | 44.13 | 33.35 |
| CDX69841 | Canola | plastid | 43.98 | 33.28 |
| Bra009038.1-P | Field mustard | plastid | 43.98 | 33.28 |
| TraesCS3D01G148100.1 | Wheat | nucleus | 16.01 | 30.53 |
| TraesCS4D01G181700.1 | Wheat | cytosol | 16.01 | 29.68 |
| TraesCS7D01G157100.1 | Wheat | plastid | 15.71 | 29.45 |
| TraesCS4D01G074200.1 | Wheat | nucleus | 15.41 | 29.22 |
| TraesCS3D01G264900.1 | Wheat | plastid | 17.35 | 25.19 |
| TraesCS4D01G362600.1 | Wheat | nucleus | 18.1 | 23.14 |
| TraesCS1D01G243400.1 | Wheat | nucleus | 18.18 | 22.9 |
| TraesCS7D01G341800.1 | Wheat | nucleus | 18.18 | 22.46 |
| TraesCS1D01G148100.2 | Wheat | nucleus | 16.16 | 20.99 |
| TraesCS5D01G397600.1 | Wheat | nucleus | 16.53 | 19.22 |
| TraesCS4D01G147900.1 | Wheat | nucleus | 18.03 | 18.7 |
| TraesCS2D01G231900.1 | Wheat | nucleus | 18.47 | 17.61 |
| TraesCS3D01G025600.1 | Wheat | mitochondrion, nucleus, plastid | 15.63 | 16.83 |
| TraesCS6D01G279300.1 | Wheat | nucleus | 16.01 | 16.14 |
| TraesCS3D01G302800.2 | Wheat | plastid | 14.58 | 15.31 |
| TraesCS2D01G302700.1 | Wheat | plastid | 16.23 | 15.19 |
Protein Annotations
| Gene3D:1.10.10.2130 | MapMan:19.2.2.1.5.4.3 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 | ScanProsite:PS00690 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF81 | InterPro:RBD_domain_sf | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS3D01G112900 | EnsemblPlants:TraesCS3D01G112900.1 |
| TIGR:cd00046 | TIGR:cd00079 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3D:-:67022105..67029876
Molecular Weight (calculated)
149258.0 Da
IEP (calculated)
7.186
GRAVY (calculated)
-0.154
Length
1337 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRPSQDRRPF RPPDRVSPPP HLHRQQRLRQ PPPHARQFAV ILLLAGPTFS SPPATEVDAL VAGLQSPPPD GLSVCSSGRH AARLLFRSLP AAAAAARELW
0101: SLRLDGLHLL TPHLPDAALA SHAFPLVASL FASHASRLLD SGLISRSAAR SAELAVSIQS VKRRLRGHNN FRDFDQFNLQ KKTLEAEKEL VDARIAEYKA
0201: AMSLITRAML RGTDDGEEVE EEGVDVFGIG EGEDVDFVRL HMMMLRECRT LNEGLPIYAY RRKILNHIFN NQVMILIGET GSGKSTQLVQ FLADSGLSGN
0301: DSIVCTQPRK IAALSLAHRV DEESKGCYAD NFMSSYSSFL NGQNFSSKII FCTDSCLLHH CMNDADLNGI SYIIVDEAHE RSLNTDLLLA LIKKKLLDRL
0401: DLRLIIMSAT ADANRLAEYF YGCQTFHVKG RNFPVEIKYV PDVSVDASFN IVASSLRGPC AAASYVNDVI RQVSIIHKNE EEGAILAFLT SQLEVEWACE
0501: NFTDASAVVL PIYGKLSPVE QSRVFKSYSG MRKIIFCTNI AETSLTIKEV KYVVDSGLVK DSRFVPSSGL NVLKVNWISQ SSANQRAGRA GRTGVGKCYR
0601: LYSEADFSMM ELHQEPEIQK VHLGTAVLRI LALGVKDAQN FEFVDAPNPE AINMAVKNLE QLGAVNCNCN CYELTDTGRH LVKLGIEPRL GKIMLDCFGF
0701: GLRKEGVVLA AVMANSSSIF CRVGTDEEKH KADLQKVRLC HQDGDLFTLL AVYKKWEDGH ENRNMWCWQN SINAKTMRRC QETISELENC LKHELKIIIP
0801: SYWCWNPEAP SEHDKLLKRI ILSSLAGNLA MFLGHERFGY QVISTDQIVN LHPSCSLLNY CTKPDWVVFS EILSVPNQYL VCVTAVDHDA LYAIHPMSSI
0901: QQLEIHKLQI KVISGLGNNL LGKFVGKSGQ NQQKIISRLK EDCKDDRLTV EVNFNNNEVV LFATAQHMEK VFCIVNNALE CEGKLMRNEC LERSLFPERS
1001: GSSPIALFGS GAEVKHLELG KRYLTVEVLH QNASDINDKE LISLVDSLVS GIANFHKSSG NFRLGSDETK WGKITFLKPE NAEDAVSKLN GVEFHGSSLR
1101: IVPVCSPDNQ GLRFPSVRAK LCWPRKESRG LALVTCASGE AQSVVDDCFA LGIDGRYISC RVSTKEENCV FVERIPLHVS ERELYDAFRS TTTRRILNIR
1201: LLRVKEATIA SPSVSVCEEV LIREISPFMP NKSFPGKSFR VEVFPPEEND SMMRATLTFD GNLHREAARA LDHLEGSILP CCQPWQIIQC KHVFHSTMSC
1301: SVRVYNVISQ EVTSLLESFR SQKGVSYNYE KTENGIF
0101: SLRLDGLHLL TPHLPDAALA SHAFPLVASL FASHASRLLD SGLISRSAAR SAELAVSIQS VKRRLRGHNN FRDFDQFNLQ KKTLEAEKEL VDARIAEYKA
0201: AMSLITRAML RGTDDGEEVE EEGVDVFGIG EGEDVDFVRL HMMMLRECRT LNEGLPIYAY RRKILNHIFN NQVMILIGET GSGKSTQLVQ FLADSGLSGN
0301: DSIVCTQPRK IAALSLAHRV DEESKGCYAD NFMSSYSSFL NGQNFSSKII FCTDSCLLHH CMNDADLNGI SYIIVDEAHE RSLNTDLLLA LIKKKLLDRL
0401: DLRLIIMSAT ADANRLAEYF YGCQTFHVKG RNFPVEIKYV PDVSVDASFN IVASSLRGPC AAASYVNDVI RQVSIIHKNE EEGAILAFLT SQLEVEWACE
0501: NFTDASAVVL PIYGKLSPVE QSRVFKSYSG MRKIIFCTNI AETSLTIKEV KYVVDSGLVK DSRFVPSSGL NVLKVNWISQ SSANQRAGRA GRTGVGKCYR
0601: LYSEADFSMM ELHQEPEIQK VHLGTAVLRI LALGVKDAQN FEFVDAPNPE AINMAVKNLE QLGAVNCNCN CYELTDTGRH LVKLGIEPRL GKIMLDCFGF
0701: GLRKEGVVLA AVMANSSSIF CRVGTDEEKH KADLQKVRLC HQDGDLFTLL AVYKKWEDGH ENRNMWCWQN SINAKTMRRC QETISELENC LKHELKIIIP
0801: SYWCWNPEAP SEHDKLLKRI ILSSLAGNLA MFLGHERFGY QVISTDQIVN LHPSCSLLNY CTKPDWVVFS EILSVPNQYL VCVTAVDHDA LYAIHPMSSI
0901: QQLEIHKLQI KVISGLGNNL LGKFVGKSGQ NQQKIISRLK EDCKDDRLTV EVNFNNNEVV LFATAQHMEK VFCIVNNALE CEGKLMRNEC LERSLFPERS
1001: GSSPIALFGS GAEVKHLELG KRYLTVEVLH QNASDINDKE LISLVDSLVS GIANFHKSSG NFRLGSDETK WGKITFLKPE NAEDAVSKLN GVEFHGSSLR
1101: IVPVCSPDNQ GLRFPSVRAK LCWPRKESRG LALVTCASGE AQSVVDDCFA LGIDGRYISC RVSTKEENCV FVERIPLHVS ERELYDAFRS TTTRRILNIR
1201: LLRVKEATIA SPSVSVCEEV LIREISPFMP NKSFPGKSFR VEVFPPEEND SMMRATLTFD GNLHREAARA LDHLEGSILP CCQPWQIIQC KHVFHSTMSC
1301: SVRVYNVISQ EVTSLLESFR SQKGVSYNYE KTENGIF
001: MQVVIVREDK RNVRRKVSED EDDGTESEEE RLRDQREREE LEQHLRERDT ARTRKLTEPK MSKKEQEEFV RRDSAVDKGD IESLRKFSWQ EYMKKRKQKK
101: VLELKDDIED EPYLFGDEKL TEREIREFRY KREIYELIKK STQEEDNVGE YRMPDAYDQQ GSVDQEKRFA VSVQRYRDMG SAEKMNPFAE QEAWEDHQIE
201: NAALKFGAKN KEVSDNYEFV FEDQIDFIKA SVLAGDNYED EMHAKPSQDS AGKSAFHMLQ EDRKALPIYT YRDQLLNAVK DHQVLIIVGE TGSGKTTQIP
301: QYLHEAGYTK LGKVGCTQPR RVAAMSVAAR VAQEMGGKLG HEVGYSIRFE DCTSEKTILK YMTDGMLLRE LLGEPDLGSY SVIIVDEAHE RTLRTDILFG
401: LVKDIARARP DLKLLISSAT MDAEKFSDFF DQAPIFRFPG RRYPVDICFT TAPEADYMDA AITTVLTIHV KEPLGDVLVF LPGQEEIEAV EENLKHKIRG
501: LGTKIRELII CPIYANLPSE LQAKIFEPTP EGARKVVLAT NIAETSLTID GIKYVVDPGF SKMKSYNPRT GMESLLVTPI SKASATQRTG RAGRTSPGKC
601: YRLYTAFNYY NDLEDNTVPE IQRTNLASVV LSLKSLGIHN LLNFDFMDPP PSEALIKSLE LLFALGALNQ LGELTKAGRR MAEFPLDPML SKMIVVSDKY
701: KCSDEIISIA AMLSIGPSIF YRPKDKQVHA DNAMKNFHVG NVGDHIAFLK IYNSWKETNY STQWCYENYI QVRSMKRARD IRDQLEGLLE RVEIDVSSNA
801: NELDSIRKSI VAGFFPHTAK LQKNGSYRTV KHPQTVHIHP ASGLSQVLPR WVVYHQLVLT SKEYMRQVTE LKPEWLIEIA PHYYQLKDVE DATSKKMPKT
901: SGRAVV
101: VLELKDDIED EPYLFGDEKL TEREIREFRY KREIYELIKK STQEEDNVGE YRMPDAYDQQ GSVDQEKRFA VSVQRYRDMG SAEKMNPFAE QEAWEDHQIE
201: NAALKFGAKN KEVSDNYEFV FEDQIDFIKA SVLAGDNYED EMHAKPSQDS AGKSAFHMLQ EDRKALPIYT YRDQLLNAVK DHQVLIIVGE TGSGKTTQIP
301: QYLHEAGYTK LGKVGCTQPR RVAAMSVAAR VAQEMGGKLG HEVGYSIRFE DCTSEKTILK YMTDGMLLRE LLGEPDLGSY SVIIVDEAHE RTLRTDILFG
401: LVKDIARARP DLKLLISSAT MDAEKFSDFF DQAPIFRFPG RRYPVDICFT TAPEADYMDA AITTVLTIHV KEPLGDVLVF LPGQEEIEAV EENLKHKIRG
501: LGTKIRELII CPIYANLPSE LQAKIFEPTP EGARKVVLAT NIAETSLTID GIKYVVDPGF SKMKSYNPRT GMESLLVTPI SKASATQRTG RAGRTSPGKC
601: YRLYTAFNYY NDLEDNTVPE IQRTNLASVV LSLKSLGIHN LLNFDFMDPP PSEALIKSLE LLFALGALNQ LGELTKAGRR MAEFPLDPML SKMIVVSDKY
701: KCSDEIISIA AMLSIGPSIF YRPKDKQVHA DNAMKNFHVG NVGDHIAFLK IYNSWKETNY STQWCYENYI QVRSMKRARD IRDQLEGLLE RVEIDVSSNA
801: NELDSIRKSI VAGFFPHTAK LQKNGSYRTV KHPQTVHIHP ASGLSQVLPR WVVYHQLVLT SKEYMRQVTE LKPEWLIEIA PHYYQLKDVE DATSKKMPKT
901: SGRAVV
Arabidopsis Description
MEE29Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 [Source:UniProtKB/Swiss-Prot;Acc:F4IJV4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.