Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G112900.1 | Wheat | nucleus | 73.72 | 96.71 |
| TraesCS3B01G129700.1 | Wheat | nucleus | 89.05 | 96.06 |
| TraesCS5A01G074100.1 | Wheat | nucleus | 79.3 | 82.8 |
| TraesCS2A01G164100.1 | Wheat | nucleus | 81.58 | 79.02 |
| Os07t0621500-01 | Rice | cytosol, nucleus | 56.39 | 76.85 |
| OQU90279 | Sorghum | nucleus | 63.57 | 73.5 |
| Zm00001d022176_P002 | Maize | nucleus | 69.78 | 69.86 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 42.02 | 59.82 |
| PGSC0003DMT400041805 | Potato | nucleus | 46.35 | 50.12 |
| KRG97543 | Soybean | nucleus, plastid | 48.75 | 49.45 |
| KRH31333 | Soybean | nucleus, plastid | 48.35 | 48.85 |
| Solyc04g014210.2.1 | Tomato | nucleus | 47.78 | 48.44 |
| Solyc11g010310.1.1 | Tomato | nucleus | 46.81 | 48.15 |
| PGSC0003DMT400060759 | Potato | nucleus | 47.43 | 48.12 |
| AT5G10370.1 | Thale cress | nucleus | 45.67 | 45.13 |
| AT4G01020.1 | Thale cress | nucleus | 45.67 | 44.82 |
| Bra006057.1-P | Field mustard | plastid | 44.75 | 44.73 |
| CDX81170 | Canola | plastid | 44.93 | 44.7 |
| CDX78376 | Canola | plastid | 44.7 | 44.62 |
| CDX96996 | Canola | nucleus | 44.07 | 43.7 |
| VIT_07s0191g00210.t01 | Wine grape | nucleus | 43.27 | 43.7 |
| Bra009038.1-P | Field mustard | plastid | 43.96 | 43.63 |
| CDX69841 | Canola | plastid | 43.84 | 43.52 |
| TraesCS3A01G131800.1 | Wheat | nucleus | 12.09 | 30.24 |
| TraesCS4A01G239500.2 | Wheat | nucleus | 12.14 | 30.21 |
| TraesCS4A01G124200.2 | Wheat | cytosol | 12.31 | 30.04 |
| TraesCS7A01G156700.1 | Wheat | plastid | 11.74 | 28.89 |
| TraesCS1A01G243400.1 | Wheat | nucleus | 13.57 | 22.45 |
| TraesCS5A01G387700.2 | Wheat | golgi, nucleus | 14.31 | 21.73 |
| TraesCS1A01G151100.1 | Wheat | nucleus | 12.66 | 21.57 |
| TraesCS2A01G233700.1 | Wheat | nucleus | 14.37 | 19.95 |
| TraesCS4A01G158200.1 | Wheat | nucleus | 13.74 | 19.53 |
| TraesCS3A01G021300.1 | Wheat | extracellular | 13.63 | 19.21 |
| TraesCS3A01G298900.1 | Wheat | nucleus | 11.63 | 17.36 |
| TraesCS6A01G178200.1 | Wheat | nucleus | 12.03 | 17.17 |
| TraesCS6A01G299400.2 | Wheat | nucleus | 12.71 | 16.82 |
| TraesCS2A01G304100.1 | Wheat | nucleus, plastid | 12.66 | 15.54 |
Protein Annotations
| Gene3D:1.10.10.2130 | Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.3 | Gene3D:3.30.40.10 | Gene3D:3.40.50.300 | ncoils:Coil |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IBR_dom | InterPro:IPR001650 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR014001 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF01485 | PFAM:PF04408 | ScanProsite:PS00518 |
| ScanProsite:PS00690 | PFscan:PS50089 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF81 |
| InterPro:RBD_domain_sf | SMART:SM00184 | SMART:SM00487 | SMART:SM00490 | SMART:SM00647 | SMART:SM00847 |
| SUPFAM:SSF52540 | SUPFAM:SSF54928 | SUPFAM:SSF57850 | EnsemblPlantsGene:TraesCS3A01G111000 | EnsemblPlants:TraesCS3A01G111000.1 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | TIGR:cd00046 | TIGR:cd00079 | SEG:seg | : |
Description
No Description!
Coordinates
chr3A:-:77939002..77949063
Molecular Weight (calculated)
196106.0 Da
IEP (calculated)
7.119
GRAVY (calculated)
-0.206
Length
1754 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRPSQDRRPF RPPDRVSPPP HLHRQQRPRQ PPPHARQFAV ILLRAGPSSS SPPATEVDAL VAGLQSPPPD SLSACSSGRQ AAQLLFRSLP TAAAAARELW
0101: SLRLDGLHLL TPHLPDAALA SHAYPLVASL FASHASRLLD SGLVSRSAAR SAELAVSIQS VKRRLRGHNN FRDFDQFNLQ KRTLEAEKEL IDAKIAEYKA
0201: AMSSIRRAML HGTDDEEEVD EEEGVDVFGI GEGEDVDFVR LHMMMLRECR RLNEGLPIYA YRRKILNHIF NNQVMILIGE TGSGKSTQLV QFLADSGLSG
0301: NDSIVCTQPR KIAALSLAHR VDEESKGCYA DNFVSSCSSF WNDQNFSSKI IFCTDSCLLY HCMNDADLNG ISYIIVDEAH ERSLNTDLLL ALIKKKLLDR
0401: LDLRLIIMSA TADANRLAEY FYGCQTFHVK GRNFPVEIKY VPDVSVDASF NIVPNSLRGP CAAASYVNDV IRQVSIIHKN EEEGAILAFL TSQLEVEWAC
0501: ENFTDASAVV LPMHGKLSPV EQSRVFKSYS GMRKIIFCTN IAETSLTIKE VKYVVDSGLV KDSRFVPSSG LNVLKVNWIS QSSANQRAGQ AGRTGVGKCY
0601: RLYSEADFSM MELHQEPEIQ KVHLGTAVLR ILALGVKDAQ NFEFVDAPNP EVINMAVKNL EQLGAVKCNC NCYELTDTGR HLVKLGIEPR LGKIMLDCFG
0701: FGLRKEGVVL AAVMANSSSI FCRVGTDEEK HKADLQKVRL CHQDGDLFTL LAVYKKWEDG HENRNMWCWQ NSINAKTMRR CQETISELEN CLKHELKIII
0801: PSYWCWNPEA PSEHDKLLKR IILSSLAGNL AMFLGHERFG YQVISTDQIV NLHPSCSLLN YGTKPDWVVF SEILSVPNQY LVCVTAVDHD ALYAIHPMSS
0901: VQQLEKHKLQ IKVISGLGNN LLAKFVGKSG QNQQKIISHL KEDCKDDRVT VEVNFNNNEV VLFATAQHME KVFCIVNNAM ECEGKLMRNE CLERSLFPER
1001: SGSSPIALFG SGAEVKHLEL GKRYLTVEVL HQNASDINDK ELISLVDSLV SGIANFHKSS GNFRLGSDET KWGKITFLKP ENAEDAVSKL NGVEFHGSSL
1101: KIVPVCSPDN QGLRFPSVRA KLCWPRKESR GLALVTCASG EAQSVVDDCF ALGIDGSCRV SMKEENCVFV ERIPLHVSER ELYDAFRSAT TRRILNIRLL
1201: RVKEATIASP SVSVCEEVLI REISPFMPNK SFPGKSFRVE VFPPEENDSM MRATLTFDGN LHREAARALD HLEGSILPCC QPWQIIQCKH VFHSTMSCSV
1301: RVYNVISQEV TSLLESFRSQ KGVSYNYEKT ENGIFRVKLT ANATKTIADL RRPLEILMKG KTIDHPDLTL SAVQMLLSRD GVAHLKSIEQ ETEMKVGLLQ
1401: ARPKTRPGPM FAQVCVQHHM AEAEAKLVHA LPQLLEKRPL EICLRGHNLP PDLMKKTVEN FGVDLEGFKT VMPSVKVELH KHRHILKVWG SREDKRRVEG
1501: MISELITSVK HNVPVHLPSE NVGGSKDDNQ RVADNELSMD ACAICLCETE DPFKLESCGH IFCRACLVDQ CEVATKSYDG FPVCCLKTGC KKPFLIVDLK
1601: HLVSNEKLED LFSASLRAFV ASRAGIYRFC PTPDCRSIYQ VAAPDAETKP FVCGACYVEI CTKCHLEYHP FISCEAYKEY KEDPDATLLE WRKGKENVKN
1701: CPSCGYTIEK AEGCNHVECR CGCHICWACL ANFKSSEECY GHLRSAHQSF VDIV
0101: SLRLDGLHLL TPHLPDAALA SHAYPLVASL FASHASRLLD SGLVSRSAAR SAELAVSIQS VKRRLRGHNN FRDFDQFNLQ KRTLEAEKEL IDAKIAEYKA
0201: AMSSIRRAML HGTDDEEEVD EEEGVDVFGI GEGEDVDFVR LHMMMLRECR RLNEGLPIYA YRRKILNHIF NNQVMILIGE TGSGKSTQLV QFLADSGLSG
0301: NDSIVCTQPR KIAALSLAHR VDEESKGCYA DNFVSSCSSF WNDQNFSSKI IFCTDSCLLY HCMNDADLNG ISYIIVDEAH ERSLNTDLLL ALIKKKLLDR
0401: LDLRLIIMSA TADANRLAEY FYGCQTFHVK GRNFPVEIKY VPDVSVDASF NIVPNSLRGP CAAASYVNDV IRQVSIIHKN EEEGAILAFL TSQLEVEWAC
0501: ENFTDASAVV LPMHGKLSPV EQSRVFKSYS GMRKIIFCTN IAETSLTIKE VKYVVDSGLV KDSRFVPSSG LNVLKVNWIS QSSANQRAGQ AGRTGVGKCY
0601: RLYSEADFSM MELHQEPEIQ KVHLGTAVLR ILALGVKDAQ NFEFVDAPNP EVINMAVKNL EQLGAVKCNC NCYELTDTGR HLVKLGIEPR LGKIMLDCFG
0701: FGLRKEGVVL AAVMANSSSI FCRVGTDEEK HKADLQKVRL CHQDGDLFTL LAVYKKWEDG HENRNMWCWQ NSINAKTMRR CQETISELEN CLKHELKIII
0801: PSYWCWNPEA PSEHDKLLKR IILSSLAGNL AMFLGHERFG YQVISTDQIV NLHPSCSLLN YGTKPDWVVF SEILSVPNQY LVCVTAVDHD ALYAIHPMSS
0901: VQQLEKHKLQ IKVISGLGNN LLAKFVGKSG QNQQKIISHL KEDCKDDRVT VEVNFNNNEV VLFATAQHME KVFCIVNNAM ECEGKLMRNE CLERSLFPER
1001: SGSSPIALFG SGAEVKHLEL GKRYLTVEVL HQNASDINDK ELISLVDSLV SGIANFHKSS GNFRLGSDET KWGKITFLKP ENAEDAVSKL NGVEFHGSSL
1101: KIVPVCSPDN QGLRFPSVRA KLCWPRKESR GLALVTCASG EAQSVVDDCF ALGIDGSCRV SMKEENCVFV ERIPLHVSER ELYDAFRSAT TRRILNIRLL
1201: RVKEATIASP SVSVCEEVLI REISPFMPNK SFPGKSFRVE VFPPEENDSM MRATLTFDGN LHREAARALD HLEGSILPCC QPWQIIQCKH VFHSTMSCSV
1301: RVYNVISQEV TSLLESFRSQ KGVSYNYEKT ENGIFRVKLT ANATKTIADL RRPLEILMKG KTIDHPDLTL SAVQMLLSRD GVAHLKSIEQ ETEMKVGLLQ
1401: ARPKTRPGPM FAQVCVQHHM AEAEAKLVHA LPQLLEKRPL EICLRGHNLP PDLMKKTVEN FGVDLEGFKT VMPSVKVELH KHRHILKVWG SREDKRRVEG
1501: MISELITSVK HNVPVHLPSE NVGGSKDDNQ RVADNELSMD ACAICLCETE DPFKLESCGH IFCRACLVDQ CEVATKSYDG FPVCCLKTGC KKPFLIVDLK
1601: HLVSNEKLED LFSASLRAFV ASRAGIYRFC PTPDCRSIYQ VAAPDAETKP FVCGACYVEI CTKCHLEYHP FISCEAYKEY KEDPDATLLE WRKGKENVKN
1701: CPSCGYTIEK AEGCNHVECR CGCHICWACL ANFKSSEECY GHLRSAHQSF VDIV
0001: MRNSFPPSDG GRSATDRRQQ SSHSSSTNRY NSRSAQSSPP LNHRPTWNQQ HSQYPNSNFP PNYRRDRNPS SGYSPPVTRA RPNFIVQLLH PAAANSDTKL
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
Arabidopsis Description
ATP-dependent RNA helicase DEAH12, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4KGU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.