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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • mitochondrion 2
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra006057.1-P Field mustard plastid 98.75 98.86
CDX81170 Canola plastid 97.55 97.22
CDX96996 Canola nucleus 83.27 82.7
CDX69841 Canola plastid 82.24 81.78
AT5G10370.1 Thale cress nucleus 80.99 80.17
AT4G01020.1 Thale cress nucleus 80.02 78.68
KRG97543 Soybean nucleus, plastid 55.26 56.16
KRH31333 Soybean nucleus, plastid 54.3 54.95
PGSC0003DMT400041805 Potato nucleus 50.65 54.87
GSMUA_Achr8P17640_001 Banana nucleus 37.68 53.73
Solyc11g010310.1.1 Tomato nucleus 51.34 52.9
Solyc04g014210.2.1 Tomato nucleus 52.02 52.83
PGSC0003DMT400060759 Potato nucleus 51.74 52.57
VIT_07s0191g00210.t01 Wine grape nucleus 49.17 49.74
OQU90279 Sorghum nucleus 42.29 48.98
TraesCS5B01G080500.1 Wheat nucleus 36.54 48.53
Os07t0621500-01 Rice cytosol, nucleus 35.34 48.25
TraesCS5A01G074100.1 Wheat nucleus 44.39 46.43
TraesCS5D01G087800.2 Wheat nucleus 44.17 46.33
TraesCS2D01G171200.2 Wheat nucleus 45.99 46.28
TraesCS2B01G190100.1 Wheat nucleus 45.53 46.14
Zm00001d022176_P002 Maize nucleus 45.59 45.72
TraesCS3D01G112900.1 Wheat nucleus 34.49 45.33
TraesCS3B01G129700.1 Wheat nucleus 41.55 44.9
HORVU5Hr1G019730.1 Barley nucleus, plastid 43.6 44.85
TraesCS3A01G111000.1 Wheat nucleus 44.62 44.7
TraesCS2A01G164100.1 Wheat nucleus 45.82 44.45
HORVU2Hr1G030040.17 Barley nucleus 45.19 43.51
CDX74059 Canola nucleus 5.12 34.09
CDY34567 Canola nucleus 12.41 32.88
CDY36075 Canola nucleus 12.58 32.79
CDY68405 Canola nucleus 12.46 32.69
CDY23338 Canola cytosol 7.8 32.46
CDX74061 Canola cytosol 5.92 32.4
CDY11762 Canola nucleus 12.64 31.53
CDX90112 Canola nucleus 12.64 31.49
CDX99466 Canola nucleus 12.52 31.43
CDX85017 Canola cytosol, plastid 12.86 31.3
CDX78859 Canola nucleus 12.41 31.23
CDY16154 Canola nucleus, plastid 12.81 31.12
CDY11413 Canola nucleus 12.69 31.06
CDY37024 Canola cytosol, mitochondrion 5.69 30.86
CDX76626 Canola nucleus 12.58 30.78
CDY32702 Canola nucleus 12.07 30.64
CDX83337 Canola cytosol 12.41 30.15
CDY02818 Canola nucleus 11.38 30.12
CDX95715 Canola cytosol 12.41 30.07
CDY60185 Canola nucleus 13.66 27.94
CDY40514 Canola nucleus 13.66 27.87
CDY26898 Canola nucleus 14.23 23.95
CDY32278 Canola endoplasmic reticulum 14.23 23.95
CDX83624 Canola nucleus 14.74 23.23
CDY13640 Canola nucleus 14.74 23.02
CDY17694 Canola nucleus 14.68 22.73
CDY57512 Canola nucleus 14.68 22.73
CDY23802 Canola nucleus 6.72 22.48
CDX98799 Canola mitochondrion 14.4 21.92
CDX70187 Canola mitochondrion 14.34 21.8
CDX93688 Canola plastid 14.57 21.69
CDY40601 Canola nucleus, plastid 14.57 21.68
CDX79642 Canola nucleus, vacuole 12.69 21.55
CDX84588 Canola plastid, vacuole 12.64 21.45
CDX85676 Canola nucleus 14.0 19.71
CDX91151 Canola nucleus 14.0 19.7
CDY10756 Canola nucleus 11.61 18.73
CDY48353 Canola nucleus 12.81 18.4
CDY34159 Canola nucleus 12.86 18.27
CDX91491 Canola nucleus 0.63 17.46
CDY51663 Canola nucleus 0.63 17.46
CDX97797 Canola nucleus 12.35 16.81
CDY39917 Canola nucleus 13.49 16.77
CDY29164 Canola nucleus 13.55 16.71
CDY29644 Canola nucleus 12.41 16.68
CDY10215 Canola nucleus 12.12 16.59
CDY63687 Canola nucleus, plastid 9.9 15.68
Protein Annotations
Gene3D:1.10.10.2130Gene3D:1.20.120.1750MapMan:19.2.2.1.5.4.3Gene3D:3.30.40.10Gene3D:3.40.50.300GO:A0A078CMF6
EnsemblPlants:CDX78376ProteinID:CDX78376ProteinID:CDX78376.1ncoils:CoilInterPro:DEAD/DEAH_box_helicase_domInterPro:DNA/RNA_helicase_DEAH_CS
InterPro:DUF1605GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003824GO:GO:0004386
GO:GO:0005488GO:GO:0005524GO:GO:0016787GO:GO:0046872EnsemblPlantsGene:GSBRNA2T00129748001InterPro:Helicase-assoc_dom
InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IBR_domInterPro:IPR001650InterPro:IPR013083InterPro:IPR013087
InterPro:IPR014001InterPro:P-loop_NTPasePFAM:PF00097PFAM:PF00270PFAM:PF00271PFAM:PF01485
PFAM:PF04408PFAM:PF07717ScanProsite:PS00028ScanProsite:PS00518ScanProsite:PS00690PFscan:PS51192
PFscan:PS51194PANTHER:PTHR18934PANTHER:PTHR18934:SF81SMART:SM00487SMART:SM00490SMART:SM00647
SMART:SM00847SUPFAM:SSF52540SUPFAM:SSF57850UniParc:UPI0004EE0679InterPro:Znf_C2H2_typeInterPro:Znf_C3HC4_RING-type
InterPro:Znf_RING/FYVE/PHDInterPro:Znf_RING_CSSEG:seg:::
Description
BnaA03g02880D
Coordinates
chrLK031815:+:496834..502560
Molecular Weight (calculated)
197523.0 Da
IEP (calculated)
7.029
GRAVY (calculated)
-0.224
Length
1757 amino acids
Sequence
(BLAST)
0001: MKSSLPPAYR GRSATNRHPS LPSASSSTNC SNFRSPPLNH RQYPSSSFPP NYRRDRPPAT PNFIVQLVHP RTPAAEPSPS FSVRKQVIST LASLCGIPEE
0101: SIHVPQFGCI AGSFSFRQWV DALSAVVALW EYRLQGKTLL VPELVANVTV PSDVEELRDR LRGLFSGHVL SIMDNGDCVK KVRAEIEEKS RQVESFSSKR
0201: GIKIEAFERK KAIEAERDLV VKRLEEFKNG MKSIVRFLEG RDGEKDDVAV FSLEGDYDWP RIHSLIRREC RRLEDGLPIY AYRRNILKRI HGEQVMVLIG
0301: ETGSGKSTQL VQFLADSGVA ATESIVCTQP RKIAALTLAD RVREESNGCY EENSVRCTPA FSSTEEISSK VVFMTDNCLL QHYIKDRSLP GVSCVIIDEA
0401: HERSLNTDLL LALLKDLMCR RIDLRLVIMS ATADAYQLSD YFFGCGILCV TGRNFPVEII YSPSDAEGSS GTGRIAPYAD DVVKKAVEVH KTEKEGTILA
0501: FLTSQAEVEW ACERFIAPSA VALPLHGKLS FEEQFRVFQN HSGKRKVIFA TNIAETSLTI PGVKYVIDSG MVKESKYEPR TGMSILRVCR VSQSSARQRA
0601: GRAGRTEPGR CYRLYSKHEF ELMNLNQEPE IRRVHLGVAL LRILALGVDS VADFDFVDAP DPEAIAMAVK NLVQLGAVVE KNGVLELTQE GHCLVKLGLE
0701: PKLGKLILGC FRHRMGKEGI VLAAVMANAS SIFCRVGSLD DKMKADCLKV QFCNPSGDLF TLLSVYKEWA SLPRERRNKW CWDNSLNAKS MRRCEDTVKE
0801: LEICIERELS LVSPSYWVWN PTEGNNNKHD KRLKTVILAS LAENVAMYTG YDQLGYEVAL TGQQVQLHPS CSLLAFGQKP TWVVFGELLS VVDQYLVCVT
0901: SFDFEALSLL DPPPPFDASH MDEWRLRVEK VAGCSSTLLK RFCGKSNCGL LSIVSRARSL CVDERISIQV DVDQNEILLY APPHDMDKVS ALVSDALECE
1001: KKWMRNECLE KYIYHGRGQV PMALFGSGAQ IKHLEVDQRF LTADVFYYGD SFVDDRELLR FLERKIDVCI CSIHKFAGNK QDCDEKDKWG RITFLTPESA
1101: MKATEIQRFD FNGSVLKLFP SLATGGGGMF KMPSFPSVTA MIRWPQREST GRGVLKCPSG DVHSVFNGTS DIVIGTRYAR FETDQRFSDS ILITSIDSGL
1201: VEADVLDALE FYTGRTDLEF FLLRRKSVRC PPPTVCADML HKRIFACMSS SSPEPNCVQV KVFEPKETDY FMRALITFDG RLHLEAAKAL EELDGEVLPG
1301: CLSWQKIKCE QKFQSSIICP ASVYNIVKRQ LNAKLTSFER QRGGTWHLEP THGGAYRVRI SAYATKPISE MRRSLEELVR GRPINHPGLT PRVLQHLSSR
1401: DGVILMRRIQ HETETYILLD RHSLTVRICG SEEKIAAAEQ ELVRSLLAYH ERQQLEIRLR GPQLRPDLMK EVVNRFGPDL QGIKEKVDGV DLKLNTRYHV
1501: IQVHGSVEMR QEVEKIVYEL AREGSEPGGK PDDIEVECPI CLCEVDDGYS LEGCSHLFCK ACLLEQLEAS MRNFDAFPIL CSHADCGAPI VLADMRALLS
1601: QEKLDELFKA SLSSFVTTSD GNFRFCSTPD CPSVYRVAVG PRESGEPFIC GACNAETCRR CHLEYHPYIT CERYKLFKED PDMSLKDWAK GKNVKECPFC
1701: KSTIEKSEGC NHLLCRCGKH ICWVCLDFFT HQEPCYEHLR AVHGGIGIFD ELGIPLL
Best Arabidopsis Sequence Match ( AT5G10370.1 )
(BLAST)
0001: MRNSFPPSDG GRSATDRRQQ SSHSSSTNRY NSRSAQSSPP LNHRPTWNQQ HSQYPNSNFP PNYRRDRNPS SGYSPPVTRA RPNFIVQLLH PAAANSDTKL
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
Arabidopsis Description
ATP-dependent RNA helicase DEAH12, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4KGU4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.