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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY02818 Canola nucleus 86.99 90.66
CDX85017 Canola cytosol, plastid 84.54 81.02
CDY36075 Canola nucleus 78.61 80.71
CDY16154 Canola nucleus, plastid 84.1 80.5
CDY34567 Canola nucleus 76.16 79.49
AT1G26370.1 Thale cress plastid 80.78 77.96
KRH70930 Soybean nucleus 67.92 66.67
KRH75071 Soybean nucleus 67.49 66.24
PGSC0003DMT400009842 Potato mitochondrion 35.12 64.46
VIT_01s0137g00640.t01 Wine grape nucleus 66.47 63.36
KXG22666 Sorghum nucleus 63.29 62.13
Os06t0192500-02 Rice mitochondrion 36.42 61.76
Solyc09g008120.2.1 Tomato nucleus 63.44 61.74
TraesCS7D01G157100.1 Wheat plastid 62.72 60.87
TraesCS7A01G156700.1 Wheat plastid 62.57 60.73
TraesCS7B01G060800.1 Wheat plastid 62.43 60.59
Zm00001d011963_P002 Maize plasma membrane 62.43 59.92
HORVU7Hr1G032080.3 Barley plastid 62.72 52.99
GSMUA_Achr5P05110_001 Banana nucleus 63.87 43.5
CDX74061 Canola cytosol 19.22 41.43
CDY68405 Canola nucleus 37.72 38.96
CDX74059 Canola nucleus 14.6 38.26
CDX99466 Canola nucleus 37.86 37.43
CDX78859 Canola nucleus 37.72 37.39
CDX83337 Canola cytosol 38.73 37.07
CDX76626 Canola nucleus 38.44 37.05
CDX95715 Canola cytosol 38.73 36.97
CDY11413 Canola nucleus 38.29 36.91
CDY37024 Canola cytosol, mitochondrion 17.2 36.73
CDY23338 Canola cytosol 20.66 33.89
CDY11762 Canola nucleus 33.81 33.24
CDX90112 Canola nucleus 33.81 33.19
CDY40514 Canola nucleus 40.03 32.17
CDY60185 Canola nucleus 39.88 32.13
CDY26898 Canola nucleus 41.47 27.49
CDY32278 Canola endoplasmic reticulum 41.47 27.49
CDX83624 Canola nucleus 41.47 25.74
CDY13640 Canola nucleus 41.47 25.51
CDY23802 Canola nucleus 17.63 23.24
CDX85676 Canola nucleus 36.85 20.43
CDX91151 Canola nucleus 36.85 20.42
CDX84588 Canola plastid, vacuole 28.47 19.03
CDX79642 Canola nucleus, vacuole 28.47 19.03
CDY48353 Canola nucleus 31.21 17.66
CDY34159 Canola nucleus 31.5 17.62
CDX91491 Canola nucleus 1.59 17.46
CDY51663 Canola nucleus 1.59 17.46
CDY57512 Canola nucleus 27.6 16.83
CDY17694 Canola nucleus 27.46 16.74
CDX93688 Canola plastid 28.47 16.69
CDY40601 Canola nucleus, plastid 28.32 16.6
CDY10756 Canola nucleus 25.29 16.07
CDX70187 Canola mitochondrion 26.45 15.83
CDX98799 Canola mitochondrion 26.3 15.77
CDX97797 Canola nucleus 25.87 13.87
CDY29644 Canola nucleus 25.72 13.62
CDY39917 Canola nucleus 27.46 13.45
CDY63687 Canola nucleus, plastid 21.53 13.42
CDY29164 Canola nucleus 27.46 13.34
CDY10215 Canola nucleus 24.57 13.24
CDX78376 Canola plastid 30.64 12.07
CDX69841 Canola plastid 30.64 12.0
CDX81170 Canola plastid 30.49 11.97
CDX96996 Canola nucleus 30.49 11.93
Protein Annotations
Gene3D:1.20.120.1080MapMan:16.4.7.1.7Gene3D:3.40.50.300GO:A0A078H5G3UniProt:A0A078H5G3EnsemblPlants:CDY32702
ProteinID:CDY32702ProteinID:CDY32702.1InterPro:DNA/RNA_helicase_DEAH_CSInterPro:DUF1605GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004386GO:GO:0005488GO:GO:0005524GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00052752001
InterPro:Helicase-assoc_domInterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001InterPro:P-loop_NTPase
PFAM:PF00271PFAM:PF04408PFAM:PF07717ScanProsite:PS00690PFscan:PS51192PFscan:PS51194
PANTHER:PTHR18934PANTHER:PTHR18934:SF85SMART:SM00487SMART:SM00490SMART:SM00847SUPFAM:SSF52540
UniParc:UPI0004EE208DSEG:seg::::
Description
BnaA02g07640DBnaA02g07640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5G3]
Coordinates
chrLK032298:+:271987..274950
Molecular Weight (calculated)
77756.6 Da
IEP (calculated)
6.301
GRAVY (calculated)
-0.238
Length
692 amino acids
Sequence
(BLAST)
001: MTSTAQGELK QNPKSPVDSG FSMRRQKIAE HRKSLPIASV EKSLIEEVQK NDILIIVGET GSYLIINSQL LPQFLFNAGF CRGGKMVGIS QPSCIAAVTV
101: AKRVAEECDV QLGQRVGYSI MFDDTTCSST SLKYMTDALL LREALVDPLL SRYSVIIVDE AHERTVHTDV LLALLKKVQL DRSKAANETS EIGNKGLEVQ
201: AKTNVSPLKL IIMSASLDDA RVFSEYYGGA KALHVQGRRQ FTVDILYTVH PETDYYVDAA LVITIFQIHL EEKPGDILVF LTGQDEIESV ERLVKERLEH
301: LPEDKRKLLP LPIFSSDQLM TVSAPAPIGF RKVVLATSIA ETSITIPGIR YVVDPGCVKA RTYDPSKGME TLDVVPASKT QALQRSGRAG REGPGKCFRL
401: YREREFEKME DSTKPEIKRC NLSNVILQLK ALGYDDIFGF DFIDKPSRSA IVKALAELRL LGALTDDCKL EEPAGDQMAR LPVDPVYSRA LILANQSYCL
501: EEMLITVAML SVESIFCDPP REKREEARTS RNHFASVEGD HLTYLGVYRE SNEFLEAENS EAEVDEILRK WCKDNFVNSR SLKHARDIYR QIRGSVEQMG
601: FNVSSSGNDM LEYRRCLAAS FFLKAAQRQM DGTYRALESG EIVHIHPTSV LFRSKPECVI FNELMQTSKK YIKNLTRIDP LWLAPHHYNT EE
Best Arabidopsis Sequence Match ( AT1G26370.1 )
(BLAST)
001: MPSMAQGELK SFVQNSRPNP KSPTVSPFSM RQKIAEHRRS LPIASVEKRL VEEVQKNDIL IIVGETGSGK TTQLPQFLYN AGFCREGKMI GITQPRRIAA
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE
Arabidopsis Description
RID1Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Source:UniProtKB/Swiss-Prot;Acc:F4IE66]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.