Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY02818 | Canola | nucleus | 86.99 | 90.66 |
CDX85017 | Canola | cytosol, plastid | 84.54 | 81.02 |
CDY36075 | Canola | nucleus | 78.61 | 80.71 |
CDY16154 | Canola | nucleus, plastid | 84.1 | 80.5 |
CDY34567 | Canola | nucleus | 76.16 | 79.49 |
AT1G26370.1 | Thale cress | plastid | 80.78 | 77.96 |
KRH70930 | Soybean | nucleus | 67.92 | 66.67 |
KRH75071 | Soybean | nucleus | 67.49 | 66.24 |
PGSC0003DMT400009842 | Potato | mitochondrion | 35.12 | 64.46 |
VIT_01s0137g00640.t01 | Wine grape | nucleus | 66.47 | 63.36 |
KXG22666 | Sorghum | nucleus | 63.29 | 62.13 |
Os06t0192500-02 | Rice | mitochondrion | 36.42 | 61.76 |
Solyc09g008120.2.1 | Tomato | nucleus | 63.44 | 61.74 |
TraesCS7D01G157100.1 | Wheat | plastid | 62.72 | 60.87 |
TraesCS7A01G156700.1 | Wheat | plastid | 62.57 | 60.73 |
TraesCS7B01G060800.1 | Wheat | plastid | 62.43 | 60.59 |
Zm00001d011963_P002 | Maize | plasma membrane | 62.43 | 59.92 |
HORVU7Hr1G032080.3 | Barley | plastid | 62.72 | 52.99 |
GSMUA_Achr5P05110_001 | Banana | nucleus | 63.87 | 43.5 |
CDX74061 | Canola | cytosol | 19.22 | 41.43 |
CDY68405 | Canola | nucleus | 37.72 | 38.96 |
CDX74059 | Canola | nucleus | 14.6 | 38.26 |
CDX99466 | Canola | nucleus | 37.86 | 37.43 |
CDX78859 | Canola | nucleus | 37.72 | 37.39 |
CDX83337 | Canola | cytosol | 38.73 | 37.07 |
CDX76626 | Canola | nucleus | 38.44 | 37.05 |
CDX95715 | Canola | cytosol | 38.73 | 36.97 |
CDY11413 | Canola | nucleus | 38.29 | 36.91 |
CDY37024 | Canola | cytosol, mitochondrion | 17.2 | 36.73 |
CDY23338 | Canola | cytosol | 20.66 | 33.89 |
CDY11762 | Canola | nucleus | 33.81 | 33.24 |
CDX90112 | Canola | nucleus | 33.81 | 33.19 |
CDY40514 | Canola | nucleus | 40.03 | 32.17 |
CDY60185 | Canola | nucleus | 39.88 | 32.13 |
CDY26898 | Canola | nucleus | 41.47 | 27.49 |
CDY32278 | Canola | endoplasmic reticulum | 41.47 | 27.49 |
CDX83624 | Canola | nucleus | 41.47 | 25.74 |
CDY13640 | Canola | nucleus | 41.47 | 25.51 |
CDY23802 | Canola | nucleus | 17.63 | 23.24 |
CDX85676 | Canola | nucleus | 36.85 | 20.43 |
CDX91151 | Canola | nucleus | 36.85 | 20.42 |
CDX84588 | Canola | plastid, vacuole | 28.47 | 19.03 |
CDX79642 | Canola | nucleus, vacuole | 28.47 | 19.03 |
CDY48353 | Canola | nucleus | 31.21 | 17.66 |
CDY34159 | Canola | nucleus | 31.5 | 17.62 |
CDX91491 | Canola | nucleus | 1.59 | 17.46 |
CDY51663 | Canola | nucleus | 1.59 | 17.46 |
CDY57512 | Canola | nucleus | 27.6 | 16.83 |
CDY17694 | Canola | nucleus | 27.46 | 16.74 |
CDX93688 | Canola | plastid | 28.47 | 16.69 |
CDY40601 | Canola | nucleus, plastid | 28.32 | 16.6 |
CDY10756 | Canola | nucleus | 25.29 | 16.07 |
CDX70187 | Canola | mitochondrion | 26.45 | 15.83 |
CDX98799 | Canola | mitochondrion | 26.3 | 15.77 |
CDX97797 | Canola | nucleus | 25.87 | 13.87 |
CDY29644 | Canola | nucleus | 25.72 | 13.62 |
CDY39917 | Canola | nucleus | 27.46 | 13.45 |
CDY63687 | Canola | nucleus, plastid | 21.53 | 13.42 |
CDY29164 | Canola | nucleus | 27.46 | 13.34 |
CDY10215 | Canola | nucleus | 24.57 | 13.24 |
CDX78376 | Canola | plastid | 30.64 | 12.07 |
CDX69841 | Canola | plastid | 30.64 | 12.0 |
CDX81170 | Canola | plastid | 30.49 | 11.97 |
CDX96996 | Canola | nucleus | 30.49 | 11.93 |
Protein Annotations
Gene3D:1.20.120.1080 | MapMan:16.4.7.1.7 | Gene3D:3.40.50.300 | GO:A0A078H5G3 | UniProt:A0A078H5G3 | EnsemblPlants:CDY32702 |
ProteinID:CDY32702 | ProteinID:CDY32702.1 | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 |
GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00052752001 |
InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase |
PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 |
PANTHER:PTHR18934 | PANTHER:PTHR18934:SF85 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 |
UniParc:UPI0004EE208D | SEG:seg | : | : | : | : |
Description
BnaA02g07640DBnaA02g07640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5G3]
Coordinates
chrLK032298:+:271987..274950
Molecular Weight (calculated)
77756.6 Da
IEP (calculated)
6.301
GRAVY (calculated)
-0.238
Length
692 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSTAQGELK QNPKSPVDSG FSMRRQKIAE HRKSLPIASV EKSLIEEVQK NDILIIVGET GSYLIINSQL LPQFLFNAGF CRGGKMVGIS QPSCIAAVTV
101: AKRVAEECDV QLGQRVGYSI MFDDTTCSST SLKYMTDALL LREALVDPLL SRYSVIIVDE AHERTVHTDV LLALLKKVQL DRSKAANETS EIGNKGLEVQ
201: AKTNVSPLKL IIMSASLDDA RVFSEYYGGA KALHVQGRRQ FTVDILYTVH PETDYYVDAA LVITIFQIHL EEKPGDILVF LTGQDEIESV ERLVKERLEH
301: LPEDKRKLLP LPIFSSDQLM TVSAPAPIGF RKVVLATSIA ETSITIPGIR YVVDPGCVKA RTYDPSKGME TLDVVPASKT QALQRSGRAG REGPGKCFRL
401: YREREFEKME DSTKPEIKRC NLSNVILQLK ALGYDDIFGF DFIDKPSRSA IVKALAELRL LGALTDDCKL EEPAGDQMAR LPVDPVYSRA LILANQSYCL
501: EEMLITVAML SVESIFCDPP REKREEARTS RNHFASVEGD HLTYLGVYRE SNEFLEAENS EAEVDEILRK WCKDNFVNSR SLKHARDIYR QIRGSVEQMG
601: FNVSSSGNDM LEYRRCLAAS FFLKAAQRQM DGTYRALESG EIVHIHPTSV LFRSKPECVI FNELMQTSKK YIKNLTRIDP LWLAPHHYNT EE
101: AKRVAEECDV QLGQRVGYSI MFDDTTCSST SLKYMTDALL LREALVDPLL SRYSVIIVDE AHERTVHTDV LLALLKKVQL DRSKAANETS EIGNKGLEVQ
201: AKTNVSPLKL IIMSASLDDA RVFSEYYGGA KALHVQGRRQ FTVDILYTVH PETDYYVDAA LVITIFQIHL EEKPGDILVF LTGQDEIESV ERLVKERLEH
301: LPEDKRKLLP LPIFSSDQLM TVSAPAPIGF RKVVLATSIA ETSITIPGIR YVVDPGCVKA RTYDPSKGME TLDVVPASKT QALQRSGRAG REGPGKCFRL
401: YREREFEKME DSTKPEIKRC NLSNVILQLK ALGYDDIFGF DFIDKPSRSA IVKALAELRL LGALTDDCKL EEPAGDQMAR LPVDPVYSRA LILANQSYCL
501: EEMLITVAML SVESIFCDPP REKREEARTS RNHFASVEGD HLTYLGVYRE SNEFLEAENS EAEVDEILRK WCKDNFVNSR SLKHARDIYR QIRGSVEQMG
601: FNVSSSGNDM LEYRRCLAAS FFLKAAQRQM DGTYRALESG EIVHIHPTSV LFRSKPECVI FNELMQTSKK YIKNLTRIDP LWLAPHHYNT EE
001: MPSMAQGELK SFVQNSRPNP KSPTVSPFSM RQKIAEHRRS LPIASVEKRL VEEVQKNDIL IIVGETGSGK TTQLPQFLYN AGFCREGKMI GITQPRRIAA
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE
Arabidopsis Description
RID1Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Source:UniProtKB/Swiss-Prot;Acc:F4IE66]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.