Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32702 | Canola | nucleus | 90.66 | 86.99 |
| CDY36075 | Canola | nucleus | 80.12 | 78.93 |
| CDX85017 | Canola | cytosol, plastid | 84.64 | 77.84 |
| CDY16154 | Canola | nucleus, plastid | 84.49 | 77.59 |
| CDY34567 | Canola | nucleus | 76.36 | 76.47 |
| AT1G26370.1 | Thale cress | plastid | 80.42 | 74.48 |
| PGSC0003DMT400009842 | Potato | mitochondrion | 37.05 | 65.25 |
| KRH70930 | Soybean | nucleus | 68.22 | 64.26 |
| KRH75071 | Soybean | nucleus | 67.92 | 63.97 |
| Os06t0192500-02 | Rice | mitochondrion | 37.65 | 61.27 |
| VIT_01s0137g00640.t01 | Wine grape | nucleus | 65.81 | 60.19 |
| KXG22666 | Sorghum | nucleus | 63.25 | 59.57 |
| Solyc09g008120.2.1 | Tomato | nucleus | 63.55 | 59.35 |
| TraesCS7A01G156700.1 | Wheat | plastid | 62.65 | 58.34 |
| TraesCS7B01G060800.1 | Wheat | plastid | 62.65 | 58.34 |
| TraesCS7D01G157100.1 | Wheat | plastid | 62.65 | 58.34 |
| Zm00001d011963_P002 | Maize | plasma membrane | 62.5 | 57.56 |
| HORVU7Hr1G032080.3 | Barley | plastid | 62.5 | 50.67 |
| GSMUA_Achr5P05110_001 | Banana | nucleus | 63.7 | 41.63 |
| CDY68405 | Canola | nucleus | 37.2 | 36.87 |
| CDX74061 | Canola | cytosol | 17.62 | 36.45 |
| CDY37024 | Canola | cytosol, mitochondrion | 17.62 | 36.11 |
| CDX99466 | Canola | nucleus | 37.35 | 35.43 |
| CDX78859 | Canola | nucleus | 37.2 | 35.39 |
| CDX83337 | Canola | cytosol | 38.25 | 35.13 |
| CDX95715 | Canola | cytosol | 38.25 | 35.03 |
| CDX76626 | Canola | nucleus | 37.8 | 34.96 |
| CDY11413 | Canola | nucleus | 37.65 | 34.82 |
| CDY23338 | Canola | cytosol | 21.69 | 34.12 |
| CDX74059 | Canola | nucleus | 12.95 | 32.58 |
| CDY11762 | Canola | nucleus | 33.28 | 31.39 |
| CDX90112 | Canola | nucleus | 33.28 | 31.35 |
| CDY60185 | Canola | nucleus | 39.91 | 30.85 |
| CDY40514 | Canola | nucleus | 39.91 | 30.78 |
| CDY26898 | Canola | nucleus | 41.27 | 26.25 |
| CDY32278 | Canola | endoplasmic reticulum | 41.27 | 26.25 |
| CDX83624 | Canola | nucleus | 41.27 | 24.57 |
| CDY13640 | Canola | nucleus | 41.27 | 24.36 |
| CDY23802 | Canola | nucleus | 16.27 | 20.57 |
| CDX85676 | Canola | nucleus | 36.14 | 19.23 |
| CDX91151 | Canola | nucleus | 36.14 | 19.22 |
| CDX79642 | Canola | nucleus, vacuole | 27.86 | 17.87 |
| CDX84588 | Canola | plastid, vacuole | 27.86 | 17.87 |
| CDY48353 | Canola | nucleus | 31.78 | 17.25 |
| CDY34159 | Canola | nucleus | 32.08 | 17.22 |
| CDY57512 | Canola | nucleus | 27.56 | 16.12 |
| CDY17694 | Canola | nucleus | 27.41 | 16.04 |
| CDX93688 | Canola | plastid | 28.46 | 16.02 |
| CDY40601 | Canola | nucleus, plastid | 28.31 | 15.92 |
| CDY10756 | Canola | nucleus | 26.05 | 15.89 |
| CDX70187 | Canola | mitochondrion | 26.05 | 14.97 |
| CDX98799 | Canola | mitochondrion | 25.9 | 14.9 |
| CDY51663 | Canola | nucleus | 1.36 | 14.29 |
| CDX91491 | Canola | nucleus | 1.36 | 14.29 |
| CDX97797 | Canola | nucleus | 26.36 | 13.56 |
| CDY10215 | Canola | nucleus | 25.75 | 13.32 |
| CDY29644 | Canola | nucleus | 26.2 | 13.31 |
| CDY63687 | Canola | nucleus, plastid | 21.99 | 13.15 |
| CDY39917 | Canola | nucleus | 27.56 | 12.95 |
| CDY29164 | Canola | nucleus | 27.56 | 12.85 |
| CDX78376 | Canola | plastid | 30.12 | 11.38 |
| CDX96996 | Canola | nucleus | 30.27 | 11.36 |
| CDX69841 | Canola | plastid | 30.12 | 11.32 |
| CDX81170 | Canola | plastid | 29.97 | 11.29 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078ETB7 | InterPro:AAA+_ATPase | EnsemblPlants:CDY02818 |
| ProteinID:CDY02818 | ProteinID:CDY02818.1 | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00114996001 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 |
| ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF85 | SMART:SM00382 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | UniParc:UPI0004EBA61E | SEG:seg |
Description
BnaC02g10710D
Coordinates
chrLK031937:+:590210..593390
Molecular Weight (calculated)
74570.2 Da
IEP (calculated)
8.450
GRAVY (calculated)
-0.223
Length
664 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSTAQGELK QNPKTPVASR FSMRRQKIAE HRKSLPIASV EKRLIEEVQK NDILIIVGET GSGKTTQLPQ FLFNAGFCRG GKMVGISQPS CIAAVTVAKR
101: VAEECDVQLG QRVGYSIMFD DTTCSSTSLK YMTDALLLRE ALVDPLLSRY SVIIVDEAHE RTVHTDVLLA LLKKVQLDRS IGNKGLEVEA KTNDEIGGVL
201: RGCQISPLKL IIMSASLDAR VFSEYYGGAK ALHVQGRQFT VDILYTVHPV TDYAALVITI FQMRLNLLKD LSKRKILPLA IFSALPSDQL MRVFAPAPIG
301: FRKVVLATNI AETSITIPGI RYVVDPGRVK ARTYDPSKGM ETLDAVPTSK AQVLQRSGHA GREGPGKCFR LYRQREFEKL EDSTKPEIKR CNLSNVILQL
401: KALGYDDIFG FDFIDKPSRS AIVKALAELH LLGALTDDCK LEKPAGDQMA RLPLDPVYSR ALILANQSNC LEEMLITVAM LSVESIFYDP PREKREEART
501: SRNHFASVEG DHLTYLGVYR ESNEFLEAEN SEEAEVDQTL RKWCKDNFVN SRSLKHARDI YRKIRGNVEQ MGFNVSSCGN DMLEYRRCLA ASFFLIAAQR
601: QMDGTYRALE SGEIVHIHPT SVLFRSKPEC VFFNELMQTS KKYIKNLTRI DPVWSAHHHY NTEE
101: VAEECDVQLG QRVGYSIMFD DTTCSSTSLK YMTDALLLRE ALVDPLLSRY SVIIVDEAHE RTVHTDVLLA LLKKVQLDRS IGNKGLEVEA KTNDEIGGVL
201: RGCQISPLKL IIMSASLDAR VFSEYYGGAK ALHVQGRQFT VDILYTVHPV TDYAALVITI FQMRLNLLKD LSKRKILPLA IFSALPSDQL MRVFAPAPIG
301: FRKVVLATNI AETSITIPGI RYVVDPGRVK ARTYDPSKGM ETLDAVPTSK AQVLQRSGHA GREGPGKCFR LYRQREFEKL EDSTKPEIKR CNLSNVILQL
401: KALGYDDIFG FDFIDKPSRS AIVKALAELH LLGALTDDCK LEKPAGDQMA RLPLDPVYSR ALILANQSNC LEEMLITVAM LSVESIFYDP PREKREEART
501: SRNHFASVEG DHLTYLGVYR ESNEFLEAEN SEEAEVDQTL RKWCKDNFVN SRSLKHARDI YRKIRGNVEQ MGFNVSSCGN DMLEYRRCLA ASFFLIAAQR
601: QMDGTYRALE SGEIVHIHPT SVLFRSKPEC VFFNELMQTS KKYIKNLTRI DPVWSAHHHY NTEE
001: MPSMAQGELK SFVQNSRPNP KSPTVSPFSM RQKIAEHRRS LPIASVEKRL VEEVQKNDIL IIVGETGSGK TTQLPQFLYN AGFCREGKMI GITQPRRIAA
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE
Arabidopsis Description
RID1Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Source:UniProtKB/Swiss-Prot;Acc:F4IE66]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.