CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16154	Canola	nucleus, plastid	97.78	97.65
CDY36075	Canola	nucleus	81.02	86.8
CDY02818	Canola	nucleus	77.84	84.64
CDY32702	Canola	nucleus	81.02	84.54
AT1G26370.1	Thale cress	plastid	83.93	84.52
CDY34567	Canola	nucleus	77.29	84.16
KRH70930	Soybean	nucleus	69.25	70.92
KRH75071	Soybean	nucleus	68.84	70.5
VIT_01s0137g00640.t01	Wine grape	nucleus	67.59	67.22
PGSC0003DMT400009842	Potato	mitochondrion	34.9	66.84
Solyc09g008120.2.1	Tomato	nucleus	64.96	65.96
KXG22666	Sorghum	nucleus	63.57	65.11
Os06t0192500-02	Rice	mitochondrion	36.57	64.71
TraesCS7A01G156700.1	Wheat	plastid	63.57	64.38
TraesCS7D01G157100.1	Wheat	plastid	63.57	64.38
TraesCS7B01G060800.1	Wheat	plastid	63.3	64.1
Zm00001d011963_P002	Maize	plasma membrane	63.02	63.11
HORVU7Hr1G032080.3	Barley	plastid	63.57	56.04
GSMUA_Achr5P05110_001	Banana	nucleus	65.1	46.26
CDX74061	Canola	cytosol	19.25	43.3
CDY68405	Canola	nucleus	39.47	42.54
CDX76626	Canola	nucleus	41.0	41.23
CDY11413	Canola	nucleus	40.86	41.09
CDX83337	Canola	cytosol	41.14	41.08
CDX95715	Canola	cytosol	41.14	40.97
CDX74059	Canola	nucleus	14.82	40.53
CDX99466	Canola	nucleus	38.78	40.0
CDX78859	Canola	nucleus	38.64	39.97
CDY37024	Canola	cytosol, mitochondrion	16.9	37.65
CDY23338	Canola	cytosol	21.47	36.73
CDY11762	Canola	nucleus	35.6	36.51
CDX90112	Canola	nucleus	35.6	36.45
CDY60185	Canola	nucleus	41.14	34.58
CDY40514	Canola	nucleus	41.0	34.38
CDY26898	Canola	nucleus	43.07	29.79
CDY32278	Canola	endoplasmic reticulum	43.07	29.79
CDX83624	Canola	nucleus	42.52	27.53
CDY13640	Canola	nucleus	42.52	27.29
CDY23802	Canola	nucleus	18.14	24.95
CDX85676	Canola	nucleus	38.23	22.12
CDX91151	Canola	nucleus	38.23	22.1
CDX84588	Canola	plastid, vacuole	29.64	20.68
CDX79642	Canola	nucleus, vacuole	29.64	20.68
CDX91491	Canola	nucleus	1.8	20.63
CDY51663	Canola	nucleus	1.8	20.63
CDY48353	Canola	nucleus	31.3	18.48
CDY34159	Canola	nucleus	31.58	18.43
CDX93688	Canola	plastid	29.92	18.31
CDY40601	Canola	nucleus, plastid	29.78	18.2
CDY57512	Canola	nucleus	28.53	18.15
CDY17694	Canola	nucleus	28.53	18.15
CDY10756	Canola	nucleus	26.45	17.54
CDX70187	Canola	mitochondrion	27.98	17.47
CDX98799	Canola	mitochondrion	27.84	17.42
CDX97797	Canola	nucleus	26.87	15.03
CDY39917	Canola	nucleus	29.36	15.0
CDY29164	Canola	nucleus	29.22	14.82
CDY29644	Canola	nucleus	26.73	14.77
CDY63687	Canola	nucleus, plastid	22.44	14.59
CDY10215	Canola	nucleus	25.48	14.33
CDX78376	Canola	plastid	31.3	12.86
CDX69841	Canola	plastid	31.44	12.85
CDX96996	Canola	nucleus	31.3	12.78
CDX81170	Canola	plastid	31.16	12.76

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.1.7	Gene3D:3.40.50.300	GO:A0A078D7C2	InterPro:AAA+_ATPase	EnsemblPlants:CDX85017
ProteinID:CDX85017	ProteinID:CDX85017.1	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0003674	GO:GO:0003824
GO:GO:0004386	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00142449001	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717
ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF85	SMART:SM00382
SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI0004EE60AE	SEG:seg

Description

BnaC05g20380D

Coordinates

chrLK031839:-:1522569..1526031

Molecular Weight (calculated)

81875.0 Da

IEP (calculated)

8.348

GRAVY (calculated)

-0.335

Length

722 amino acids

Sequence
(BLAST)

001: MPSMAQGELK SSVLNSKSPI ASRFRMRQKI AEHRKSLPIA SVEKRLIEEV QKNDILIIVG ETGSGKTTQL PQFLFSAGFC REGKMVGITQ PRRIAAVTIA
101: KRVAEESDVE LGQRVGYSIR FDDCTSSYTR LKYMTDGFLL REALLDPLLS RYSVIIVDEA HERTVHTDVL LALLKEVQRA RSKHEGVQTK AGDEIGVKRN
201: GGVLRVCQGR KVSPLKLIIM SASLDARVFS EYFGGAKAVH VEGRQFPVDI FYTVHPETDY VDAALVTIFQ IHVEEKPGDI LVFLTGQDEI ESVERLVKER
301: LEHLPEDKRK LLPLAIFSAL PSEQQMQVFA PAPTGFRKVI LATNIAETSI TIPGIRYVID PGFVKARTYD PSKGMETLDV VPASKAQSLQ RSGRAGREGP
401: GKCFRLYPER EFEKLEDSTK PEIKRCNLSN VILQLKALGI DDIVGFDFID KPSRGAIVKA LTELRLLGAL TDDCKLEKPA GEQMSRLPLD PVYSRALILA
501: NNQFNCLEEM LITVAMLSVE SIFYDPREKR EEARTSRNHF ASVEGDHLTY LSVYRESNEF LEKRKTESSE AKIDKIMKKW CKDNFVNNRS LKHARDTYRQ
601: IREHVEQMGF NVSSCGNDML EYRRCLAASF FLKAAQRQMD GTYRALESGE IVHIHPTSVL FRSKPECVIF NELMQTSKKY IKNLTRIDHL WLAELAPHHY
701: KTDDEMNDLT QEMECCRLKL SK

Best Arabidopsis Sequence Match ( AT1G26370.1 )
(BLAST)

001: MPSMAQGELK SFVQNSRPNP KSPTVSPFSM RQKIAEHRRS LPIASVEKRL VEEVQKNDIL IIVGETGSGK TTQLPQFLYN AGFCREGKMI GITQPRRIAA
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE

Arabidopsis Description

RID1Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Source:UniProtKB/Swiss-Prot;Acc:F4IE66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.