Factsheet for Os06t0192500-02

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009842	Potato	mitochondrion	63.97	69.23
KXG22666	Sorghum	nucleus	93.38	54.04
TraesCS7A01G156700.1	Wheat	plastid	92.89	53.16
TraesCS7D01G157100.1	Wheat	plastid	92.65	53.02
TraesCS7B01G060800.1	Wheat	plastid	92.16	52.73
Zm00001d011963_P002	Maize	plasma membrane	91.91	52.01
HORVU7Hr1G032080.3	Barley	plastid	92.89	46.28
KRH70930	Soybean	nucleus	71.81	41.56
VIT_01s0137g00640.t01	Wine grape	nucleus	73.77	41.46
KRH75071	Soybean	nucleus	71.08	41.13
Solyc09g008120.2.1	Tomato	nucleus	67.89	38.96
CDY02818	Canola	nucleus	61.27	37.65
Bra011023.1-P	Field mustard	nucleus	63.24	37.45
CDY36075	Canola	nucleus	60.78	36.8
Os08t0335000-00	Rice	cytosol, nucleus	33.09	36.78
CDX85017	Canola	cytosol, plastid	64.71	36.57
CDY32702	Canola	nucleus	61.76	36.42
CDY34567	Canola	nucleus	59.07	36.35
CDY16154	Canola	nucleus, plastid	64.22	36.24
AT1G26370.1	Thale cress	plastid	62.75	35.7
Bra024720.1-P	Field mustard	nucleus	64.22	35.6
Os02t0301500-01	Rice	nucleus	45.59	34.07
GSMUA_Achr5P05110_001	Banana	nucleus	81.13	32.58
Os01t0212100-01	Rice	nucleus	38.73	22.57
Os03t0314100-01	Rice	cytosol, nucleus, plastid	29.41	21.28
Os11t0310800-01	Rice	nucleus	34.31	19.77
Os05t0389800-01	Rice	nucleus	47.3	18.04
Os06t0343100-01	Rice	nucleus	44.36	16.7
Os01t0118100-01	Rice	cytosol, mitochondrion, nucleus	27.7	13.81
Os07t0508000-01	Rice	nucleus	41.67	13.28
Os10t0471350-01	Rice	nucleus	30.88	12.63
Os03t0748800-01	Rice	mitochondrion	26.47	9.39
Os02t0736600-01	Rice	nucleus	29.17	9.36
Os07t0621500-01	Rice	cytosol, nucleus	29.17	9.25
Os01t0767700-01	Rice	nucleus	26.72	8.91
Os04t0432200-00	Rice	extracellular	0.98	5.48
Os02t0736800-01	Rice	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0N7KLP4	ProteinID:BAS96585.1	InterPro:DUF1605
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0043484	InterPro:Helicase-assoc_dom	InterPro:Helicase_C
InterPro:IPR001650	EnsemblPlantsGene:Os06g0192500	EnsemblPlants:Os06t0192500-02	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF85	SMART:SM00490	SMART:SM00847
SUPFAM:SSF52540	UniParc:UPI0003939EAE	:	:	:	:

Description

DEAD-like helicase, N-terminal domain containing protein. (Os06t0192500-01);Similar to ATP-dependent RNA helicase DHX8. (Os06t0192500-02)

Coordinates

chr6:+:4663089..4666890

Molecular Weight (calculated)

45805.4 Da

IEP (calculated)

8.741

GRAVY (calculated)

-0.237

Length

408 amino acids

Sequence
(BLAST)

001: IQERARQLPP QRSKIWTTPI YSSLPSEQQM NAFKPAPAGT RKVVLATNIA ETSVTIPGIK YVIDPGMVKA RAYNPVTGME SLIIIPVSKA QALQRSGRAG
101: REGPGKCYRL FQESEFDKLV DSTVPEIKRC NLANVVLQLK ALGIDDIIGF DFMEKPSRTA ILKSLEQLIL LGALTDDYKL SDPVGRQMAR LPLDPMYSKA
201: LIVASEFKCL EEMLIVVSML SVESIFFSPR EKLEEARAAR KSFESSEGDH ITLVNVYRAA KECLEKSKNA NAKEKTMEKA LNRWCRENFI NYRSLRHACD
301: VHSQIQGHVQ QMGLNVSSCG DDMVLFRRCL TAAFFLNAAM RQPDGSYRAL ATSQSVQIHP SSVLFQKKPD CAIFNELVRT SQNYVKDLTR IDPVWLAELA
401: PQYYATED

Best Arabidopsis Sequence Match ( AT1G26370.1 )
(BLAST)

001: MPSMAQGELK SFVQNSRPNP KSPTVSPFSM RQKIAEHRRS LPIASVEKRL VEEVQKNDIL IIVGETGSGK TTQLPQFLYN AGFCREGKMI GITQPRRIAA
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE

Arabidopsis Description

RID1Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Source:UniProtKB/Swiss-Prot;Acc:F4IE66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.