CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85017	Canola	cytosol, plastid	97.65	97.78
Bra024720.1-P	Field mustard	nucleus	98.2	96.47
CDY36075	Canola	nucleus	80.5	86.35
CDY02818	Canola	nucleus	77.59	84.49
CDY32702	Canola	nucleus	80.5	84.1
AT1G26370.1	Thale cress	plastid	83.26	83.96
CDY34567	Canola	nucleus	76.76	83.71
KRH70930	Soybean	nucleus	68.88	70.64
KRH75071	Soybean	nucleus	68.33	70.07
VIT_01s0137g00640.t01	Wine grape	nucleus	67.36	67.08
PGSC0003DMT400009842	Potato	mitochondrion	34.44	66.05
Solyc09g008120.2.1	Tomato	nucleus	64.32	65.4
KXG22666	Sorghum	nucleus	63.49	65.11
TraesCS7D01G157100.1	Wheat	plastid	63.62	64.52
TraesCS7A01G156700.1	Wheat	plastid	63.62	64.52
TraesCS7B01G060800.1	Wheat	plastid	63.35	64.24
Os06t0192500-02	Rice	mitochondrion	36.24	64.22
Zm00001d011963_P002	Maize	plasma membrane	62.93	63.11
HORVU7Hr1G032080.3	Barley	plastid	63.35	55.92
GSMUA_Achr5P05110_001	Banana	nucleus	64.73	46.06
CDX74061	Canola	cytosol	19.23	43.3
CDY68405	Canola	nucleus	39.42	42.54
CDX74059	Canola	nucleus	15.08	41.29
CDX76626	Canola	nucleus	40.8	41.09
CDY11413	Canola	nucleus	40.66	40.95
CDX83337	Canola	cytosol	40.94	40.94
CDX95715	Canola	cytosol	40.94	40.83
CDX99466	Canola	nucleus	38.17	39.43
CDX78859	Canola	nucleus	38.04	39.4
CDY37024	Canola	cytosol, mitochondrion	16.74	37.35
CDY23338	Canola	cytosol	21.16	36.26
CDY11762	Canola	nucleus	35.13	36.08
CDX90112	Canola	nucleus	35.13	36.03
CDY40514	Canola	nucleus	40.66	34.15
CDY60185	Canola	nucleus	40.53	34.11
CDY26898	Canola	nucleus	42.6	29.5
CDY32278	Canola	endoplasmic reticulum	42.6	29.5
CDX83624	Canola	nucleus	42.19	27.35
CDY13640	Canola	nucleus	42.19	27.11
CDY23802	Canola	nucleus	18.12	24.95
CDX85676	Canola	nucleus	38.17	22.12
CDX91151	Canola	nucleus	38.17	22.1
CDX79642	Canola	nucleus, vacuole	29.46	20.58
CDX84588	Canola	plastid, vacuole	29.46	20.58
CDY51663	Canola	nucleus	1.66	19.05
CDX91491	Canola	nucleus	1.66	19.05
CDX93688	Canola	plastid	29.88	18.31
CDY48353	Canola	nucleus	30.84	18.23
CDY40601	Canola	nucleus, plastid	29.74	18.2
CDY34159	Canola	nucleus	31.12	18.19
CDY57512	Canola	nucleus	28.35	18.06
CDY17694	Canola	nucleus	28.35	18.06
CDX70187	Canola	mitochondrion	27.94	17.47
CDY10756	Canola	nucleus	26.28	17.45
CDX98799	Canola	mitochondrion	27.8	17.42
CDY39917	Canola	nucleus	29.18	14.93
CDX97797	Canola	nucleus	26.42	14.79
CDY29164	Canola	nucleus	29.05	14.75
CDY29644	Canola	nucleus	26.42	14.61
CDY63687	Canola	nucleus, plastid	22.27	14.5
CDY10215	Canola	nucleus	25.45	14.33
CDX78376	Canola	plastid	31.12	12.81
CDX69841	Canola	plastid	31.26	12.79
CDX96996	Canola	nucleus	31.12	12.72
CDX81170	Canola	plastid	30.98	12.71

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.1.7	Gene3D:3.40.50.300	GO:A0A078FT99	UniProt:A0A078FT99	EnsemblPlants:CDY16154
ProteinID:CDY16154	ProteinID:CDY16154.1	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00090592001
InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase
PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR18934	PANTHER:PTHR18934:SF85	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540
UniParc:UPI0004EE1AAB	SEG:seg	:	:	:	:

Description

BnaA09g28880DBnaA09g28880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FT99]

Coordinates

chrLK032061:-:208296..211695

Molecular Weight (calculated)

81692.8 Da

IEP (calculated)

8.607

GRAVY (calculated)

-0.341

Length

723 amino acids

Sequence
(BLAST)

001: MPSMAQGELK SSVLPNPKPP IASRFSMRQK IAEHRKSLPI ASVEKRLIEE VQKNDILIIV GETGSGKTTQ LPQFLFSGGF CREGKMVGIT QPRRIAAVTI
101: AKRVAEESDV ELGQRVGYSI RFDDCTSSST RLKYMTDGFL LREALLDPLL SRYSVIVVDE AHERTVHTDV LLALLKEVQR ARSKHEGVQT KAGDEIGVKR
201: NGGVLRGCQG RKVSPLKLII MSASLDARVF SEYFGGAKAV HVEGRQFPVD IFYTVHPETD YVDAALVTIF QIHVEEKPGD ILVFLTGQDE IESVERLVKE
301: RLEHLPEDKR KLLPLAIFSA LPSEQQMQVF APAPTGFRKV ILATNIAETS ITIPGIRYVI DPGFVKARTY DPSKGMETLD VVPASKAQSL QRSGRAGREG
401: PGKCFRLYPE REFEKLDGST KPEIKRCNLS NVILQLKALG IDDIVGFDFI DKPSRGAIVK ALTELRLLGA LTDDCQLEKP AGEQMSRLPL DPVYSRALIL
501: ANKQFNCLEE MLITVAMLSV ESIFYDPREK REEARTSRNH FASIEGDHLT YLSVYRESNE FLEKRKTESS EAKIDKIMKK WCKDNFVNNR SLKHARDTYR
601: QIRGHVEQMG FNVSSCGNDM LEYRRCLAAS FFLKAAQRQM DGTYRALESG EIVHIHPTSV LFRSKPECVI FNELMQTSKK YIKNLTRIDH LWLAEFAPHH
701: YKTDDEMKDL TQEMESCRLK LSK

Best Arabidopsis Sequence Match ( AT1G26370.1 )
(BLAST)

001: MPSMAQGELK SFVQNSRPNP KSPTVSPFSM RQKIAEHRRS LPIASVEKRL VEEVQKNDIL IIVGETGSGK TTQLPQFLYN AGFCREGKMI GITQPRRIAA
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE

Arabidopsis Description

RID1Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Source:UniProtKB/Swiss-Prot;Acc:F4IE66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.