CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93688	Canola	plastid	98.81	98.9
AT1G48650.2	Thale cress	nucleus, plastid	90.77	88.89
VIT_17s0000g03030.t01	Wine grape	nucleus	67.91	75.88
Os01t0118100-01	Rice	cytosol, mitochondrion, nucleus	50.89	73.47
KRH41772	Soybean	plastid	70.03	70.26
KRH60477	Soybean	plastid	70.03	70.08
Solyc03g118920.2.1	Tomato	mitochondrion, nucleus	67.91	66.78
CDY17694	Canola	nucleus	61.56	64.05
TraesCS3A01G021300.1	Wheat	extracellular	67.32	63.91
TraesCS3B01G024900.1	Wheat	mitochondrion	67.32	63.75
KXG32067	Sorghum	mitochondrion	66.98	63.74
CDY57512	Canola	nucleus	61.22	63.7
HORVU3Hr1G002800.8	Barley	mitochondrion	66.89	63.35
GSMUA_Achr3P20920_001	Banana	mitochondrion, nucleus	66.81	63.07
TraesCS3D01G025600.1	Wheat	mitochondrion, nucleus, plastid	66.3	63.04
CDX70187	Canola	mitochondrion	57.66	58.91
CDX98799	Canola	mitochondrion	57.49	58.84
Zm00001d040082_P003	Maize	plastid	64.69	54.3
CDX84588	Canola	plastid, vacuole	37.85	43.19
CDX79642	Canola	nucleus, vacuole	37.76	43.09
CDY68405	Canola	nucleus	20.24	35.67
CDX76626	Canola	nucleus	20.41	33.57
CDX74059	Canola	nucleus	7.45	33.33
CDY11413	Canola	nucleus	20.24	33.29
CDX95715	Canola	cytosol	20.41	33.24
CDX83337	Canola	cytosol	20.24	33.06
CDX74061	Canola	cytosol	8.98	33.02
CDY34567	Canola	nucleus	17.78	31.67
CDY36075	Canola	nucleus	17.95	31.45
CDY11762	Canola	nucleus	18.29	30.68
CDX90112	Canola	nucleus	18.29	30.64
CDX78859	Canola	nucleus	17.95	30.37
CDY23338	Canola	cytosol	10.84	30.33
CDX99466	Canola	nucleus	17.95	30.29
CDX85017	Canola	cytosol, plastid	18.2	29.78
CDY16154	Canola	nucleus, plastid	18.2	29.74
CDY37024	Canola	cytosol, mitochondrion	8.13	29.63
CDY10756	Canola	nucleus	26.93	29.2
CDY32702	Canola	nucleus	16.6	28.32
CDY02818	Canola	nucleus	15.92	28.31
CDY60185	Canola	nucleus	20.49	28.17
CDY40514	Canola	nucleus	20.41	27.99
CDX97797	Canola	nucleus	27.86	25.48
CDY10215	Canola	nucleus	27.52	25.31
CDY29644	Canola	nucleus	27.86	25.17
CDY26898	Canola	nucleus	22.02	24.9
CDY32278	Canola	endoplasmic reticulum	21.93	24.81
CDY39917	Canola	nucleus	28.03	23.43
CDX83624	Canola	nucleus	22.02	23.32
CDY29164	Canola	nucleus	28.03	23.24
CDY13640	Canola	nucleus	22.1	23.2
CDX91151	Canola	nucleus	22.44	21.22
CDX85676	Canola	nucleus	22.35	21.15
CDY23802	Canola	nucleus	9.31	20.95
CDY63687	Canola	nucleus, plastid	19.48	20.72
CDY48353	Canola	nucleus	18.97	18.32
CDY34159	Canola	nucleus	19.14	18.27
CDX78376	Canola	plastid	21.68	14.57
CDX81170	Canola	plastid	21.59	14.46
CDX96996	Canola	nucleus	21.42	14.3
CDX69841	Canola	plastid	21.25	14.2
CDY51663	Canola	nucleus	0.59	11.11
CDX91491	Canola	nucleus	0.59	11.11

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078HSC7	UniProt:A0A078HSC7
EnsemblPlants:CDY40601	ProteinID:CDY40601	ProteinID:CDY40601.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00071437001	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014720	InterPro:P-loop_NTPase	PFAM:PF00035	PFAM:PF00270	PFAM:PF00271
PFAM:PF04408	PFAM:PF07717	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF192
SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	SUPFAM:SSF54768	UniParc:UPI0004EE2B91
InterPro:dsRBD_dom	SEG:seg	:	:	:	:

Description

BnaC06g02170DBnaC06g02170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSC7]

Coordinates

chrLK032475:-:107327..113390

Molecular Weight (calculated)

132695.0 Da

IEP (calculated)

9.195

GRAVY (calculated)

-0.307

Length

1181 amino acids

Sequence
(BLAST)

0001: MPYYSAIFRG HIKPNAVVVG AASMFIQHSS LHLFRSPNLL FSRPSSLVRS LHSQRSRVLS AKAGRSSLEW RVSNLPYFQK QGYGRIAYND YESSDESDRD
0101: IVGSSQSQQM AGSTLDNIDQ WRFKLTMLLR NGEDEEVVSR ERKDRRDFDH ISAMATRMGL YSRQYSKIIV ISKSPLPNYR PDLDDKRPQR EVVLPFGLQS
0201: EVDAHLHAFL DQKKMLIPEM SRPSSSDSLA TGYGNYEKPE TVMQNSLARE RILRPRSLQL RSKQQQWVDS PEGQKMVEFR KTLPAYKEKE ALLRAISANQ
0301: VIVVSGETGC GKTTQLPQYI LESEIEAACG AACSIICTQP RRISAISVSE RVAAERGEQI GESVGYKVRL EGMRGRDTRL LFCTTGVLLR RLLIDRSLKG
0401: VTHVVVDEIH ERGMNEDFLL IVLKDLLPRR PDLKLILMSA TLNAELFSSY FGGAPAMHIP GFTYPVRAHF LEDFLETTGY RLTSYNQIDD YGEEKTWKMQ
0501: KQAQFTKRKS QISSAVEGAL EAADFKGYQF RTRDSLSCWS PDSMGFNLIE NVLCHIVKGE RPGAVLVFMT GWDDINSLKK QLEAHHLLGD PNKVLLLACH
0601: GSMASSEQRL IFDRPPEGVR KVVLATNMAE TSITINDVVF VVDCGKAKET SYDALNNTPC LLPSWISKAA ARQRRGRAGR VMPGECYHLY PRCVYDAFAD
0701: YQQPELLRTP LQSLCLQIKS LGLGSISEFL SRALQPPEAL SVQNAVEYLK LIGALDDNEN LTALGKNLSM LPVEPKLGKM LILGAIFNCL DPIMTVVAGL
0801: SVRDPFLMPF DKKDLAESAR SKFSGRDCSD HLTLIRAYSG WKDAERTRSG NEYCWQNFLS AQTLKAMDSM RKQFFFLLKE ASLIDNVESC SKLSYDEQLV
0901: RAIICAGLFP GVCSVVNKEK SITLKTMEDG QVLLYTSSVN GNVQRIPFPW LVFNEKIKVN SVFLRDSTAV SDSVLLLFGD KVSSGGFDGH LKMLGGYLEF
1001: FMKPSLAYTY LSLKRELDEL IQNKLVNPKL DIQLYDKLMT AIRLLVSEDQ CEGRFVFGRK ALSPTTTKKL KVVGTQLPNS GGENDKNHLQ TVLARAGHGT
1101: PVYKTRQLKN NQFRAMVTFN GLDFMGKPCS SKKNAEKDAA HEALLWLQGE SKSSLNDLNH MSTLLKKDKS KKSARAPARW N

Best Arabidopsis Sequence Match ( AT1G48650.1 )
(BLAST)

0001: MQLYSAIFRG HIRPNAVVGA ASMFIQHNSI QLHRSPKLLL RPSSVVRSLH CRRSGGLVTH SQRSRVLCVK AARGDASSST LGIEWRAANL PYFQRQNSGY
0101: GRIAYNDYES SDESDRDVGS SQSQQMAGST LDNIDQWRFK LTMLLRNKED QEVVSRERKD RRDFDHISAL ATRMGLHSRQ YSKIVVISKA PLPNYRPDLD
0201: DKRPQREVVL PFGLQSEVDA HLHSFLDQKK TLIPEMPRQN SSESLANGYG NYETPETVMQ NSLARERILR PRSLQLKSKQ QQWVDSPEGQ KMVGFRKTLP
0301: AYKEKDALLK AIAANQVVVV SGETGCGKTT QLPQYILESE IEAARGATCS IICTQPRRIS AISVSERVAA ERGEQIGESV GYKVRLEGMR GRDTRLLFCT
0401: TGVLLRRLLV DRSLKGVTHV VVDEIHERGM NEDFLLIVLK DLLPRRPDLK LILMSATLNA ELFSSYFGGA PAMHIPGFTY PVRAHFLEDY LETSGYRLTT
0501: YNQIDDYGEE KTWKMQKQAQ FKKRKSLISS AVEDALEAAD FKGYNFRTRD SLSCWSPDSI GFNLIENVLC HIVKGERPGA VLVFMTGWDD INSLKNQLEA
0601: HSLLGDPNKV LLLACHGSMA SSEQRLIFDR PPEGIRKIVL ATNMAETSIT INDVVYVIDC GKAKETSYDA LNNTPCLLPS WISKAAARQR RGRAGRVMPG
0701: ECYHLYPRCV YEAFADYQQP ELLRTPLQSL CLQIKSLGLG SISEFLSRAL QPPEALSVQN AVEYLKIIGA LDDDENLTPL GKNLSMLPVE PKLGKMLILG
0801: AIFNCLDPVM TVVAGLSVRD PFLMPFDKKD LAETARSKFS GRDYSDHLTL VRAYNGWKDA ERTHSGYDYC WKNFLSSQTL KAMDSMRKQF FNLLKEASLI
0901: DNIEGCSKLS HDEHLVRAII CAGMFPGVCS VVNKEKSITL KTMEDGQVLL YSSSVNGNVP MIPFPWLVFN DKVKVNSVFL RDSTAVSDSV LLLFGDKISS
1001: GGFDGHLKML GGYLEFFMKP TLAYTYLSLK RELDELIQNK LVNPKLDIQL YDKLMTAIRL LVSEDQCEGR FVYGRKALSP TPAKKLKDVG AQLQNSGGEN
1101: NKNQLQTLLA RAGHGSPVYK TRQLKNNQFR SMVTFNGLDF MGKPCGSKKN AEKDAAHEAL LWLQGESKSS LNDLNHMSML LKKNKSKNHA KASTKWG

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4HYJ6]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.