Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G62310.1 | CDX83878 | AT1G17970.1 | 21798944 |
| AT3G62310.1 | CDX96741 | AT1G17970.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11413 | Canola | nucleus | 98.61 | 98.61 |
| AT3G62310.1 | Thale cress | nucleus | 94.71 | 93.66 |
| CDX83337 | Canola | cytosol | 92.62 | 91.98 |
| CDX95715 | Canola | cytosol | 92.34 | 91.45 |
| KRH69191 | Soybean | nucleus | 88.86 | 88.37 |
| KRG96553 | Soybean | nucleus | 88.3 | 87.93 |
| KRH68290 | Soybean | nucleus | 88.16 | 87.92 |
| PGSC0003DMT400023284 | Potato | nucleus | 87.74 | 87.14 |
| VIT_07s0005g01770.t01 | Wine grape | nucleus | 88.3 | 87.09 |
| Solyc01g079250.2.1 | Tomato | nucleus | 87.6 | 87.0 |
| TraesCS4A01G124200.2 | Wheat | cytosol | 87.05 | 86.93 |
| HORVU4Hr1G052730.3 | Barley | cytosol | 87.05 | 86.69 |
| TraesCS4D01G181700.1 | Wheat | cytosol | 87.05 | 86.69 |
| TraesCS4B01G180200.1 | Wheat | cytosol | 86.91 | 86.55 |
| KXG39505 | Sorghum | cytosol | 86.35 | 85.87 |
| Zm00001d028923_P002 | Maize | nucleus | 85.65 | 85.3 |
| KRH31768 | Soybean | cytosol, nucleus | 66.71 | 83.02 |
| CDY68405 | Canola | nucleus | 76.46 | 81.94 |
| Os03t0314100-01 | Rice | cytosol, nucleus, plastid | 63.93 | 81.38 |
| GSMUA_Achr1P18470_001 | Banana | cytosol | 39.41 | 79.49 |
| Zm00001d047601_P006 | Maize | nucleus | 85.38 | 79.3 |
| CDX74061 | Canola | cytosol | 29.39 | 65.73 |
| CDX74059 | Canola | nucleus | 23.4 | 63.64 |
| CDY37024 | Canola | cytosol, mitochondrion | 20.75 | 45.99 |
| CDY23338 | Canola | cytosol | 26.32 | 44.79 |
| CDX99466 | Canola | nucleus | 41.92 | 43.0 |
| CDX78859 | Canola | nucleus | 41.64 | 42.84 |
| CDY34567 | Canola | nucleus | 38.3 | 41.48 |
| CDX85017 | Canola | cytosol, plastid | 41.23 | 41.0 |
| CDY36075 | Canola | nucleus | 38.44 | 40.95 |
| CDY16154 | Canola | nucleus, plastid | 41.09 | 40.8 |
| CDY11762 | Canola | nucleus | 39.0 | 39.77 |
| CDX90112 | Canola | nucleus | 39.0 | 39.72 |
| CDY60185 | Canola | nucleus | 46.38 | 38.77 |
| CDY32702 | Canola | nucleus | 37.05 | 38.44 |
| CDY40514 | Canola | nucleus | 45.68 | 38.1 |
| CDY02818 | Canola | nucleus | 34.96 | 37.8 |
| CDY26898 | Canola | nucleus | 48.75 | 33.52 |
| CDY32278 | Canola | endoplasmic reticulum | 48.75 | 33.52 |
| CDX83624 | Canola | nucleus | 49.58 | 31.93 |
| CDY13640 | Canola | nucleus | 49.72 | 31.73 |
| CDX91491 | Canola | nucleus | 2.65 | 30.16 |
| CDY51663 | Canola | nucleus | 2.65 | 30.16 |
| CDY23802 | Canola | nucleus | 20.89 | 28.57 |
| CDX85676 | Canola | nucleus | 41.5 | 23.88 |
| CDX91151 | Canola | nucleus | 41.36 | 23.78 |
| CDX79642 | Canola | nucleus, vacuole | 32.45 | 22.51 |
| CDX84588 | Canola | plastid, vacuole | 32.31 | 22.42 |
| CDY17694 | Canola | nucleus | 32.31 | 20.44 |
| CDY40601 | Canola | nucleus, plastid | 33.57 | 20.41 |
| CDY57512 | Canola | nucleus | 32.17 | 20.35 |
| CDX93688 | Canola | plastid | 33.43 | 20.34 |
| CDX70187 | Canola | mitochondrion | 32.17 | 19.98 |
| CDX98799 | Canola | mitochondrion | 32.03 | 19.93 |
| CDY10756 | Canola | nucleus | 28.69 | 18.92 |
| CDY48353 | Canola | nucleus | 32.03 | 18.81 |
| CDY34159 | Canola | nucleus | 32.17 | 18.67 |
| CDX97797 | Canola | nucleus | 28.97 | 16.11 |
| CDY29644 | Canola | nucleus | 28.83 | 15.84 |
| CDY10215 | Canola | nucleus | 27.99 | 15.65 |
| CDY39917 | Canola | nucleus | 28.13 | 14.3 |
| CDY63687 | Canola | nucleus, plastid | 22.01 | 14.23 |
| CDY29164 | Canola | nucleus | 28.13 | 14.19 |
| CDX69841 | Canola | plastid | 31.2 | 12.68 |
| CDX81170 | Canola | plastid | 31.06 | 12.65 |
| CDX78376 | Canola | plastid | 30.78 | 12.58 |
| CDX96996 | Canola | nucleus | 30.92 | 12.55 |
Protein Annotations
| Gene3D:1.20.120.1080 | MapMan:16.4.7.3.3 | Gene3D:3.40.50.300 | GO:A0A078CHD1 | EnsemblPlants:CDX76626 | ProteinID:CDX76626 |
| ProteinID:CDX76626.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 |
| EnsemblPlantsGene:GSBRNA2T00127090001 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF193 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 |
| SUPFAM:SSF52540 | UniParc:UPI0004EEC0DD | SEG:seg | : | : | : |
Description
BnaC08g32120D
Coordinates
chrLK031808:-:239747..242890
Molecular Weight (calculated)
81764.5 Da
IEP (calculated)
7.705
GRAVY (calculated)
-0.385
Length
718 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTERKRKVT LFDVMDNPSA PKVAKFNGLG DGGINKWNGK PYSAKYYEIL EKRRTLPVWL QKEEFLRTLK NNQTIILVGE TGSGKTTQIP QFVIDAVDAE
101: SSDRKWLVAC TQPRRVAAMS VSRRVADEMD VAIGEEVGYS IRFEDCSSPR TVLKYLTDGM LLREAMADPL LERYKVIILD EAHERTLATD VLFGLLKEVL
201: RNRPDLKLVV MSATLEAEKF QEYFSGAPLM KVPGRLHPVE IFYTQEPERD YLEAAIRTVV QIHMCEPPGD ILVFLTGEEE IEDACRKINK EVSNLGDQVG
301: PVKVVPLYST LPPAMQQKIF DPAPEPVTKG GPPGRKIVVS TNIAETSLTI DGIVYVIDPG FAKQKVYNPR IRVESLLVSP ISKASAHQRS GRAGRTRPGK
401: CFRLYTEKSF NNDLQPQTYP EILRSNLANT VLTLKKLGID DLVHFDFMDP PAPETLMRAL EVLNYLGALD DEGNLTRTGE IMSEFPLDPQ MAKMLIVSPE
501: FNCSNEILSV SAMLSVPNCF LRPREYQKAA DEAKAKFGHI DGDHLTLLNV YHAFKQNNED PNWCYENYIN NRAMKSADNV RQQLVRIMSR FNLKICSTDF
601: NSRDYYINIR KAMLAGYFMQ VAHLERAGSY LTVKDNQVVH LHPSNCLDHK PEWVIYNEYV LTTRNFIRTV TDIRGEWLVD VAPHYYDLTN FPNCEAKRVL
701: EKLYKKRERE KADSKNRK
101: SSDRKWLVAC TQPRRVAAMS VSRRVADEMD VAIGEEVGYS IRFEDCSSPR TVLKYLTDGM LLREAMADPL LERYKVIILD EAHERTLATD VLFGLLKEVL
201: RNRPDLKLVV MSATLEAEKF QEYFSGAPLM KVPGRLHPVE IFYTQEPERD YLEAAIRTVV QIHMCEPPGD ILVFLTGEEE IEDACRKINK EVSNLGDQVG
301: PVKVVPLYST LPPAMQQKIF DPAPEPVTKG GPPGRKIVVS TNIAETSLTI DGIVYVIDPG FAKQKVYNPR IRVESLLVSP ISKASAHQRS GRAGRTRPGK
401: CFRLYTEKSF NNDLQPQTYP EILRSNLANT VLTLKKLGID DLVHFDFMDP PAPETLMRAL EVLNYLGALD DEGNLTRTGE IMSEFPLDPQ MAKMLIVSPE
501: FNCSNEILSV SAMLSVPNCF LRPREYQKAA DEAKAKFGHI DGDHLTLLNV YHAFKQNNED PNWCYENYIN NRAMKSADNV RQQLVRIMSR FNLKICSTDF
601: NSRDYYINIR KAMLAGYFMQ VAHLERAGSY LTVKDNQVVH LHPSNCLDHK PEWVIYNEYV LTTRNFIRTV TDIRGEWLVD VAPHYYDLTN FPNCEAKRVL
701: EKLYKKRERE KADSKNRK
001: MGTERKRKIS LFDVMDDPSA PAKNAKTSGL PDGGINSLIN KWNGKPYSQR YYDILEKRRT LPVWLQKEEF LKTLNNNQTL ILVGETGSGK TTQIPQFVID
101: AVDAETSDKR RKWLVGCTQP RRVAAMSVSR RVAEEMDVTI GEEVGYSIRF EDCSSPRTVL KYLTDGMLLR EAMADPLLER YKVIILDEAH ERTLATDVLF
201: GLLKEVLKNR PDLKLVVMSA TLEAEKFQDY FSGAPLMKVP GRLHPVEIFY TQEPERDYLE AAIRTVVQIH MCEPPGDILV FLTGEEEIED ACRKINKEVG
301: NLGDQVGPIK VVPLYSTLPP AMQQKIFDPA PEPVTEGGPP GRKIVVSTNI AETSLTIDGI VYVIDPGFAK QKVYNPRIRV ESLLVSPISK ASAHQRSGRA
401: GRTRPGKCFR LYTEKSFNND LQPQTYPEIL RSNLANTVLT LKKLGIDDLV HFDFMDPPAP ETLMRALEVL NYLGALDDDG NLTKTGEIMS EFPLDPQMAK
501: MLIVSPEFNC SNEILSVSAM LSVPNCFIRP REAQKAADEA KARFGHIEGD HLTLLNVYHA FKQNNEDPNW CYENFINNRA MKSADNVRQQ LVRIMSRFNL
601: KMCSTDFNSR DYYINIRKAM LAGYFMQVAH LERTGHYLTV KDNQVVHLHP SNCLDHKPEW VIYNEYVLTS RNFIRTVTDI RGEWLVDVAS HYYDLSNFPN
701: CEAKRVIEKL YKKREREKEE SKKNRK
101: AVDAETSDKR RKWLVGCTQP RRVAAMSVSR RVAEEMDVTI GEEVGYSIRF EDCSSPRTVL KYLTDGMLLR EAMADPLLER YKVIILDEAH ERTLATDVLF
201: GLLKEVLKNR PDLKLVVMSA TLEAEKFQDY FSGAPLMKVP GRLHPVEIFY TQEPERDYLE AAIRTVVQIH MCEPPGDILV FLTGEEEIED ACRKINKEVG
301: NLGDQVGPIK VVPLYSTLPP AMQQKIFDPA PEPVTEGGPP GRKIVVSTNI AETSLTIDGI VYVIDPGFAK QKVYNPRIRV ESLLVSPISK ASAHQRSGRA
401: GRTRPGKCFR LYTEKSFNND LQPQTYPEIL RSNLANTVLT LKKLGIDDLV HFDFMDPPAP ETLMRALEVL NYLGALDDDG NLTKTGEIMS EFPLDPQMAK
501: MLIVSPEFNC SNEILSVSAM LSVPNCFIRP REAQKAADEA KARFGHIEGD HLTLLNVYHA FKQNNEDPNW CYENFINNRA MKSADNVRQQ LVRIMSRFNL
601: KMCSTDFNSR DYYINIRKAM LAGYFMQVAH LERTGHYLTV KDNQVVHLHP SNCLDHKPEW VIYNEYVLTS RNFIRTVTDI RGEWLVDVAS HYYDLSNFPN
701: CEAKRVIEKL YKKREREKEE SKKNRK
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.