Factsheet for PGSC0003DMT400023284

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g079250.2.1	Tomato	nucleus	99.72	99.72
KRH69191	Soybean	nucleus	92.25	92.38
KRH68290	Soybean	nucleus	91.42	91.81
KRG96553	Soybean	nucleus	91.29	91.54
VIT_07s0005g01770.t01	Wine grape	nucleus	90.04	89.42
CDX76626	Canola	nucleus	87.14	87.74
CDX95715	Canola	cytosol	87.83	87.59
Bra000445.1-P	Field mustard	cytosol	87.55	87.55
CDX83337	Canola	cytosol	87.55	87.55
CDY11413	Canola	nucleus	86.86	87.47
Bra007671.1-P	Field mustard	nucleus	86.86	87.47
KXG39505	Sorghum	cytosol	86.72	86.84
TraesCS4A01G124200.2	Wheat	cytosol	86.31	86.79
HORVU4Hr1G052730.3	Barley	cytosol	86.31	86.55
TraesCS4D01G181700.1	Wheat	cytosol	86.31	86.55
TraesCS4B01G180200.1	Wheat	cytosol	86.17	86.41
Zm00001d028923_P002	Maize	nucleus	86.03	86.27
KRH31768	Soybean	cytosol, nucleus	67.91	85.1
Os03t0314100-01	Rice	cytosol, nucleus, plastid	63.62	81.56
Zm00001d047601_P006	Maize	nucleus	85.89	80.34
Bra003744.1-P	Field mustard	nucleus	74.41	80.3
CDY68405	Canola	nucleus	74.0	79.85
GSMUA_Achr1P18470_001	Banana	cytosol	38.87	78.93
AT5G14900.1	Thale cress	cytosol	30.98	74.42
CDX74061	Canola	cytosol	28.49	64.17
Bra001237.1-P	Field mustard	cytosol	37.76	63.19
CDX74059	Canola	nucleus	22.41	61.36
Bra001238.1-P	Field mustard	cytosol, mitochondrion	21.72	59.47
PGSC0003DMT400038620	Potato	cytosol, nucleus, plastid	25.73	53.3
PGSC0003DMT400046188	Potato	nucleus	43.02	45.07
PGSC0003DMT400084916	Potato	nucleus	48.82	44.07
PGSC0003DMT400005723	Potato	nucleus	48.55	42.7
PGSC0003DMT400009842	Potato	mitochondrion	20.89	40.05
PGSC0003DMT400063370	Potato	nucleus	49.1	33.81
PGSC0003DMT400039875	Potato	nucleus	39.7	31.09
PGSC0003DMT400056692	Potato	nucleus	47.86	30.32
PGSC0003DMT400055058	Potato	nucleus	33.06	27.99
PGSC0003DMT400018531	Potato	nucleus	41.22	23.19
PGSC0003DMT400055091	Potato	mitochondrion	32.23	20.02
PGSC0003DMT400000297	Potato	nucleus	32.5	17.59
PGSC0003DMT400041805	Potato	nucleus	30.43	13.56
PGSC0003DMT400060759	Potato	nucleus	29.74	12.43
PGSC0003DMT400041647	Potato	cytosol	0.83	1.63
PGSC0003DMT400063366	Potato	plastid	0.0	0.0

Protein Annotations

Gene3D:1.20.120.1080	EntrezGene:102594667	MapMan:16.4.7.3.3	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	ncoils:Coil
InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	UniProt:M1AI36	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717
PFAM:PF13401	EnsemblPlantsGene:PGSC0003DMG400009019	PGSC:PGSC0003DMG400009019	EnsemblPlants:PGSC0003DMT400023284	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR18934	PANTHER:PTHR18934:SF193	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540
UniParc:UPI000296D1FF	RefSeq:XP_006349171.1	SEG:seg	:	:	:

Description

ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400009019]

Coordinates

chr1:+:62927629..62933469

Molecular Weight (calculated)

82221.1 Da

IEP (calculated)

7.558

GRAVY (calculated)

-0.389

Length

723 amino acids

Sequence
(BLAST)

001: MGTERKRKVS LFDVVDDSAA KKLNGGLNGG NSMTASINKW NGKPYSQRFY DILEKRKTLP VWHQKEEFLQ ALKSNQTLIL VGETGSGKTT QIPQFVLDAV
101: EVETADKRRK YMIGCTQPRR VAAMSVSRRV AEEMDVVIGE EVGYSIRFED CTSARTVLKY LTDGMLLREA MADPLLERYK VIILDEAHER TLATDVLFGL
201: LKEVLKNRPD LKLVVMSATL EAEKFQGYFF GAPLMKVPGR LHPVEIFYTQ DPERDYLEAA IRTVVQIHTC EPPGDILVFL TGEEEIEDAC RKITKEIGNM
301: GDQVGPVKPV PLYSTLPPAM QQKIFEPAPP PVVEGGPPGR KIVVSTNIAE TSLTIDGIVY VIDPGFAKQK VYNPRVRVES LLVSPISKAS AHQRSGRAGR
401: TQPGKCFRLY TEKSFHNDLQ PQTYPEILRS NLANTVLTLK KLGIDDLVHF DFMDPPAPET LMRALEVLNY LGALDDDGNM TRLGEIMSEF PLDPQMGKML
501: VVSPEFNCSN EILSISAMLS VPNCFVRPRE AQKAADEAKN RFGHIDGDHL TLLNVYHAYK QNQEDPQWCY ENFINQRALK SADNVRQQLS RIMARFNLKL
601: CSTDFNSREY YVNIRKAMLA GYFMQVAHLE RTGHYLTVKD NQVVHLHPSN CLDHKPEWVI YNEYVLTSRN FIRTVTDIRG EWLVDIAPHY YDLANFPQCE
701: AKRVLERLYK KREREKDESK SKK

Best Arabidopsis Sequence Match ( AT3G62310.1 )
(BLAST)

001: MGTERKRKIS LFDVMDDPSA PAKNAKTSGL PDGGINSLIN KWNGKPYSQR YYDILEKRRT LPVWLQKEEF LKTLNNNQTL ILVGETGSGK TTQIPQFVID
101: AVDAETSDKR RKWLVGCTQP RRVAAMSVSR RVAEEMDVTI GEEVGYSIRF EDCSSPRTVL KYLTDGMLLR EAMADPLLER YKVIILDEAH ERTLATDVLF
201: GLLKEVLKNR PDLKLVVMSA TLEAEKFQDY FSGAPLMKVP GRLHPVEIFY TQEPERDYLE AAIRTVVQIH MCEPPGDILV FLTGEEEIED ACRKINKEVG
301: NLGDQVGPIK VVPLYSTLPP AMQQKIFDPA PEPVTEGGPP GRKIVVSTNI AETSLTIDGI VYVIDPGFAK QKVYNPRIRV ESLLVSPISK ASAHQRSGRA
401: GRTRPGKCFR LYTEKSFNND LQPQTYPEIL RSNLANTVLT LKKLGIDDLV HFDFMDPPAP ETLMRALEVL NYLGALDDDG NLTKTGEIMS EFPLDPQMAK
501: MLIVSPEFNC SNEILSVSAM LSVPNCFIRP REAQKAADEA KARFGHIEGD HLTLLNVYHA FKQNNEDPNW CYENFINNRA MKSADNVRQQ LVRIMSRFNL
601: KMCSTDFNSR DYYINIRKAM LAGYFMQVAH LERTGHYLTV KDNQVVHLHP SNCLDHKPEW VIYNEYVLTS RNFIRTVTDI RGEWLVDVAS HYYDLSNFPN
701: CEAKRVIEKL YKKREREKEE SKKNRK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZQ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.