CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68290	Soybean	nucleus	95.71	95.97
KRG96553	Soybean	nucleus	95.57	95.7
VIT_07s0005g01770.t01	Wine grape	nucleus	93.35	92.58
PGSC0003DMT400023284	Potato	nucleus	92.38	92.25
Solyc01g079250.2.1	Tomato	nucleus	92.24	92.12
KRH31768	Soybean	cytosol, nucleus	72.3	90.47
CDX95715	Canola	cytosol	89.34	88.97
CDX76626	Canola	nucleus	88.37	88.86
CDX83337	Canola	cytosol	88.78	88.66
Bra000445.1-P	Field mustard	cytosol	88.78	88.66
CDY11413	Canola	nucleus	87.95	88.44
Bra007671.1-P	Field mustard	nucleus	87.95	88.44
KXG39505	Sorghum	cytosol	88.37	88.37
Zm00001d028923_P002	Maize	nucleus	88.09	88.21
TraesCS4A01G124200.2	Wheat	cytosol	87.81	88.18
TraesCS4D01G181700.1	Wheat	cytosol	87.95	88.07
TraesCS4B01G180200.1	Wheat	cytosol	87.81	87.93
HORVU4Hr1G052730.3	Barley	cytosol	87.81	87.93
Os03t0314100-01	Rice	cytosol, nucleus, plastid	64.96	83.16
Zm00001d047601_P006	Maize	nucleus	87.26	81.5
Bra003744.1-P	Field mustard	nucleus	75.35	81.19
CDY68405	Canola	nucleus	74.65	80.45
GSMUA_Achr1P18470_001	Banana	cytosol	39.61	80.34
AT5G14900.1	Thale cress	cytosol	31.3	75.08
CDX74061	Canola	cytosol	28.67	64.49
Bra001237.1-P	Field mustard	cytosol	37.95	63.43
CDX74059	Canola	nucleus	22.85	62.5
Bra001238.1-P	Field mustard	cytosol, mitochondrion	22.16	60.61
KRH21325	Soybean	nucleus	40.44	43.84
KRH70930	Soybean	nucleus	40.72	41.7
KRH69386	Soybean	cytosol	15.1	41.44
KRH75071	Soybean	nucleus	40.3	41.28
KRH12910	Soybean	cytosol, nucleus	41.41	40.13
KRH58751	Soybean	nucleus	38.23	39.6
KRH40933	Soybean	cytosol	30.89	36.62
KRG97372	Soybean	nucleus	48.89	36.5
KRH54662	Soybean	nucleus	49.45	34.13
KRH74752	Soybean	nucleus	46.95	32.85
KRH05918	Soybean	nucleus	50.55	30.49
KRH17401	Soybean	nucleus	50.55	30.34
KRH72171	Soybean	nucleus	33.8	27.11
KRH32860	Soybean	mitochondrion, nucleus, plastid	33.8	23.69
KRH23170	Soybean	nucleus	41.0	23.29
KRH10165	Soybean	nucleus	41.0	23.27
KRH38164	Soybean	nucleus	33.66	22.05
KRG90929	Soybean	plastid	32.96	20.9
KRH41772	Soybean	plastid	33.52	20.56
KRH60477	Soybean	plastid	33.38	20.42
KRH44757	Soybean	plastid	31.58	19.64
KRH13104	Soybean	mitochondrion	11.36	19.16
KRH65271	Soybean	nucleus	34.9	19.06
KRH76262	Soybean	nucleus	34.76	19.0
KRH73592	Soybean	nucleus	28.39	17.64
KRH14525	Soybean	nucleus	27.98	17.35
KRH01863	Soybean	nucleus	30.06	15.09
KRG97543	Soybean	nucleus, plastid	30.75	12.84
KRH31333	Soybean	nucleus, plastid	30.06	12.5

Protein Annotations

Gene3D:1.20.120.1080	EntrezGene:100819776	MapMan:16.4.7.3.3	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	EMBL:ACUP02000689
ncoils:Coil	InterPro:DUF1605	EnsemblPlantsGene:GLYMA_02G010500	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	UniProt:I1JBE2	InterPro:IPR001650	InterPro:IPR014001	EnsemblPlants:KRH69191	ProteinID:KRH69191
ProteinID:KRH69191.1	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	PFAM:PF13401
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF193	SMART:SM00487	SMART:SM00490
SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI0002337737	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:997109..1000570

Molecular Weight (calculated)

82110.9 Da

IEP (calculated)

7.747

GRAVY (calculated)

-0.387

Length

722 amino acids

Sequence
(BLAST)

001: MGTERKRKVS LFDVVDDAAA KMSKSNGGAV AANNLINRWN GKPYSQRYHD ILEKRKTLPV WHQKEEFLQA LKDNQTLILV GETGSGKTTQ IPQFVLEAVD
101: IETTDKRRKM MIACTQPRRV AAMSVSRRVA EEMDVSIGEE VGYSIRFEDC SSARTVLKYL TDGMLLREAM TDPLLERYKV IILDEAHERT LATDVLFGLL
201: KEVLRNRPDL KLVVMSATLE AEKFQGYFSG APLMKVPGRL HPVEIFYTQD PERDYLEAAI RTVVQIHMCE PSGDILVFLT GEEEIEDACR KINKEISNMG
301: DQVGPVKVVP LYSTLPPAMQ QKIFEPAPPP VKEGGPPGRK IVVSTNIAET SLTIDGIVYV IDPGFAKQKV YNPRVRVESL LVSPISKASA HQRSGRAGRT
401: QPGKCFRLYT EKSFNNDLQP QTYPEILRSN LANTVLTLKK LGIDDLVHFD FMDPPAPETL MRALEVLNYL GALDDDGNLT KLGQIMSEFP LDPQMSKMLV
501: VSPEFNCSNE ILSVSAMLSV PNCFVRPREA QKAADEAKAR FGHIDGDHLT LLNVYHAYKQ NNEDPSWCYD NFVNHRALKS ADNVRQQLVR IMARFNLKLC
601: STDFNSRDYY VNIRKAMLAG YFMQVAHLER TGHYLTVKDN QVVHLHPSNC LDHKPEWVIY NEYVLTSRNF IRTVTDIRGE WLVDVAPHYY DLSNFPQCEA
701: KRVLERLYKK REKEKEEARS RK

Best Arabidopsis Sequence Match ( AT3G62310.1 )
(BLAST)

001: MGTERKRKIS LFDVMDDPSA PAKNAKTSGL PDGGINSLIN KWNGKPYSQR YYDILEKRRT LPVWLQKEEF LKTLNNNQTL ILVGETGSGK TTQIPQFVID
101: AVDAETSDKR RKWLVGCTQP RRVAAMSVSR RVAEEMDVTI GEEVGYSIRF EDCSSPRTVL KYLTDGMLLR EAMADPLLER YKVIILDEAH ERTLATDVLF
201: GLLKEVLKNR PDLKLVVMSA TLEAEKFQDY FSGAPLMKVP GRLHPVEIFY TQEPERDYLE AAIRTVVQIH MCEPPGDILV FLTGEEEIED ACRKINKEVG
301: NLGDQVGPIK VVPLYSTLPP AMQQKIFDPA PEPVTEGGPP GRKIVVSTNI AETSLTIDGI VYVIDPGFAK QKVYNPRIRV ESLLVSPISK ASAHQRSGRA
401: GRTRPGKCFR LYTEKSFNND LQPQTYPEIL RSNLANTVLT LKKLGIDDLV HFDFMDPPAP ETLMRALEVL NYLGALDDDG NLTKTGEIMS EFPLDPQMAK
501: MLIVSPEFNC SNEILSVSAM LSVPNCFIRP REAQKAADEA KARFGHIEGD HLTLLNVYHA FKQNNEDPNW CYENFINNRA MKSADNVRQQ LVRIMSRFNL
601: KMCSTDFNSR DYYINIRKAM LAGYFMQVAH LERTGHYLTV KDNQVVHLHP SNCLDHKPEW VIYNEYVLTS RNFIRTVTDI RGEWLVDVAS HYYDLSNFPN
701: CEAKRVIEKL YKKREREKEE SKKNRK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZQ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.