CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40933	Soybean	cytosol	56.31	96.72
Os08t0335000-00	Rice	cytosol, nucleus	30.78	87.74
Solyc03g115390.2.1	Tomato	nucleus	75.53	86.91
VIT_17s0000g06950.t01	Wine grape	nucleus	85.85	85.2
KRH12910	Soybean	cytosol, nucleus	60.52	84.97
KRH69386	Soybean	cytosol	20.84	82.89
PGSC0003DMT400063370	Potato	nucleus	82.6	82.29
KRH74752	Soybean	nucleus	81.17	82.27
GSMUA_Achr4P23370_001	Banana	nucleus	57.74	80.53
Zm00001d049980_P001	Maize	plasma membrane	53.35	79.94
EES02741	Sorghum	nucleus	76.48	76.48
KXG30390	Sorghum	nucleus	76.39	76.39
TraesCS4D01G362600.1	Wheat	nucleus	74.67	74.67
TraesCS4B01G374800.1	Wheat	nucleus	74.67	74.67
HORVU4Hr1G088270.17	Barley	mitochondrion	72.28	70.0
KRH69191	Soybean	nucleus	34.13	49.45
KRH68290	Soybean	nucleus	33.94	49.31
KRG96553	Soybean	nucleus	33.94	49.24
KRH31768	Soybean	cytosol, nucleus	26.0	47.14
KRH75071	Soybean	nucleus	30.5	45.25
KRH70930	Soybean	nucleus	30.31	44.96
KRH21325	Soybean	nucleus	27.92	43.84
KRH58751	Soybean	nucleus	27.44	41.18
KRG97372	Soybean	nucleus	37.76	40.85
KRH05918	Soybean	nucleus	40.73	35.59
KRH17401	Soybean	nucleus	40.92	35.58
KRH23170	Soybean	nucleus	38.05	31.31
KRH10165	Soybean	nucleus	37.67	30.97
KRH72171	Soybean	nucleus	23.8	27.67
KRH32860	Soybean	mitochondrion, nucleus, plastid	24.95	25.34
KRH13104	Soybean	mitochondrion	10.04	24.53
KRH38164	Soybean	nucleus	23.14	21.96
KRG90929	Soybean	plastid	23.52	21.6
KRH44757	Soybean	plastid	23.71	21.36
KRH60477	Soybean	plastid	23.9	21.19
KRH76262	Soybean	nucleus	26.67	21.12
KRH41772	Soybean	plastid	23.71	21.07
KRH65271	Soybean	nucleus	26.58	21.03
KRH73592	Soybean	nucleus	20.27	18.24
KRH14525	Soybean	nucleus	20.08	18.04
KRH01863	Soybean	nucleus	22.85	16.62
KRH31333	Soybean	nucleus, plastid	23.42	14.11
KRG97543	Soybean	nucleus, plastid	23.33	14.11

Protein Annotations

Gene3D:1.20.120.1080	EntrezGene:100809559	MapMan:16.4.7.1.5	Gene3D:3.40.50.300	EMBL:ACUP02003560	ncoils:Coil
InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	EnsemblPlantsGene:GLYMA_06G201700	GO:GO:0000166	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
UniProt:K7KW48	EnsemblPlants:KRH54662	ProteinID:KRH54662	ProteinID:KRH54662.1	InterPro:P-loop_NTPase	PFAM:PF00271
PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR18934	PANTHER:PTHR18934:SF117	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM00847
SUPFAM:SSF52540	UniParc:UPI0002960009	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:18577560..18617551

Molecular Weight (calculated)

119734.0 Da

IEP (calculated)

5.947

GRAVY (calculated)

-0.665

Length

1046 amino acids

Sequence
(BLAST)

0001: MGSDDNLKTW VSDKLMSLLG YSQPTVVQYM IGLSKQATSP ADLVGKLVEF GISSMDTHAF AEEIYSRVPR RSSGINQYQK QEREAAMLAR KQKTYSILKA
0101: DDDSDDDYVD KSSVTTASSR SSDKHKKRFR KKTEVQDDQD DEVILRKEKE RQVKRRTSPD EDSDSESEEE RLKDQREKEE LEQHMRERDA AGTRKLTEQK
0201: LTRKEEEEAI RRSKAAEQDD IQSLRKVSRQ EYLKKREEKK LEELRDDIED EQYLFEGVKL SEAEYRELRY KKEIYELVKK RSEEADNANE YRMPEAYDQE
0301: GGVNQEKRFS VAMQRYRDLN AEDKMNPFAE QEAWEEHQIG KATLKFGSKN KKQVSDDYQY VFEDQIDFIK ASVMEGDKFD YEEMEDSHEK SKAKSAFEAL
0401: QEERKKLPMF PYRDELLEAV HNHQVLVIVG ETGSGKTTQI PQYLHEAGYT KRGMIACTQP RRVAAMSVAA RVSQEMGVKL GHEVGYSIRF EDCTSEKTIL
0501: KYMTDGMLLR EFLGEPDLAS YSVVMVDEAH ERTLSTDILF GLVKDIARFR PDLKLLISSA TLDAEKFSDY FDSAPIFRIP GRRYPVEISY TKAPEADYLD
0601: AAIVTSLQIH VTQPPGDILV FLTGQEEIET AEEILKHRTR GLGTKISELI ICPIYANLPT ELQAKIFEPT PEGARKVVLA TNIAETSLTI DGIKYVIDPG
0701: FCKMKSYNPR TGMESLLVTP ISKASANQRA GRSGRTGPGK CFRLYTAYNY HNDLDDNTVP EIQRTNLANV VLTLKSLGIH DLLNFDFMDP PPAEALLKAL
0801: ELLFALSALN KLGELTKVGR RMAEFPLDPM LSKMIVASEN YKCSDDIISI AAMLSVGNSI FYRPKDKQVH ADNARLNFHT GNVGDHMALL KVYNSWKETN
0901: YSTQWCYENY IQVRSMKRAR DIRDQLAGLL ERVEIELTSN ANDLDAIKKS ITSGFFPHSA RLQKNGSYRT VKHSQTVHIH PSSGLAQVLP RWVVYHELVL
1001: TTKEYMRQVT ELKPEWLVEI APHYYQLKDV EDSYSKKMPR GAGLPS

Best Arabidopsis Sequence Match ( AT1G32490.1 )
(BLAST)

0001: MASNDLKTWV SDKLMMLLGY SQAAVVNYLI AMAKKTKSPT ELVGELVDYG FSSSGDTRSF AEEIFARVPR KTAGVNLYQK HEAEAAMLVR KQKTYALLDA
0101: DDDEDEVVVE KKSSVSESRK SDKGKKRFRK KSGQSDESDG EVAVREDSRH VRRKVSEEDD GSESEEERVR DQKEREELEQ HLKDRDTART RKLTEQTLSK
0201: KEKEEAVRRA NALEKDDLYS LRKVSRQEYL KKREQKKLDE LRDEIEDEQY LFGGEKLTET ELREFRYKKE LYDLVKKRTQ DEDNVEEYRI PDAYDQEGGV
0301: DQEKRFSVAV QRYRDLDSTE KMNPFAEQEA WEDHQIGKAT LKFGAKNKQA SDDYQFVFED QINFIKESVM AGENYEDAMD AKQKSQDLAE KTALEELQEV
0401: RRSLPIYTYR DQLLKAVEEH QVLVIVGDTG SGKTTQIPQY LHEAGYTKRG KVGCTQPRRV AAMSVAARVA QEMGVKLGHE VGYSIRFEDC TSDKTVLKYM
0501: TDGMLLRELL GEPDLASYSV VIVDEAHERT LSTDILFGLV KDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINYTSA PEADYMDAAI
0601: VTILTIHVRE PLGDILVFFT GQEEIETAEE ILKHRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK
0701: MKSYNPRTGM ESLLITPISK ASATQRAGRA GRTSPGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKSLELL
0801: FALGALNKLG ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGGSIFYR PKDKQVHADN ARMNFHTGNV GDHIALLKVY SSWKETNFST
0901: QWCYENYIQV RSMKRARDIR DQLEGLLERV EIDISSNLNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK
1001: EYMRQVTELK PEWLIELAPH YYQLKDVEDA ASKKMPKGAG KAAM

Arabidopsis Description

ESP3ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.