Factsheet for VIT_17s0000g06950.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0335000-00	Rice	cytosol, nucleus	30.46	87.47
Solyc03g115390.2.1	Tomato	nucleus	74.48	86.36
KRH54662	Soybean	nucleus	85.2	85.85
KRH40933	Soybean	cytosol	48.39	83.74
PGSC0003DMT400063370	Potato	nucleus	82.07	82.38
GSMUA_Achr4P23370_001	Banana	nucleus	57.4	80.67
KRH69386	Soybean	cytosol	19.92	79.85
Zm00001d049980_P001	Maize	plasma membrane	52.66	79.51
KRH12910	Soybean	cytosol, nucleus	54.27	76.78
KRH74752	Soybean	nucleus	74.67	76.26
KXG30390	Sorghum	nucleus	74.76	75.33
TraesCS4D01G362600.1	Wheat	nucleus	74.76	75.33
TraesCS4B01G374800.1	Wheat	nucleus	74.57	75.14
EES02741	Sorghum	nucleus	74.38	74.95
HORVU4Hr1G088270.17	Barley	mitochondrion	72.01	70.28
VIT_07s0005g01770.t01	Wine grape	nucleus	33.3	48.21
VIT_10s0003g00810.t01	Wine grape	nucleus	29.51	44.81
VIT_01s0137g00640.t01	Wine grape	nucleus	29.41	42.7
VIT_01s0010g02780.t01	Wine grape	nucleus	24.57	40.47
VIT_01s0010g02920.t01	Wine grape	nucleus	32.73	39.43
VIT_08s0056g00470.t01	Wine grape	nucleus	40.99	36.77
VIT_08s0032g01230.t01	Wine grape	nucleus, plastid	23.72	24.39
VIT_17s0000g03030.t01	Wine grape	nucleus	22.77	22.71
VIT_01s0011g04360.t01	Wine grape	plastid	23.72	21.17
VIT_07s0005g00860.t01	Wine grape	nucleus	26.19	20.89
VIT_12s0028g01050.t01	Wine grape	nucleus	21.06	18.03
VIT_12s0035g00800.t01	Wine grape	nucleus	21.82	16.8
VIT_07s0191g00210.t01	Wine grape	nucleus	20.59	12.49

Protein Annotations

Gene3D:1.20.120.1080	EntrezGene:100244993	wikigene:100244993	MapMan:16.4.7.1.5	Gene3D:3.40.50.300	ProteinID:CCB43050
ProteinID:CCB43050.1	ncoils:Coil	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	UniProt:F6GT26	EMBL:FN594950
GO:GO:0000166	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EntrezGene:LOC100244993	wikigene:LOC100244993	InterPro:P-loop_NTPase
PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR18934	PANTHER:PTHR18934:SF117	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SMART:SM00847	SUPFAM:SSF52540	TIGR:TC67974	UniParc:UPI00021094CB	ArrayExpress:VIT_17s0000g06950	EnsemblPlantsGene:VIT_17s0000g06950
EnsemblPlants:VIT_17s0000g06950.t01	unigene:Vvi.12692	RefSeq:XP_002284415	RefSeq:XP_002284415.1	SEG:seg	:

Description

No Description!

Coordinates

chr17:+:7636880..7658792

Molecular Weight (calculated)

119779.0 Da

IEP (calculated)

5.244

GRAVY (calculated)

-0.617

Length

1054 amino acids

Sequence
(BLAST)

0001: MGSESNLKVW VSDKLMSLLG YSQPTLVQYV VGLAKQASSP ADVVGKLVEF GLSASSETRS FAEEIFSKVP HKASGLNVYQ KQEREAAMLV RKQKTYAILD
0101: ADDSDEDGGG IVDNRSSTAA PAASQSEKAD THKKRFRKKT ENVEDDADDE VIARAEESRQ VKRRTSQDED DDSELEEESL RDRREREQLE QNIRQRDAAG
0201: TRKLTEQKLS RKEEEEAIRR SNAMEEDDIS ALRKVSRQEY LKKREQKKLE ELRDDIEDEQ YLFDGVKLTE AEQRELRYKR EIYDLVKKRS EETDDINEYR
0301: MPDAYDQEGG VNQEKRFSVA LQRYRDSSAN DKMNPFAEQE AWEEHQIGKA TLKFGSKDKN QKSDDYQLVF EDQIEFIKAS VMDGDKFEDG LFAESHDDSV
0401: AKSELEKLQE DRKMLPIYPY RDELLKAVDD HQILVIVGET GSGKTTQIPQ YLHESGYTKR GKVGCTQPRR VAAMSVAARV SQEMGVKLGH EVGYSIRFED
0501: CTSEKTVLKY MTDGMLLREF LGEPDLASYS VVMVDEAHER TLSTDILFGL DIARFRPDLK LLISSATLDA EKFSDYFDSA PIFKIPGRRY PVEIHYTKAP
0601: EADYLDAAIV TALQIHVTQP PGDILVFLTG QEEIETAEEI MKHRTRGLGT KIAELIICPI YANLPTELQA NIFEPTPEGA RKVVLATNIA ETSLTIDGIK
0701: YVIDPGFCKM KSYNPRTGME SLLVNPISKA SAMQRAGRSG RTGPGKCFRL YTAYNYYNDL EDNTVPEIQR TNLANVVLSL KSLGIHDLLN FDFMDPPPAE
0801: ALLKALELLY ALSALNRLGE LTKVGRRMAE FPLDPMLSKM IVAADNYKCS DEIISIAAML SVGNSIFYRP KDKQVHADNA RMNFHTGNVG DHIALLKVYS
0901: SWKETNYSTQ WCYENYIQVR SMKRARDVRD QLEGLLERVE IELASNPNDL DAIKKSITAG FFPHSARLQK NGSYRTVKHP QTVHIHPSSG LAQVLPRWVI
1001: YHELVLTTKE YMRQVTELKP EWLVEIAPHF YQLKDVEDPG SKKMPRTEGR AVKD

Best Arabidopsis Sequence Match ( AT1G32490.1 )
(BLAST)

0001: MASNDLKTWV SDKLMMLLGY SQAAVVNYLI AMAKKTKSPT ELVGELVDYG FSSSGDTRSF AEEIFARVPR KTAGVNLYQK HEAEAAMLVR KQKTYALLDA
0101: DDDEDEVVVE KKSSVSESRK SDKGKKRFRK KSGQSDESDG EVAVREDSRH VRRKVSEEDD GSESEEERVR DQKEREELEQ HLKDRDTART RKLTEQTLSK
0201: KEKEEAVRRA NALEKDDLYS LRKVSRQEYL KKREQKKLDE LRDEIEDEQY LFGGEKLTET ELREFRYKKE LYDLVKKRTQ DEDNVEEYRI PDAYDQEGGV
0301: DQEKRFSVAV QRYRDLDSTE KMNPFAEQEA WEDHQIGKAT LKFGAKNKQA SDDYQFVFED QINFIKESVM AGENYEDAMD AKQKSQDLAE KTALEELQEV
0401: RRSLPIYTYR DQLLKAVEEH QVLVIVGDTG SGKTTQIPQY LHEAGYTKRG KVGCTQPRRV AAMSVAARVA QEMGVKLGHE VGYSIRFEDC TSDKTVLKYM
0501: TDGMLLRELL GEPDLASYSV VIVDEAHERT LSTDILFGLV KDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINYTSA PEADYMDAAI
0601: VTILTIHVRE PLGDILVFFT GQEEIETAEE ILKHRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK
0701: MKSYNPRTGM ESLLITPISK ASATQRAGRA GRTSPGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKSLELL
0801: FALGALNKLG ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGGSIFYR PKDKQVHADN ARMNFHTGNV GDHIALLKVY SSWKETNFST
0901: QWCYENYIQV RSMKRARDIR DQLEGLLERV EIDISSNLNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK
1001: EYMRQVTELK PEWLIELAPH YYQLKDVEDA ASKKMPKGAG KAAM

Arabidopsis Description

ESP3ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.