Factsheet for VIT_01s0010g02780.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58751	Soybean	nucleus	78.75	72.31
Solyc05g015040.2.1	Tomato	nucleus	78.91	72.14
PGSC0003DMT400038620	Potato	cytosol, nucleus, plastid	38.59	70.77
AT1G27900.1	Thale cress	nucleus	76.25	69.71
CDY11762	Canola	nucleus	76.56	69.6
Bra010915.1-P	Field mustard	nucleus	76.41	69.36
CDX90112	Canola	nucleus	76.41	69.36
TraesCS4B01G075500.1	Wheat	nucleus	74.22	67.38
TraesCS4D01G074200.1	Wheat	nucleus	74.22	67.38
Os11t0310800-01	Rice	nucleus	74.38	67.23
EER87951	Sorghum	nucleus, plastid	73.75	66.95
TraesCS4A01G239500.2	Wheat	nucleus	73.75	66.95
Zm00001d045147_P015	Maize	nucleus	73.12	66.29
GSMUA_Achr2P20940_001	Banana	nucleus	60.78	57.97
VIT_07s0005g01770.t01	Wine grape	nucleus	38.12	33.52
VIT_10s0003g00810.t01	Wine grape	nucleus	35.78	33.0
VIT_01s0137g00640.t01	Wine grape	nucleus	36.25	31.96
VIT_01s0010g02920.t01	Wine grape	nucleus	37.5	27.43
VIT_17s0000g06950.t01	Wine grape	nucleus	40.47	24.57
VIT_08s0056g00470.t01	Wine grape	nucleus	42.5	23.15
VIT_08s0032g01230.t01	Wine grape	nucleus, plastid	30.78	19.22
VIT_17s0000g03030.t01	Wine grape	nucleus	30.47	18.45
VIT_01s0011g04360.t01	Wine grape	plastid	30.31	16.43
VIT_07s0005g00860.t01	Wine grape	nucleus	32.34	15.67
VIT_12s0028g01050.t01	Wine grape	nucleus	25.94	13.48
VIT_12s0035g00800.t01	Wine grape	nucleus	25.0	11.69
VIT_07s0191g00210.t01	Wine grape	nucleus	30.0	11.05

Protein Annotations

Gene3D:1.20.120.1080	EntrezGene:100245855	wikigene:100245855	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB51249
ProteinID:CCB51249.1	ncoils:Coil	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	UniProt:F6HG56	EMBL:FN595754
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004017	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015074	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	GO:GO:0016776	GO:GO:0016787	GO:GO:0019205	GO:GO:0046939
InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	EntrezGene:LOC100245855
wikigene:LOC100245855	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF131	SMART:SM00490	SMART:SM00847
SUPFAM:SSF52540	UniParc:UPI000210A144	ArrayExpress:VIT_01s0010g02780	EnsemblPlantsGene:VIT_01s0010g02780	EnsemblPlants:VIT_01s0010g02780.t01	RefSeq:XP_002266642
RefSeq:XP_002266642.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:19816018..19829567

Molecular Weight (calculated)

72101.0 Da

IEP (calculated)

7.515

GRAVY (calculated)

-0.317

Length

640 amino acids

Sequence
(BLAST)

001: MALRVAQELG VQLGEEVGYA IRFEDRTSER TRIKYLTDGV LLRESLSNPD LSQYSVIILD EAHERSLNTD ILLGLMKRLV KMRASNLKVL ITSATLDGSK
101: VSRFFSNCPI LTVPGKLFPV EILYSAELPK SYIESSLKTA IDIHVREPEG DVLIFMTGQD DIEKLVVKLE ERVRSLEEGS CMDAIILPLH GSLPPELQAS
201: FFVRVFSPPP PNCRRFIVAT NIAETSLTVD GVVYVIDSGY VKQRQYNPLT GMYSLDVVQI SKVQANQRAG RAGRTRPGKC YRLYPSMVYH DDFLDVTVPE
301: IQRSSLAGSV LYLKSLDLPD IDILKFDFLD SPSSESLQDA LRQLYLIDAI DENGSITSVG RTMAELPLES SLSRMLMEAN ECGCLSQALT VAAMLSAETT
401: LLPGRSKSTE KKRKHTPTDL PDGSGWGDHI QLLQIFEQWD QTDYDPNWCK DHGLQVRGMM FVKDVRKQLS QIMQKMARGS LDVRAKERWK ESRQDYKNLR
501: KALCAGYAGQ LAERMIHHNG YRTLGLKSQL VQVHPSSVLR ADEDGMLPNY VLYHELVVTT RPYMRNVCAV EMSWVMPILK KLENLNINKL SGGSNQVEDR
601: TEEKSSDSPK KSVDVARPPN DAESRIQAAR DRFMARKAKR

Best Arabidopsis Sequence Match ( AT1G27900.1 )
(BLAST)

001: MANLPILQFE EKIVETVEKN SVVVIIGETG SGKSTQLSQI LHRHGYTKSG VIAITQPRRV AAVSVARRVA QELDVPLGED VGYAIRFEDR TTSKTRIKYL
101: TDGVLLRESL SNPMLDDYSV IILDEAHERS LNTDILLGLV KRLVRIRASN FKVLITSATL DGEKVSEFFS GCPVLNVPGK LYPVEILYSK ERPVSYIESS
201: LKVAIDIHVR EPEGDILIFM TGQDDIEKLV SRLEEKVRSL AEGSCMDAII YPLHGSLPPE MQVRVFSPPP PNCRRFIVST NIAETSLTVD GVVYVIDSGY
301: VKQRQYNPSS GMFSLDVIQI SKVQANQRAG RAGRTRPGKC YRLYPLAVYR DDFLDATIPE IQRTSLAGSV LYLKSLDLPD IDILKFDFLD APSSESLEDA
401: LKQLYFIDAI DENGAITRIG RTMSDLPLEP SLSRTLIEAN ETGCLSQALT VVAMLSAETT LLPARSKPSE KKRKHDEDSN LPNGSGYGDH IQLLQIFESW
501: DRTNYDPVWC KENGMQVRGM VFVKDVRRQL CQIMQKISKD RLEVGADGRK SSSRDDYRKL RKALCVGNAN QIAERMLRHN GYRTLSFQSQ LVQVHPSSVL
601: SADNDGMMPN YVVYHELIST TRPFMRNVCA VDMAWVAPIK RKIEKLNVRK LSGGPAPSFK VPEEKTELSK NNAETPAVSE NVESRIEAAR ERFLARKGQK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 [Source:UniProtKB/Swiss-Prot;Acc:Q93Y16]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.