Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc01g095710.2.1 | Tomato | nucleus | 64.42 | 63.46 |
PGSC0003DMT400000297 | Potato | nucleus | 63.82 | 63.1 |
KRH65271 | Soybean | nucleus | 61.32 | 61.27 |
KRH76262 | Soybean | nucleus | 61.24 | 61.24 |
GSMUA_Achr3P08220_001 | Banana | nucleus | 48.45 | 59.53 |
AT1G33390.2 | Thale cress | nucleus | 54.28 | 57.96 |
CDY48353 | Canola | nucleus | 51.02 | 55.11 |
CDY34159 | Canola | nucleus | 51.25 | 54.73 |
Bra032998.1-P | Field mustard | nucleus | 50.79 | 54.24 |
Os02t0736600-01 | Rice | nucleus | 51.48 | 53.46 |
KXG30805 | Sorghum | nucleus | 51.02 | 52.82 |
Zm00001d017967_P003 | Maize | nucleus | 50.57 | 52.23 |
HORVU0Hr1G039590.6 | Barley | nucleus | 50.87 | 52.21 |
TraesCS6B01G206600.1 | Wheat | nucleus | 50.72 | 52.1 |
TraesCS6A01G178200.1 | Wheat | nucleus | 48.07 | 51.67 |
TraesCS6A01G299400.2 | Wheat | nucleus | 50.19 | 50.0 |
TraesCS6D01G279300.1 | Wheat | nucleus | 50.11 | 49.92 |
TraesCS6B01G329000.1 | Wheat | nucleus | 49.81 | 49.89 |
VIT_10s0003g00810.t01 | Wine grape | nucleus | 17.56 | 33.43 |
VIT_07s0005g01770.t01 | Wine grape | nucleus | 18.32 | 33.24 |
VIT_01s0137g00640.t01 | Wine grape | nucleus | 17.87 | 32.51 |
VIT_01s0010g02780.t01 | Wine grape | nucleus | 15.67 | 32.34 |
VIT_01s0010g02920.t01 | Wine grape | nucleus | 19.91 | 30.06 |
VIT_17s0000g06950.t01 | Wine grape | nucleus | 20.89 | 26.19 |
VIT_08s0056g00470.t01 | Wine grape | nucleus | 21.35 | 24.0 |
VIT_08s0032g01230.t01 | Wine grape | nucleus, plastid | 16.12 | 20.78 |
VIT_17s0000g03030.t01 | Wine grape | nucleus | 16.58 | 20.72 |
VIT_01s0011g04360.t01 | Wine grape | plastid | 17.03 | 19.05 |
VIT_12s0028g01050.t01 | Wine grape | nucleus | 16.05 | 17.22 |
VIT_12s0035g00800.t01 | Wine grape | nucleus | 15.37 | 14.83 |
VIT_07s0191g00210.t01 | Wine grape | nucleus | 15.82 | 12.03 |
Os02t0736800-01 | Rice | mitochondrion | 0.0 | 0.0 |
Protein Annotations
Gene3D:1.20.120.1080 | EntrezGene:100262427 | wikigene:100262427 | Gene3D:3.40.50.300 | MapMan:35.1 | ProteinID:CCB59987 |
ProteinID:CCB59987.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | UniProt:F6HZ72 |
EMBL:FN596502 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009987 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
InterPro:IPR014001 | EntrezGene:LOC100262427 | wikigene:LOC100262427 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 |
PANTHER:PTHR18934:SF99 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | UniParc:UPI000210AA77 |
ArrayExpress:VIT_07s0005g00860 | EnsemblPlantsGene:VIT_07s0005g00860 | EnsemblPlants:VIT_07s0005g00860.t01 | RefSeq:XP_002268905 | RefSeq:XP_002268905.1 | SEG:seg |
Description
No Description!
Coordinates
chr7:-:3471008..3478722
Molecular Weight (calculated)
147966.0 Da
IEP (calculated)
7.592
GRAVY (calculated)
-0.454
Length
1321 amino acids
Sequence
(BLAST)
(BLAST)
0001: MELSLENLEQ SSGQDLWSSK GDDSNAIILP EKKGKKRKGM KQEHEKFKTN KTRKLSASQK RKLKKLEEEK EKSLLLSKSI ETLEKYKIRE DAFSLLQSSQ
0101: NLGQVETTLE KRRRAVRFSK AGLEMPHSDR PFKSQDGEME PDSNKIQSKQ EFDESDAMWP RMVQREVLSN ASISLGFTSE LVCSTELAVN SRHSPTLPAK
0201: EVSEKNYDTS MQDRRNSTPT STTADGQKNI KGTSNLPDCS LQPITTPTVV HVSRPTEVEN NRKDLPIVMM EQEIMEAIND HTAVIICGET GCGKTTQVPQ
0301: FLYEAGFGSK QASVQSGIIG VTQPRRVAVL ATAKRVAFEL GLSLGKEVGF QVRHDKMIGD SCSIKFMTDG ILLREVQNDF SLRRYSVIIL DEAHERSLNT
0401: DILIGMLSRV IQVRQKLYEE QQQMMLSGVR ISPESMVPQL KLVLMSATLR VEDFISGRRL FHTPPPVIEV PSRQFPVTIH FSKRTEIVDY IGQAYKKILS
0501: IHKKLPQGGI LVFVTGQREV EYLCQKLRKA SRELMLNSSK QNIGNEVTAV SEMNSVGGID IEEINEAFEI QGNSANQQTD RFSIYDEDHG DLDEDDSDSS
0601: YDSETESEWE VLGDDGNPLD LKTSEDDGNL VDILGEDRSL ASLKAAFDAL AGKTAINHNS KGEEVVPDTP GRCSDQSNPN MGKKRDGEND LSAGALCVLP
0701: LYAMLPAAAQ LRVFEEIKEG ERLVVVATNV AETSLTIPGI KYVVDTGREK VKNYDHSNGM ETYEVQWISK ASAAQRAGRA GRTGPGHCYR LYSSAVFNNI
0801: LPDFSMAEIL KVPVEGVILL MKSMDIDKVA NFPFPTPPDA IALAEAERCL KALEALNSKG RLTPLGKAMA HYPMSPRHSR MLLTVIQIMR KAKGYARANL
0901: VLGYAVAAAA ALSLPNPFVM QFEGNHTRND GLDQVEKANT PVTDEIVDKQ DKLKKKKLKE TAKVSRAKFS NPSSDALTVA YALQCFELSG SPVEFCNENV
1001: MHLKTLEEMS KLRKQLLQLV FNQSTIGALH EEFSWPHGTM EDTEHAWRVS SDKHPLSLNE EELLGQAICA GWADRVAKRT RAISGSSEGD RKAKAARYQA
1101: CMVKETVFLH RWSSLARSAP EFLVYSELLQ TKRPYMHGVT NVKPDWLVKY AAPLCSFSAP LTDPKPYYEP LADQVFCWVI PTFGPHLWRL PLHGVPISDN
1201: AQRVSVFAYA LLEGQVLPCL GSVRKYMAAP PASILRPEAL GQRRVGNLLS KLKSRPKTID SCLMLREAWR ENPRELHSEI LDWFQETFHK QFEVLWSQMH
1301: LEVLLDPQER FPKKKRGKRK K
0101: NLGQVETTLE KRRRAVRFSK AGLEMPHSDR PFKSQDGEME PDSNKIQSKQ EFDESDAMWP RMVQREVLSN ASISLGFTSE LVCSTELAVN SRHSPTLPAK
0201: EVSEKNYDTS MQDRRNSTPT STTADGQKNI KGTSNLPDCS LQPITTPTVV HVSRPTEVEN NRKDLPIVMM EQEIMEAIND HTAVIICGET GCGKTTQVPQ
0301: FLYEAGFGSK QASVQSGIIG VTQPRRVAVL ATAKRVAFEL GLSLGKEVGF QVRHDKMIGD SCSIKFMTDG ILLREVQNDF SLRRYSVIIL DEAHERSLNT
0401: DILIGMLSRV IQVRQKLYEE QQQMMLSGVR ISPESMVPQL KLVLMSATLR VEDFISGRRL FHTPPPVIEV PSRQFPVTIH FSKRTEIVDY IGQAYKKILS
0501: IHKKLPQGGI LVFVTGQREV EYLCQKLRKA SRELMLNSSK QNIGNEVTAV SEMNSVGGID IEEINEAFEI QGNSANQQTD RFSIYDEDHG DLDEDDSDSS
0601: YDSETESEWE VLGDDGNPLD LKTSEDDGNL VDILGEDRSL ASLKAAFDAL AGKTAINHNS KGEEVVPDTP GRCSDQSNPN MGKKRDGEND LSAGALCVLP
0701: LYAMLPAAAQ LRVFEEIKEG ERLVVVATNV AETSLTIPGI KYVVDTGREK VKNYDHSNGM ETYEVQWISK ASAAQRAGRA GRTGPGHCYR LYSSAVFNNI
0801: LPDFSMAEIL KVPVEGVILL MKSMDIDKVA NFPFPTPPDA IALAEAERCL KALEALNSKG RLTPLGKAMA HYPMSPRHSR MLLTVIQIMR KAKGYARANL
0901: VLGYAVAAAA ALSLPNPFVM QFEGNHTRND GLDQVEKANT PVTDEIVDKQ DKLKKKKLKE TAKVSRAKFS NPSSDALTVA YALQCFELSG SPVEFCNENV
1001: MHLKTLEEMS KLRKQLLQLV FNQSTIGALH EEFSWPHGTM EDTEHAWRVS SDKHPLSLNE EELLGQAICA GWADRVAKRT RAISGSSEGD RKAKAARYQA
1101: CMVKETVFLH RWSSLARSAP EFLVYSELLQ TKRPYMHGVT NVKPDWLVKY AAPLCSFSAP LTDPKPYYEP LADQVFCWVI PTFGPHLWRL PLHGVPISDN
1201: AQRVSVFAYA LLEGQVLPCL GSVRKYMAAP PASILRPEAL GQRRVGNLLS KLKSRPKTID SCLMLREAWR ENPRELHSEI LDWFQETFHK QFEVLWSQMH
1301: LEVLLDPQER FPKKKRGKRK K
0001: MASVVGDDCN LDVMPPRKKK NKGSNKMQDK LNSNNNTGSK KSRKRKLNSN VNTVACKSQK RKLKKLEEDK EKEILFSKTA ELLDKYKISE DVSSLLQSSK
0101: VIGRSATKLE KRRRAMQLSK AGVETEHSDE SVEQNDNDDD SCMDEPTTPE HVEIETPTFV TDSEQQLVHA DLMISAEESS SKLEVDDTVD MIPLTTCRDD
0201: DEDSMDGLIE NEDVTVQGPR VPAFVVHVSR PAEVEETRKD LPIVMMEQEI MEAINRHPAV IISGQTGCGK TTQVPQFLYE AGFGSKQFSS RSGIIGITQP
0301: RRVAVLATAK RVAFELGVRL GKEVGFQVRY DKKIGENSSI KFMTDGILLR EIQNDFLLRR YSVIILDEAH ERSLNTDILI GMLTRVIKIR QEYYEEQQKS
0401: LQSGGTVTSE CQITPLKLIL MSATLRVEDF VSGKRLFPNI PPLIEVPTRQ YPVTIHFSKK TEIVDYIGEA YKKVMSIHKK LPQGGILVFV TGQREVDYLC
0501: EKLRKSSKEL VVQAAKRDAY VKKKCDDGSF GGVDMKEIAE AFDDDSNNQN SRFSSHGEDP SDIGDGNYDD DFEEEDMYES DEDRDWETVD DGFASSFVEE
0601: GKLDALRAAF NALADKNGSV SAEPAKSIAA ENQEAEQVKN KFSPGKLRVL PLYAMLSPAA QLRVFEEVEK EERLVVVATN VAETSLTIPG IKYVVDTGRV
0701: KVKNYDSKTG MESYEVDWIS QASASQRAGR AGRTGPGHCY RLYSSAVFSN IFEESSLPEI MKVPVDGVIL LMKSMNIPKV ENFPFPTPPE PSAIREAERC
0801: LKALEALDSN GGLTPLGKAM SHYPMSPRHS RMLLTVIQML KETRNYSRAN LILGYAVAAV AALSLPNPLI MEFEGEKKNE SKDADKTVKQ EDKQRKKDRK
0901: EKIKAARDRF SNPSSDALTV AYALHSFEVS ENGMGFCEAN GLHLKTMDEM SKLKDQLLRL VFNCCKPSET EDSFSWTHGT IQDVEKSWRI TTSTSSKTPL
1001: LQNEEELLGE AICAGWADRV ARKTRATEYQ ACAVQEPVFL HRWSSLINSA PELLVYSELL LTNRPYMHGA TRVRPEWLVK HAKSLCVFSA PLKDPKPYYS
1101: SEEDRVLCWV VPSFGPHNWE LPAHSVAITE DRDRAAAFGC ALLQGEVLTC LKSFRALLAG KPETLLEREA WGLERVGSLV MVLTEKKIDT LESLRKNWEQ
1201: NPNVLYSEIE VWFQKKFRHR VKDLWQTMLK EAHVRRS
0101: VIGRSATKLE KRRRAMQLSK AGVETEHSDE SVEQNDNDDD SCMDEPTTPE HVEIETPTFV TDSEQQLVHA DLMISAEESS SKLEVDDTVD MIPLTTCRDD
0201: DEDSMDGLIE NEDVTVQGPR VPAFVVHVSR PAEVEETRKD LPIVMMEQEI MEAINRHPAV IISGQTGCGK TTQVPQFLYE AGFGSKQFSS RSGIIGITQP
0301: RRVAVLATAK RVAFELGVRL GKEVGFQVRY DKKIGENSSI KFMTDGILLR EIQNDFLLRR YSVIILDEAH ERSLNTDILI GMLTRVIKIR QEYYEEQQKS
0401: LQSGGTVTSE CQITPLKLIL MSATLRVEDF VSGKRLFPNI PPLIEVPTRQ YPVTIHFSKK TEIVDYIGEA YKKVMSIHKK LPQGGILVFV TGQREVDYLC
0501: EKLRKSSKEL VVQAAKRDAY VKKKCDDGSF GGVDMKEIAE AFDDDSNNQN SRFSSHGEDP SDIGDGNYDD DFEEEDMYES DEDRDWETVD DGFASSFVEE
0601: GKLDALRAAF NALADKNGSV SAEPAKSIAA ENQEAEQVKN KFSPGKLRVL PLYAMLSPAA QLRVFEEVEK EERLVVVATN VAETSLTIPG IKYVVDTGRV
0701: KVKNYDSKTG MESYEVDWIS QASASQRAGR AGRTGPGHCY RLYSSAVFSN IFEESSLPEI MKVPVDGVIL LMKSMNIPKV ENFPFPTPPE PSAIREAERC
0801: LKALEALDSN GGLTPLGKAM SHYPMSPRHS RMLLTVIQML KETRNYSRAN LILGYAVAAV AALSLPNPLI MEFEGEKKNE SKDADKTVKQ EDKQRKKDRK
0901: EKIKAARDRF SNPSSDALTV AYALHSFEVS ENGMGFCEAN GLHLKTMDEM SKLKDQLLRL VFNCCKPSET EDSFSWTHGT IQDVEKSWRI TTSTSSKTPL
1001: LQNEEELLGE AICAGWADRV ARKTRATEYQ ACAVQEPVFL HRWSSLINSA PELLVYSELL LTNRPYMHGA TRVRPEWLVK HAKSLCVFSA PLKDPKPYYS
1101: SEEDRVLCWV VPSFGPHNWE LPAHSVAITE DRDRAAAFGC ALLQGEVLTC LKSFRALLAG KPETLLEREA WGLERVGSLV MVLTEKKIDT LESLRKNWEQ
1201: NPNVLYSEIE VWFQKKFRHR VKDLWQTMLK EAHVRRS
Arabidopsis Description
FAS4FAS4 [Source:UniProtKB/TrEMBL;Acc:A0A178WIP4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.