Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G279300.1 | Wheat | nucleus | 93.33 | 92.84 |
| TraesCS6A01G299400.2 | Wheat | nucleus | 93.18 | 92.68 |
| TraesCS6B01G206600.1 | Wheat | nucleus | 80.14 | 82.19 |
| KXG30805 | Sorghum | nucleus | 71.49 | 73.9 |
| Os02t0736600-01 | Rice | nucleus | 71.11 | 73.74 |
| Zm00001d017967_P003 | Maize | nucleus | 69.22 | 71.38 |
| GSMUA_Achr3P08220_001 | Banana | nucleus | 48.75 | 59.81 |
| VIT_07s0005g00860.t01 | Wine grape | nucleus | 49.89 | 49.81 |
| Solyc01g095710.2.1 | Tomato | nucleus | 48.82 | 48.02 |
| PGSC0003DMT400000297 | Potato | nucleus | 48.52 | 47.9 |
| AT1G33390.2 | Thale cress | nucleus | 44.73 | 47.7 |
| KRH76262 | Soybean | nucleus | 46.93 | 46.86 |
| KRH65271 | Soybean | nucleus | 46.93 | 46.82 |
| CDY48353 | Canola | nucleus | 42.99 | 46.36 |
| CDY34159 | Canola | nucleus | 43.29 | 46.16 |
| Bra032998.1-P | Field mustard | nucleus | 42.99 | 45.84 |
| TraesCS1B01G398400.1 | Wheat | cytosol | 10.08 | 33.67 |
| TraesCS4B01G075500.1 | Wheat | nucleus | 17.89 | 33.48 |
| TraesCS4B01G180200.1 | Wheat | cytosol | 17.66 | 32.32 |
| TraesCS3B01G165500.1 | Wheat | nucleus | 16.98 | 31.95 |
| TraesCS7B01G060800.1 | Wheat | plastid | 16.83 | 31.14 |
| TraesCS1B01G398100.1 | Wheat | cytosol | 13.27 | 25.4 |
| TraesCS7B01G245800.1 | Wheat | nucleus | 20.24 | 24.81 |
| TraesCS4B01G374800.1 | Wheat | nucleus | 19.64 | 24.76 |
| TraesCS1B01G254900.1 | Wheat | nucleus | 19.41 | 24.15 |
| TraesCS4B01G148500.1 | Wheat | nucleus | 20.47 | 21.88 |
| TraesCS2B01G249700.1 | Wheat | nucleus | 20.55 | 21.46 |
| TraesCS1B01G168700.3 | Wheat | nucleus | 16.15 | 20.66 |
| TraesCS5B01G392800.1 | Wheat | nucleus | 16.15 | 18.52 |
| TraesCS3B01G024900.1 | Wheat | mitochondrion | 16.98 | 17.96 |
| TraesCS3B01G337600.3 | Wheat | nucleus | 15.24 | 16.82 |
| TraesCS2B01G320800.1 | Wheat | nucleus, plastid | 15.77 | 14.57 |
| TraesCS3B01G129700.1 | Wheat | nucleus | 16.91 | 13.71 |
| TraesCS2B01G190100.1 | Wheat | nucleus | 16.91 | 12.86 |
| TraesCS5B01G080500.1 | Wheat | nucleus | 12.81 | 12.77 |
| Os02t0736800-01 | Rice | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS |
| InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 |
| PFAM:PF07717 | ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF99 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS6B01G329000 | EnsemblPlants:TraesCS6B01G329000.1 |
| TIGR:cd00046 | TIGR:cd00079 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6B:+:578512911..578518127
Molecular Weight (calculated)
148106.0 Da
IEP (calculated)
8.542
GRAVY (calculated)
-0.561
Length
1319 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEKEDSNALI LPCKRKNKAQ GKGKDGNKNK TKEDAKMSKT RLKKLQKLEV DSNALILPCK TKNKSQGKGK DGNKNKTKED AKMSKTQLKK LQKLEEDKQK
0101: KALQAQSIGT LQKHRIADEA YSLLHTSGSI GQAATMKEKR RRAMQLCKAG LDVPEELSLF KKNSDQKGVP VPENTEDVPE ACPVKLVQST KLYHPGSERK
0201: NHESDAVKPN MGIGVSILDQ KTEETNADVD NSAHQSIPKQ KTEKTNDDDD ILVHPTVRSS VPSCSGVEID IQDKEPQQGE AAVQECFSSP IVVHVSRPHE
0301: VEKARRDLPI IMMEQEIMEA IYENSVVILC GETGCGKTTQ VPQFLYEAGF GTSNRADRKG MIGITQPRRV AVLATSKRVS YELGLKLGKE VGFQVRHDKQ
0401: VGNKCSIKFM TDGILLREVQ SDFLLKHYSV IILDEAHERS LNTDILIGML SRVIKARKFV YADQQKQIRS GMKIDPADMV SQLKVVLMSA TLQLKDFISN
0501: RRLFDVIPPA VEVPTRQFPV TVHFAKRTHD DYLAQAYKKV LSIHKSLPPG GILVFVTGQR EVDYLCKKLQ RASKRQIGKK SEMVGDEYGS RPEVEEKEIF
0601: EAYDIDRTEP EHQDGIFSSY GEDETDDELN VASSDAETES EMDTDSDEED SVAHETAEDG PVLSFLKGAE SSSVLKASFK AISGQPETAE EASNATIAEK
0701: SGPSASRARL RVLPLYAMLP ASQQLRVFHD IPEGERLVVV ATNVAETSLT IPGITYVVDT GKEKVKNYDH ATGMASYEVQ WISKASASQR AGRAGRTGPG
0801: HCYRLYSGAA YSKDDLFPDF TEPEIKKMPV EGIVLMLKSM NIVKVENFPF PTPPNKESLV EAQHCLKILE AVDNQEKLTS MGKAMAQYPM SPRHSRLLLT
0901: IIKMLKSQEG CARSNLILGY ATAAASALSY TNPFQVQGNT DRETNEDGPD PEHKDRHERK SQKKLKAMVR EARKDFSIPS SDALTISHAL RSFECSKNRV
1001: EFCRDYSLHL KTMEEMSKLR KQLLRLIFNY SKFCDEFAWN FGGSQDVEQA WGSETNKKPM LNEEEILGQG ICAGWADRVA KKINTFSGLS KEDRKVRAAR
1101: YQSCALNDII YLNRSSSVAQ IPPDYVVYSE LLNTKRSYMY GVTSVKPGWL LKYASSLCTF SAPLEDPKPY YEPQNDQVYC YVSPIFCRHN WQLPLHSLPI
1201: KDATRRVQIF AWALLKGDVL PCLRVVQKFL ALSPSVVLGP ASQRRVGDLL SRMSKKTIYS RAALRDAWNT DPDFLYPEIQ AWIQDKYQSQ LGEIWEQMHR
1301: EVCLEGRELF PKRFKKVKG
0101: KALQAQSIGT LQKHRIADEA YSLLHTSGSI GQAATMKEKR RRAMQLCKAG LDVPEELSLF KKNSDQKGVP VPENTEDVPE ACPVKLVQST KLYHPGSERK
0201: NHESDAVKPN MGIGVSILDQ KTEETNADVD NSAHQSIPKQ KTEKTNDDDD ILVHPTVRSS VPSCSGVEID IQDKEPQQGE AAVQECFSSP IVVHVSRPHE
0301: VEKARRDLPI IMMEQEIMEA IYENSVVILC GETGCGKTTQ VPQFLYEAGF GTSNRADRKG MIGITQPRRV AVLATSKRVS YELGLKLGKE VGFQVRHDKQ
0401: VGNKCSIKFM TDGILLREVQ SDFLLKHYSV IILDEAHERS LNTDILIGML SRVIKARKFV YADQQKQIRS GMKIDPADMV SQLKVVLMSA TLQLKDFISN
0501: RRLFDVIPPA VEVPTRQFPV TVHFAKRTHD DYLAQAYKKV LSIHKSLPPG GILVFVTGQR EVDYLCKKLQ RASKRQIGKK SEMVGDEYGS RPEVEEKEIF
0601: EAYDIDRTEP EHQDGIFSSY GEDETDDELN VASSDAETES EMDTDSDEED SVAHETAEDG PVLSFLKGAE SSSVLKASFK AISGQPETAE EASNATIAEK
0701: SGPSASRARL RVLPLYAMLP ASQQLRVFHD IPEGERLVVV ATNVAETSLT IPGITYVVDT GKEKVKNYDH ATGMASYEVQ WISKASASQR AGRAGRTGPG
0801: HCYRLYSGAA YSKDDLFPDF TEPEIKKMPV EGIVLMLKSM NIVKVENFPF PTPPNKESLV EAQHCLKILE AVDNQEKLTS MGKAMAQYPM SPRHSRLLLT
0901: IIKMLKSQEG CARSNLILGY ATAAASALSY TNPFQVQGNT DRETNEDGPD PEHKDRHERK SQKKLKAMVR EARKDFSIPS SDALTISHAL RSFECSKNRV
1001: EFCRDYSLHL KTMEEMSKLR KQLLRLIFNY SKFCDEFAWN FGGSQDVEQA WGSETNKKPM LNEEEILGQG ICAGWADRVA KKINTFSGLS KEDRKVRAAR
1101: YQSCALNDII YLNRSSSVAQ IPPDYVVYSE LLNTKRSYMY GVTSVKPGWL LKYASSLCTF SAPLEDPKPY YEPQNDQVYC YVSPIFCRHN WQLPLHSLPI
1201: KDATRRVQIF AWALLKGDVL PCLRVVQKFL ALSPSVVLGP ASQRRVGDLL SRMSKKTIYS RAALRDAWNT DPDFLYPEIQ AWIQDKYQSQ LGEIWEQMHR
1301: EVCLEGRELF PKRFKKVKG
0001: MASVVGDDCN LDVMPPRKKK NKGSNKMQDK LNSNNNTGSK KSRKRKLNSN VNTVACKSQK RKLKKLEEDK EKEILFSKTA ELLDKYKISE DVSSLLQSSK
0101: VIGRSATKLE KRRRAMQLSK AGVETEHSDE SVEQNDNDDD SCMDEPTTPE HVEIETPTFV TDSEQQLVHA DLMISAEESS SKLEVDDTVD MIPLTTCRDD
0201: DEDSMDGLIE NEDVTVQGPR VPAFVVHVSR PAEVEETRKD LPIVMMEQEI MEAINRHPAV IISGQTGCGK TTQVPQFLYE AGFGSKQFSS RSGIIGITQP
0301: RRVAVLATAK RVAFELGVRL GKEVGFQVRY DKKIGENSSI KFMTDGILLR EIQNDFLLRR YSVIILDEAH ERSLNTDILI GMLTRVIKIR QEYYEEQQKS
0401: LQSGGTVTSE CQITPLKLIL MSATLRVEDF VSGKRLFPNI PPLIEVPTRQ YPVTIHFSKK TEIVDYIGEA YKKVMSIHKK LPQGGILVFV TGQREVDYLC
0501: EKLRKSSKEL VVQAAKRDAY VKKKCDDGSF GGVDMKEIAE AFDDDSNNQN SRFSSHGEDP SDIGDGNYDD DFEEEDMYES DEDRDWETVD DGFASSFVEE
0601: GKLDALRAAF NALADKNGSV SAEPAKSIAA ENQEAEQVKN KFSPGKLRVL PLYAMLSPAA QLRVFEEVEK EERLVVVATN VAETSLTIPG IKYVVDTGRV
0701: KVKNYDSKTG MESYEVDWIS QASASQRAGR AGRTGPGHCY RLYSSAVFSN IFEESSLPEI MKVPVDGVIL LMKSMNIPKV ENFPFPTPPE PSAIREAERC
0801: LKALEALDSN GGLTPLGKAM SHYPMSPRHS RMLLTVIQML KETRNYSRAN LILGYAVAAV AALSLPNPLI MEFEGEKKNE SKDADKTVKQ EDKQRKKDRK
0901: EKIKAARDRF SNPSSDALTV AYALHSFEVS ENGMGFCEAN GLHLKTMDEM SKLKDQLLRL VFNCCKPSET EDSFSWTHGT IQDVEKSWRI TTSTSSKTPL
1001: LQNEEELLGE AICAGWADRV ARKTRATEYQ ACAVQEPVFL HRWSSLINSA PELLVYSELL LTNRPYMHGA TRVRPEWLVK HAKSLCVFSA PLKDPKPYYS
1101: SEEDRVLCWV VPSFGPHNWE LPAHSVAITE DRDRAAAFGC ALLQGEVLTC LKSFRALLAG KPETLLEREA WGLERVGSLV MVLTEKKIDT LESLRKNWEQ
1201: NPNVLYSEIE VWFQKKFRHR VKDLWQTMLK EAHVRRS
0101: VIGRSATKLE KRRRAMQLSK AGVETEHSDE SVEQNDNDDD SCMDEPTTPE HVEIETPTFV TDSEQQLVHA DLMISAEESS SKLEVDDTVD MIPLTTCRDD
0201: DEDSMDGLIE NEDVTVQGPR VPAFVVHVSR PAEVEETRKD LPIVMMEQEI MEAINRHPAV IISGQTGCGK TTQVPQFLYE AGFGSKQFSS RSGIIGITQP
0301: RRVAVLATAK RVAFELGVRL GKEVGFQVRY DKKIGENSSI KFMTDGILLR EIQNDFLLRR YSVIILDEAH ERSLNTDILI GMLTRVIKIR QEYYEEQQKS
0401: LQSGGTVTSE CQITPLKLIL MSATLRVEDF VSGKRLFPNI PPLIEVPTRQ YPVTIHFSKK TEIVDYIGEA YKKVMSIHKK LPQGGILVFV TGQREVDYLC
0501: EKLRKSSKEL VVQAAKRDAY VKKKCDDGSF GGVDMKEIAE AFDDDSNNQN SRFSSHGEDP SDIGDGNYDD DFEEEDMYES DEDRDWETVD DGFASSFVEE
0601: GKLDALRAAF NALADKNGSV SAEPAKSIAA ENQEAEQVKN KFSPGKLRVL PLYAMLSPAA QLRVFEEVEK EERLVVVATN VAETSLTIPG IKYVVDTGRV
0701: KVKNYDSKTG MESYEVDWIS QASASQRAGR AGRTGPGHCY RLYSSAVFSN IFEESSLPEI MKVPVDGVIL LMKSMNIPKV ENFPFPTPPE PSAIREAERC
0801: LKALEALDSN GGLTPLGKAM SHYPMSPRHS RMLLTVIQML KETRNYSRAN LILGYAVAAV AALSLPNPLI MEFEGEKKNE SKDADKTVKQ EDKQRKKDRK
0901: EKIKAARDRF SNPSSDALTV AYALHSFEVS ENGMGFCEAN GLHLKTMDEM SKLKDQLLRL VFNCCKPSET EDSFSWTHGT IQDVEKSWRI TTSTSSKTPL
1001: LQNEEELLGE AICAGWADRV ARKTRATEYQ ACAVQEPVFL HRWSSLINSA PELLVYSELL LTNRPYMHGA TRVRPEWLVK HAKSLCVFSA PLKDPKPYYS
1101: SEEDRVLCWV VPSFGPHNWE LPAHSVAITE DRDRAAAFGC ALLQGEVLTC LKSFRALLAG KPETLLEREA WGLERVGSLV MVLTEKKIDT LESLRKNWEQ
1201: NPNVLYSEIE VWFQKKFRHR VKDLWQTMLK EAHVRRS
Arabidopsis Description
FAS4FAS4 [Source:UniProtKB/TrEMBL;Acc:A0A178WIP4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.