Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G148100.2 | Wheat | nucleus | 98.45 | 98.64 |
| TraesCS1A01G151100.1 | Wheat | nucleus | 98.45 | 98.64 |
| HORVU1Hr1G039880.1 | Barley | nucleus | 90.4 | 98.62 |
| Zm00001d045376_P001 | Maize | cytosol | 28.9 | 90.3 |
| Os10t0471350-01 | Rice | nucleus | 87.39 | 90.28 |
| GSMUA_Achr8P12550_001 | Banana | cytosol | 38.7 | 87.69 |
| KXG38358 | Sorghum | nucleus | 85.45 | 85.04 |
| Zm00001d032735_P001 | Maize | plastid | 85.16 | 84.91 |
| Zm00001d019056_P001 | Maize | nucleus | 16.2 | 83.5 |
| PGSC0003DMT400055058 | Potato | nucleus | 64.02 | 77.28 |
| KRH72171 | Soybean | nucleus | 64.69 | 74.11 |
| VIT_08s0032g01230.t01 | Wine grape | nucleus, plastid | 72.94 | 73.37 |
| Solyc01g006970.2.1 | Tomato | nucleus | 73.13 | 73.13 |
| Bra023043.1-P | Field mustard | nucleus | 69.84 | 72.36 |
| KRH32860 | Soybean | mitochondrion, nucleus, plastid | 71.68 | 71.75 |
| CDX79642 | Canola | nucleus, vacuole | 70.42 | 70.14 |
| CDX84588 | Canola | plastid, vacuole | 70.03 | 69.76 |
| AT2G35920.3 | Thale cress | plastid | 69.06 | 69.33 |
| GSMUA_Achr8P12540_001 | Banana | nucleus | 34.82 | 65.04 |
| TraesCS5B01G392800.1 | Wheat | nucleus | 44.33 | 39.74 |
| TraesCS3B01G024900.1 | Wheat | mitochondrion | 44.42 | 36.73 |
| TraesCS4B01G180200.1 | Wheat | cytosol | 24.05 | 34.4 |
| TraesCS1B01G398400.1 | Wheat | cytosol | 12.22 | 31.9 |
| TraesCS3B01G165500.1 | Wheat | nucleus | 21.63 | 31.81 |
| TraesCS4B01G075500.1 | Wheat | nucleus | 21.34 | 31.21 |
| TraesCS7B01G060800.1 | Wheat | plastid | 21.24 | 30.72 |
| TraesCS3B01G337600.3 | Wheat | nucleus | 32.3 | 27.87 |
| TraesCS2B01G320800.1 | Wheat | nucleus, plastid | 35.01 | 25.28 |
| TraesCS4B01G374800.1 | Wheat | nucleus | 25.22 | 24.86 |
| TraesCS7B01G245800.1 | Wheat | nucleus | 25.8 | 24.72 |
| TraesCS1B01G254900.1 | Wheat | nucleus | 24.64 | 23.96 |
| TraesCS1B01G398100.1 | Wheat | cytosol | 16.0 | 23.95 |
| TraesCS4B01G148500.1 | Wheat | nucleus | 26.67 | 22.29 |
| TraesCS2B01G249700.1 | Wheat | nucleus | 23.57 | 19.24 |
| TraesCS6B01G206600.1 | Wheat | nucleus | 21.05 | 16.87 |
| TraesCS6B01G329000.1 | Wheat | nucleus | 20.66 | 16.15 |
| TraesCS3B01G129700.1 | Wheat | nucleus | 21.53 | 13.65 |
| TraesCS2B01G190100.1 | Wheat | nucleus | 21.63 | 12.86 |
| TraesCS5B01G080500.1 | Wheat | nucleus | 16.1 | 12.55 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 |
| ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF191 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS1B01G168700 | EnsemblPlants:TraesCS1B01G168700.3 | TIGR:cd00046 |
| TIGR:cd00079 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:299441636..299458493
Molecular Weight (calculated)
114909.0 Da
IEP (calculated)
9.091
GRAVY (calculated)
-0.309
Length
1031 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLLHTSGCRG SLLFRSGFPF PATTTRRNLR ALTTAAATPN MYRGGRGGGG GTNSQRGRGR GRGGGGRGGR GGGGGGRGEQ RWWDPQWRAE RLRQMAGEVE
0101: KVDEHEWWNT IGQLREGSQQ ELVVKKNFGR DGQNTLADIA QRHGLYFNAY NKGKTLVFSK VPLPDYRADL DERHGSSQNE IKMSNETERR VENLLSRAQS
0201: NNNASASTST VSMRQSLPST STSIAESTTY VDKQKLSFQL RDMQRSKKMM PSARSMQSFR EKLPAFKARE EFLKAVAANQ VLVISGETGC GKTTQLPQFI
0301: LEEEIDNLRG ADCSIICTQP RRISAISVAA RVGSERGEEL GETVGYQIRL ESKRSTQTRL LFCTTGVLLR KLVQEPDLVG VSHLLVDEIH ERGMSEDFLI
0401: IILRDLLPRR PDLRLVLMSA TINAELFSKY FGDAPIMHIP GFTFPVAELF LEDILEKTQY KIKSERDNFQ GNSRKKRLAS VKNDPLADIF EDVDISKEYG
0501: NYSITTRQSL EAWSVTELDL SLVEGTIEYI CRHEGEGAIL VFLTGWDEIS KLLDKIKGNN LLGNSNKFLV LPLHGSMPTV NQREIFDRAP ANMRKIVLAT
0601: NIAESSITID DVVYVIDCGK AKETSYDALN KLACLLPSWI SKASAHQRRG RAGRVQPGVC YRLYPEVIHA AMPQFQLPEI LRTPLQELCL TIKSLQLGAV
0701: ASFLAKSLQP PDPLSVKNAI ELLKTIGALD DLEELTYLGR HLCTLPLDPN IGKMLLIGSV FQCLDPALTI AAALAYRNPF VLPIDRKEEA DAVKRSFAGD
0801: SCSDHIALLK AFEAWKEAKR SGRERSFCWE NFLSPMTLKM MDGMRNQFFD LLSDIGFVSK TRGVKAYNHY GKDLEMVSAV LCAGLYPNVI QCKRRGKRTA
0901: FYTKDVGKVD IHPSSVNAGV QQFPLPYLVY SEKVKTASIY VRDSTNISDY ALLLFGGSLR PSNTGEGIEM LGGYLHFSAP KRIIELIQRL RGELDKLLQR
1001: KIEEPALDIF SEGKGVVAAA IELLHSQNIY H
0101: KVDEHEWWNT IGQLREGSQQ ELVVKKNFGR DGQNTLADIA QRHGLYFNAY NKGKTLVFSK VPLPDYRADL DERHGSSQNE IKMSNETERR VENLLSRAQS
0201: NNNASASTST VSMRQSLPST STSIAESTTY VDKQKLSFQL RDMQRSKKMM PSARSMQSFR EKLPAFKARE EFLKAVAANQ VLVISGETGC GKTTQLPQFI
0301: LEEEIDNLRG ADCSIICTQP RRISAISVAA RVGSERGEEL GETVGYQIRL ESKRSTQTRL LFCTTGVLLR KLVQEPDLVG VSHLLVDEIH ERGMSEDFLI
0401: IILRDLLPRR PDLRLVLMSA TINAELFSKY FGDAPIMHIP GFTFPVAELF LEDILEKTQY KIKSERDNFQ GNSRKKRLAS VKNDPLADIF EDVDISKEYG
0501: NYSITTRQSL EAWSVTELDL SLVEGTIEYI CRHEGEGAIL VFLTGWDEIS KLLDKIKGNN LLGNSNKFLV LPLHGSMPTV NQREIFDRAP ANMRKIVLAT
0601: NIAESSITID DVVYVIDCGK AKETSYDALN KLACLLPSWI SKASAHQRRG RAGRVQPGVC YRLYPEVIHA AMPQFQLPEI LRTPLQELCL TIKSLQLGAV
0701: ASFLAKSLQP PDPLSVKNAI ELLKTIGALD DLEELTYLGR HLCTLPLDPN IGKMLLIGSV FQCLDPALTI AAALAYRNPF VLPIDRKEEA DAVKRSFAGD
0801: SCSDHIALLK AFEAWKEAKR SGRERSFCWE NFLSPMTLKM MDGMRNQFFD LLSDIGFVSK TRGVKAYNHY GKDLEMVSAV LCAGLYPNVI QCKRRGKRTA
0901: FYTKDVGKVD IHPSSVNAGV QQFPLPYLVY SEKVKTASIY VRDSTNISDY ALLLFGGSLR PSNTGEGIEM LGGYLHFSAP KRIIELIQRL RGELDKLLQR
1001: KIEEPALDIF SEGKGVVAAA IELLHSQNIY H
0001: MQQSLSCFST LRFLLPFSSK LSPLRPLFHT AAMPPHGPNS QGGRRGGGHS SGRRGGRGGG GRGGGGGGRG EQRWWDPVWR AERLRQQQAE MEVLDENEWW
0101: NKIEQWKTGG EQEMLIKRNF SRGDQQTLSD MALQMGLYFH AYNKGKALVV SKVPLPDYRA DLDERHGSTQ KEIKMSTETE RKLGSLLKTT QESGSSGASA
0201: SAFNDQQDRT STLGLKRPDS ASKLPDSLEK EKFSFALKER QEKLKATESV KALKAFREKL PAFKMKEEFL NSVSQNQVLV VSGETGCGKT TQLPQFILEE
0301: EISSLRGADC NIICTQPRRI SAISVASRIS AERGESIGES VGYQIRLESK RSDQTRLLFC TTGVLLRRLI EDPNLTNVSH LLVDEIHERG MNEDFLLIIL
0401: RDLLPRRPDL RLILMSATIN ADMFSTYFGN SPTMHIPGFT FPVAELFLED VLEKSRYNIK SSDSGNYQGS SRGRRRESES KKDDLTTLFE DIDINSHYKS
0501: YSSATRNSLE AWSGAQIDVD LVEATIEHIC RLEGGGAILV FLTGWDEISK LLEKINMNNF LGDSSKFLVL PLHGSMPTVN QREIFDRPPP NKRKIVLATN
0601: IAESSITIDD VVYVVDCGKA KETSYDALNK VACLLPSWIS KASAHQRRGR AGRVQAGVCY RLYPKVIYDA FPQYQLPEII RTPLQELCLH IKSLQVGSIG
0701: SFLAKALQPP DALAVENAIE LLKTIGALND VEELTPLGRH LCTLPVDPNI GKMLLIGAIF QCVNPALTIA AALAYRSPFV LPLNRKEEAD EAKRYFAGDS
0801: CSDHIALLKA YEGYRDAKRG GNEKDFCWQN FLSPVTLRMM EDMRNQFLDL LSDIGFVDKS KPNAYNQYSY DMEMISAVLC AGLYPNVVQC KRRGKRTAFY
0901: TKELGKVDIH PGSVNARVNL FSLPYLVYSE KVKTTSVYIR DSTNISDYAL LMFGGNLIPS KTGEGIEMLG GYLHFSASKN ILELIQRLRG EVDKLLNKKI
1001: EDPSLDITVE GKGVVSAVVE LLRSQKH
0101: NKIEQWKTGG EQEMLIKRNF SRGDQQTLSD MALQMGLYFH AYNKGKALVV SKVPLPDYRA DLDERHGSTQ KEIKMSTETE RKLGSLLKTT QESGSSGASA
0201: SAFNDQQDRT STLGLKRPDS ASKLPDSLEK EKFSFALKER QEKLKATESV KALKAFREKL PAFKMKEEFL NSVSQNQVLV VSGETGCGKT TQLPQFILEE
0301: EISSLRGADC NIICTQPRRI SAISVASRIS AERGESIGES VGYQIRLESK RSDQTRLLFC TTGVLLRRLI EDPNLTNVSH LLVDEIHERG MNEDFLLIIL
0401: RDLLPRRPDL RLILMSATIN ADMFSTYFGN SPTMHIPGFT FPVAELFLED VLEKSRYNIK SSDSGNYQGS SRGRRRESES KKDDLTTLFE DIDINSHYKS
0501: YSSATRNSLE AWSGAQIDVD LVEATIEHIC RLEGGGAILV FLTGWDEISK LLEKINMNNF LGDSSKFLVL PLHGSMPTVN QREIFDRPPP NKRKIVLATN
0601: IAESSITIDD VVYVVDCGKA KETSYDALNK VACLLPSWIS KASAHQRRGR AGRVQAGVCY RLYPKVIYDA FPQYQLPEII RTPLQELCLH IKSLQVGSIG
0701: SFLAKALQPP DALAVENAIE LLKTIGALND VEELTPLGRH LCTLPVDPNI GKMLLIGAIF QCVNPALTIA AALAYRSPFV LPLNRKEEAD EAKRYFAGDS
0801: CSDHIALLKA YEGYRDAKRG GNEKDFCWQN FLSPVTLRMM EDMRNQFLDL LSDIGFVDKS KPNAYNQYSY DMEMISAVLC AGLYPNVVQC KRRGKRTAFY
0901: TKELGKVDIH PGSVNARVNL FSLPYLVYSE KVKTTSVYIR DSTNISDYAL LMFGGNLIPS KTGEGIEMLG GYLHFSASKN ILELIQRLRG EVDKLLNKKI
1001: EDPSLDITVE GKGVVSAVVE LLRSQKH
Arabidopsis Description
RNA helicase family protein [Source:TAIR;Acc:AT2G35920]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.