Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4A01G124200.2 | Wheat | cytosol | 99.45 | 99.72 |
TraesCS4D01G181700.1 | Wheat | cytosol | 99.58 | 99.58 |
HORVU4Hr1G052730.3 | Barley | cytosol | 99.45 | 99.45 |
KXG39505 | Sorghum | cytosol | 95.56 | 95.43 |
Zm00001d028923_P002 | Maize | nucleus | 94.59 | 94.59 |
Os03t0314100-01 | Rice | cytosol, nucleus, plastid | 71.01 | 90.78 |
KRG96553 | Soybean | nucleus | 88.35 | 88.35 |
Zm00001d047601_P006 | Maize | nucleus | 94.59 | 88.23 |
KRH68290 | Soybean | nucleus | 87.93 | 88.06 |
KRH69191 | Soybean | nucleus | 87.93 | 87.81 |
Bra000445.1-P | Field mustard | cytosol | 87.79 | 87.55 |
CDX83337 | Canola | cytosol | 87.79 | 87.55 |
VIT_07s0005g01770.t01 | Wine grape | nucleus | 88.35 | 87.5 |
CDX76626 | Canola | nucleus | 86.55 | 86.91 |
CDX95715 | Canola | cytosol | 87.38 | 86.9 |
AT2G47250.1 | Thale cress | nucleus | 87.66 | 86.69 |
CDY11413 | Canola | nucleus | 86.13 | 86.49 |
Bra007671.1-P | Field mustard | nucleus | 86.13 | 86.49 |
PGSC0003DMT400023284 | Potato | nucleus | 86.41 | 86.17 |
Solyc01g079250.2.1 | Tomato | nucleus | 86.27 | 86.03 |
AT3G62310.1 | Thale cress | nucleus | 86.55 | 85.95 |
GSMUA_Achr1P18470_001 | Banana | cytosol | 41.05 | 83.15 |
KRH31768 | Soybean | cytosol, nucleus | 65.05 | 81.28 |
Bra003744.1-P | Field mustard | nucleus | 74.34 | 80.0 |
CDY68405 | Canola | nucleus | 73.65 | 79.25 |
AT5G14900.1 | Thale cress | cytosol | 30.24 | 72.43 |
CDX74061 | Canola | cytosol | 29.13 | 65.42 |
CDX74059 | Canola | nucleus | 23.44 | 64.02 |
Bra001237.1-P | Field mustard | cytosol | 37.86 | 63.19 |
Bra001238.1-P | Field mustard | cytosol, mitochondrion | 22.88 | 62.5 |
TraesCS1B01G398400.1 | Wheat | cytosol | 27.74 | 50.63 |
TraesCS1B01G398100.1 | Wheat | cytosol | 44.24 | 46.3 |
TraesCS3B01G165500.1 | Wheat | nucleus | 41.75 | 42.94 |
TraesCS7B01G060800.1 | Wheat | plastid | 40.22 | 40.67 |
TraesCS4B01G075500.1 | Wheat | nucleus | 36.62 | 37.45 |
TraesCS4B01G374800.1 | Wheat | nucleus | 48.13 | 33.17 |
TraesCS1B01G254900.1 | Wheat | nucleus | 47.57 | 32.36 |
TraesCS7B01G245800.1 | Wheat | nucleus | 47.85 | 32.06 |
TraesCS4B01G148500.1 | Wheat | nucleus | 50.21 | 29.34 |
TraesCS1B01G168700.3 | Wheat | nucleus | 34.4 | 24.05 |
TraesCS2B01G249700.1 | Wheat | nucleus | 40.64 | 23.2 |
TraesCS5B01G392800.1 | Wheat | nucleus | 32.04 | 20.09 |
TraesCS3B01G024900.1 | Wheat | mitochondrion | 32.32 | 18.68 |
TraesCS6B01G206600.1 | Wheat | nucleus | 32.87 | 18.43 |
TraesCS6B01G329000.1 | Wheat | nucleus | 32.32 | 17.66 |
TraesCS3B01G337600.3 | Wheat | nucleus | 29.26 | 17.66 |
TraesCS2B01G320800.1 | Wheat | nucleus, plastid | 29.13 | 14.71 |
TraesCS5B01G080500.1 | Wheat | nucleus | 24.69 | 13.45 |
TraesCS3B01G129700.1 | Wheat | nucleus | 30.24 | 13.41 |
TraesCS2B01G190100.1 | Wheat | nucleus | 31.21 | 12.98 |
Protein Annotations
Gene3D:1.20.120.1080 | MapMan:16.4.7.3.3 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:DUF1605 | GO:GO:0003674 |
GO:GO:0003824 | GO:GO:0004386 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 |
PFAM:PF13401 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF193 | SMART:SM00487 |
SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS4B01G180200 | EnsemblPlants:TraesCS4B01G180200.1 | TIGR:cd00046 |
TIGR:cd00079 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:394601541..394604711
Molecular Weight (calculated)
81680.4 Da
IEP (calculated)
7.361
GRAVY (calculated)
-0.342
Length
721 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTERKRKVS LFDVVDETSV SAKLGRAGIN GAAAAAAANP SINRWNGRPY SARYLEILEK RRTLPVWQQK DEFLRVLRDN QTLILVGETG SGKTTQIPQF
101: VLEADGLSNR SMVACTQPRR VAAMSVSRRV AEEMDVTIGE EVGYSIRFED CSSHKTVLKY LTDGMLLREA MADPLLERYK VIVLDEAHER TLATDVLFGL
201: LKEVLKNRPD LKLVVMSATL EAEKFQGYFS GAPLMKVPGR LHPVEIFYTQ EPERDYLEAA IRTVVQIHMC EPAGDILVFL TGEEEIEDAC RKINKEVNNM
301: GDQVGPVKVV PLYSTLPPAM QQKIFDPAPP PLKEEGPAGR KIVVSTNIAE TSLTIDGIVY VIDPGFSKQK VYNPRIRVES LLVSPISKAS AHQRAGRAGR
401: TQPGKCFRLY TEKSFNGDLQ PQTYPEILRS NLANTVLTLK KLGIDDLVHF DFMDPPAPET LMRALEVLNY LGALDDEGNL TSLGEMMSEF PLDPQMSKML
501: VISPRYNCSN EILSISAMLS VPNCFLRPRE AQKAADEAKA RFGHIDGDHL TLLNVYHAYK QNNEDPTWCY ENFVNARAMK SADNVRQQLV RIMTRFNLKM
601: CSTDFNSREY YVNIRKAMLS GYFMQVAHLE RTGHYLTVKD NQVVHLHPSN CMDHKPEWVI YNEYVLTTRN FIRTVTDIRG EWLIDIAPQY YDLTNFPSCE
701: AKRVLERLHN KRERERAASR N
101: VLEADGLSNR SMVACTQPRR VAAMSVSRRV AEEMDVTIGE EVGYSIRFED CSSHKTVLKY LTDGMLLREA MADPLLERYK VIVLDEAHER TLATDVLFGL
201: LKEVLKNRPD LKLVVMSATL EAEKFQGYFS GAPLMKVPGR LHPVEIFYTQ EPERDYLEAA IRTVVQIHMC EPAGDILVFL TGEEEIEDAC RKINKEVNNM
301: GDQVGPVKVV PLYSTLPPAM QQKIFDPAPP PLKEEGPAGR KIVVSTNIAE TSLTIDGIVY VIDPGFSKQK VYNPRIRVES LLVSPISKAS AHQRAGRAGR
401: TQPGKCFRLY TEKSFNGDLQ PQTYPEILRS NLANTVLTLK KLGIDDLVHF DFMDPPAPET LMRALEVLNY LGALDDEGNL TSLGEMMSEF PLDPQMSKML
501: VISPRYNCSN EILSISAMLS VPNCFLRPRE AQKAADEAKA RFGHIDGDHL TLLNVYHAYK QNNEDPTWCY ENFVNARAMK SADNVRQQLV RIMTRFNLKM
601: CSTDFNSREY YVNIRKAMLS GYFMQVAHLE RTGHYLTVKD NQVVHLHPSN CMDHKPEWVI YNEYVLTTRN FIRTVTDIRG EWLIDIAPQY YDLTNFPSCE
701: AKRVLERLHN KRERERAASR N
001: MGTERKRKVS LFDVMEDPSL SSKNTKSNGL GLAAAAGGGS NLINKWNGKA YSQRYFEILE KRRDLPVWLQ KDDFLNTLNS NQTLILVGET GSGKTTQIPQ
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 [Source:UniProtKB/Swiss-Prot;Acc:O22899]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.