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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4A01G124200.2 Wheat cytosol 99.45 99.72
TraesCS4D01G181700.1 Wheat cytosol 99.58 99.58
HORVU4Hr1G052730.3 Barley cytosol 99.45 99.45
KXG39505 Sorghum cytosol 95.56 95.43
Zm00001d028923_P002 Maize nucleus 94.59 94.59
Os03t0314100-01 Rice cytosol, nucleus, plastid 71.01 90.78
KRG96553 Soybean nucleus 88.35 88.35
Zm00001d047601_P006 Maize nucleus 94.59 88.23
KRH68290 Soybean nucleus 87.93 88.06
KRH69191 Soybean nucleus 87.93 87.81
Bra000445.1-P Field mustard cytosol 87.79 87.55
CDX83337 Canola cytosol 87.79 87.55
VIT_07s0005g01770.t01 Wine grape nucleus 88.35 87.5
CDX76626 Canola nucleus 86.55 86.91
CDX95715 Canola cytosol 87.38 86.9
AT2G47250.1 Thale cress nucleus 87.66 86.69
CDY11413 Canola nucleus 86.13 86.49
Bra007671.1-P Field mustard nucleus 86.13 86.49
PGSC0003DMT400023284 Potato nucleus 86.41 86.17
Solyc01g079250.2.1 Tomato nucleus 86.27 86.03
AT3G62310.1 Thale cress nucleus 86.55 85.95
GSMUA_Achr1P18470_001 Banana cytosol 41.05 83.15
KRH31768 Soybean cytosol, nucleus 65.05 81.28
Bra003744.1-P Field mustard nucleus 74.34 80.0
CDY68405 Canola nucleus 73.65 79.25
AT5G14900.1 Thale cress cytosol 30.24 72.43
CDX74061 Canola cytosol 29.13 65.42
CDX74059 Canola nucleus 23.44 64.02
Bra001237.1-P Field mustard cytosol 37.86 63.19
Bra001238.1-P Field mustard cytosol, mitochondrion 22.88 62.5
TraesCS1B01G398400.1 Wheat cytosol 27.74 50.63
TraesCS1B01G398100.1 Wheat cytosol 44.24 46.3
TraesCS3B01G165500.1 Wheat nucleus 41.75 42.94
TraesCS7B01G060800.1 Wheat plastid 40.22 40.67
TraesCS4B01G075500.1 Wheat nucleus 36.62 37.45
TraesCS4B01G374800.1 Wheat nucleus 48.13 33.17
TraesCS1B01G254900.1 Wheat nucleus 47.57 32.36
TraesCS7B01G245800.1 Wheat nucleus 47.85 32.06
TraesCS4B01G148500.1 Wheat nucleus 50.21 29.34
TraesCS1B01G168700.3 Wheat nucleus 34.4 24.05
TraesCS2B01G249700.1 Wheat nucleus 40.64 23.2
TraesCS5B01G392800.1 Wheat nucleus 32.04 20.09
TraesCS3B01G024900.1 Wheat mitochondrion 32.32 18.68
TraesCS6B01G206600.1 Wheat nucleus 32.87 18.43
TraesCS6B01G329000.1 Wheat nucleus 32.32 17.66
TraesCS3B01G337600.3 Wheat nucleus 29.26 17.66
TraesCS2B01G320800.1 Wheat nucleus, plastid 29.13 14.71
TraesCS5B01G080500.1 Wheat nucleus 24.69 13.45
TraesCS3B01G129700.1 Wheat nucleus 30.24 13.41
TraesCS2B01G190100.1 Wheat nucleus 31.21 12.98
Protein Annotations
Gene3D:1.20.120.1080MapMan:16.4.7.3.3Gene3D:3.40.50.300InterPro:AAA+_ATPaseInterPro:DUF1605GO:GO:0003674
GO:GO:0003824GO:GO:0004386GO:GO:0016787InterPro:Helicase-assoc_domInterPro:Helicase_ATP-bdInterPro:Helicase_C
InterPro:IPR001650InterPro:IPR014001InterPro:P-loop_NTPasePFAM:PF00271PFAM:PF04408PFAM:PF07717
PFAM:PF13401PFscan:PS51192PFscan:PS51194PANTHER:PTHR18934PANTHER:PTHR18934:SF193SMART:SM00487
SMART:SM00490SMART:SM00847SUPFAM:SSF52540EnsemblPlantsGene:TraesCS4B01G180200EnsemblPlants:TraesCS4B01G180200.1TIGR:cd00046
TIGR:cd00079SEG:seg::::
Description
No Description!
Coordinates
chr4B:-:394601541..394604711
Molecular Weight (calculated)
81680.4 Da
IEP (calculated)
7.361
GRAVY (calculated)
-0.342
Length
721 amino acids
Sequence
(BLAST)
001: MGTERKRKVS LFDVVDETSV SAKLGRAGIN GAAAAAAANP SINRWNGRPY SARYLEILEK RRTLPVWQQK DEFLRVLRDN QTLILVGETG SGKTTQIPQF
101: VLEADGLSNR SMVACTQPRR VAAMSVSRRV AEEMDVTIGE EVGYSIRFED CSSHKTVLKY LTDGMLLREA MADPLLERYK VIVLDEAHER TLATDVLFGL
201: LKEVLKNRPD LKLVVMSATL EAEKFQGYFS GAPLMKVPGR LHPVEIFYTQ EPERDYLEAA IRTVVQIHMC EPAGDILVFL TGEEEIEDAC RKINKEVNNM
301: GDQVGPVKVV PLYSTLPPAM QQKIFDPAPP PLKEEGPAGR KIVVSTNIAE TSLTIDGIVY VIDPGFSKQK VYNPRIRVES LLVSPISKAS AHQRAGRAGR
401: TQPGKCFRLY TEKSFNGDLQ PQTYPEILRS NLANTVLTLK KLGIDDLVHF DFMDPPAPET LMRALEVLNY LGALDDEGNL TSLGEMMSEF PLDPQMSKML
501: VISPRYNCSN EILSISAMLS VPNCFLRPRE AQKAADEAKA RFGHIDGDHL TLLNVYHAYK QNNEDPTWCY ENFVNARAMK SADNVRQQLV RIMTRFNLKM
601: CSTDFNSREY YVNIRKAMLS GYFMQVAHLE RTGHYLTVKD NQVVHLHPSN CMDHKPEWVI YNEYVLTTRN FIRTVTDIRG EWLIDIAPQY YDLTNFPSCE
701: AKRVLERLHN KRERERAASR N
Best Arabidopsis Sequence Match ( AT2G47250.1 )
(BLAST)
001: MGTERKRKVS LFDVMEDPSL SSKNTKSNGL GLAAAAGGGS NLINKWNGKA YSQRYFEILE KRRDLPVWLQ KDDFLNTLNS NQTLILVGET GSGKTTQIPQ
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 [Source:UniProtKB/Swiss-Prot;Acc:O22899]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.