Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH69191 | Soybean | nucleus | 90.47 | 72.3 |
| KRH68290 | Soybean | nucleus | 88.39 | 70.83 |
| KRG96553 | Soybean | nucleus | 88.39 | 70.74 |
| VIT_07s0005g01770.t01 | Wine grape | nucleus | 86.31 | 68.41 |
| PGSC0003DMT400023284 | Potato | nucleus | 85.1 | 67.91 |
| Solyc01g079250.2.1 | Tomato | nucleus | 85.1 | 67.91 |
| CDX76626 | Canola | nucleus | 83.02 | 66.71 |
| CDY11413 | Canola | nucleus | 82.67 | 66.43 |
| Bra007671.1-P | Field mustard | nucleus | 82.67 | 66.43 |
| CDX83337 | Canola | cytosol | 83.19 | 66.39 |
| Bra000445.1-P | Field mustard | cytosol | 83.19 | 66.39 |
| CDX95715 | Canola | cytosol | 83.36 | 66.34 |
| KXG39505 | Sorghum | cytosol | 81.8 | 65.37 |
| TraesCS4A01G124200.2 | Wheat | cytosol | 81.46 | 65.37 |
| Zm00001d028923_P002 | Maize | nucleus | 81.63 | 65.33 |
| TraesCS4D01G181700.1 | Wheat | cytosol | 81.46 | 65.19 |
| HORVU4Hr1G052730.3 | Barley | cytosol | 81.46 | 65.19 |
| AT5G14900.1 | Thale cress | cytosol | 33.97 | 65.12 |
| TraesCS4B01G180200.1 | Wheat | cytosol | 81.28 | 65.05 |
| Bra003744.1-P | Field mustard | nucleus | 71.92 | 61.94 |
| CDY68405 | Canola | nucleus | 71.23 | 61.34 |
| Os03t0314100-01 | Rice | cytosol, nucleus, plastid | 59.45 | 60.82 |
| Zm00001d047601_P006 | Maize | nucleus | 80.76 | 60.28 |
| GSMUA_Achr1P18470_001 | Banana | cytosol | 36.22 | 58.71 |
| CDX74059 | Canola | nucleus | 24.78 | 54.17 |
| CDX74061 | Canola | cytosol | 29.64 | 53.27 |
| Bra001238.1-P | Field mustard | cytosol, mitochondrion | 23.92 | 52.27 |
| Bra001237.1-P | Field mustard | cytosol | 36.74 | 49.07 |
| KRH69386 | Soybean | cytosol | 15.6 | 34.22 |
| KRH21325 | Soybean | nucleus | 38.82 | 33.63 |
| KRH70930 | Soybean | nucleus | 40.38 | 33.05 |
| KRH75071 | Soybean | nucleus | 39.86 | 32.62 |
| KRH58751 | Soybean | nucleus | 38.65 | 31.99 |
| KRH12910 | Soybean | cytosol, nucleus | 40.38 | 31.28 |
| KRH40933 | Soybean | cytosol | 32.76 | 31.03 |
| KRG97372 | Soybean | nucleus | 46.45 | 27.71 |
| KRH54662 | Soybean | nucleus | 47.14 | 26.0 |
| KRH74752 | Soybean | nucleus | 45.23 | 25.29 |
| KRH05918 | Soybean | nucleus | 47.49 | 22.89 |
| KRH17401 | Soybean | nucleus | 47.49 | 22.78 |
| KRH72171 | Soybean | nucleus | 33.28 | 21.33 |
| KRH32860 | Soybean | mitochondrion, nucleus, plastid | 33.45 | 18.74 |
| KRH23170 | Soybean | nucleus | 40.03 | 18.17 |
| KRH10165 | Soybean | nucleus | 39.86 | 18.08 |
| KRH38164 | Soybean | nucleus | 33.28 | 17.42 |
| KRG90929 | Soybean | plastid | 33.45 | 16.94 |
| KRH41772 | Soybean | plastid | 34.14 | 16.74 |
| KRH60477 | Soybean | plastid | 33.8 | 16.53 |
| KRH44757 | Soybean | plastid | 31.54 | 15.68 |
| KRH76262 | Soybean | nucleus | 33.1 | 14.46 |
| KRH65271 | Soybean | nucleus | 33.1 | 14.45 |
| KRH73592 | Soybean | nucleus | 28.08 | 13.94 |
| KRH14525 | Soybean | nucleus | 28.08 | 13.92 |
| KRH13104 | Soybean | mitochondrion | 9.36 | 12.62 |
| KRH01863 | Soybean | nucleus | 29.98 | 12.03 |
| KRG97543 | Soybean | nucleus, plastid | 31.2 | 10.41 |
| KRH31333 | Soybean | nucleus, plastid | 30.68 | 10.2 |
Protein Annotations
| Gene3D:1.20.120.1080 | MapMan:16.4.7.3.3 | Gene3D:3.40.50.300 | EMBL:ACUP02006084 | ncoils:Coil | EnsemblPlantsGene:GLYMA_10G010900 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| UniProt:K7LGT6 | EnsemblPlants:KRH31768 | ProteinID:KRH31768 | ProteinID:KRH31768.1 | InterPro:P-loop_NTPase | PFAM:PF00271 |
| PFAM:PF04408 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF193 | SMART:SM00490 |
| SMART:SM00847 | SUPFAM:SSF52540 | UniParc:UPI000295C75F | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr10:-:1031018..1034176
Molecular Weight (calculated)
65503.7 Da
IEP (calculated)
7.512
GRAVY (calculated)
-0.270
Length
577 amino acids
Sequence
(BLAST)
(BLAST)
001: IPQFVSEALD IETPDKRRKM MIACTQPRRV AAMSVSRRVA EEMDVNIGEE LFYVSNGMYL TDGMPLREAM TDPLLERYKV IILDEAHERT LATDVLFGLL
101: KEVLRNRPDL KLVVMSATLE AENFQGYFSR APLMKVPGRL HPLEAAIRTV VQIHMCELPG DILVFLTEEE EIEDACRKIN KEISNMGDQV GPVKVQKIFK
201: PAPPPVKEGG HPGRKIMVST KIAETSLTID SIVYVIDPGF AKQQVYNPRI RVESLLVSPI SKASAHQRSG RAGRTQPGKC FRLYTEKTYP EILRSNLAYT
301: VLTLKKLGID DLVPFDFMDP PAPETLMRAL EVLNYLGALD DDGNLTKLGQ IMSEFPLDPQ MPKMLVVSPE FNCSNEILSV SAVLSVPNCF VRPRAAQNAA
401: DEAKASLGHI DGDHLTLLNV YHAYKQNNDD PSWCYDNFVN HRALKSADSV RQQLVRIMAR FNLKLCITDF NSRDYYVNIR KAMLAGYFMQ VAHLERTGHL
501: LDSEKQPGLL VVLLHPSNCL DHKPEWMLLR CSQLYRLVDV APHYYDLSNC PQCEAKRVLE RLYKKREKEK EEARSRK
101: KEVLRNRPDL KLVVMSATLE AENFQGYFSR APLMKVPGRL HPLEAAIRTV VQIHMCELPG DILVFLTEEE EIEDACRKIN KEISNMGDQV GPVKVQKIFK
201: PAPPPVKEGG HPGRKIMVST KIAETSLTID SIVYVIDPGF AKQQVYNPRI RVESLLVSPI SKASAHQRSG RAGRTQPGKC FRLYTEKTYP EILRSNLAYT
301: VLTLKKLGID DLVPFDFMDP PAPETLMRAL EVLNYLGALD DDGNLTKLGQ IMSEFPLDPQ MPKMLVVSPE FNCSNEILSV SAVLSVPNCF VRPRAAQNAA
401: DEAKASLGHI DGDHLTLLNV YHAYKQNNDD PSWCYDNFVN HRALKSADSV RQQLVRIMAR FNLKLCITDF NSRDYYVNIR KAMLAGYFMQ VAHLERTGHL
501: LDSEKQPGLL VVLLHPSNCL DHKPEWMLLR CSQLYRLVDV APHYYDLSNC PQCEAKRVLE RLYKKREKEK EEARSRK
001: MGTERKRKVS LFDVMEDPSL SSKNTKSNGL GLAAAAGGGS NLINKWNGKA YSQRYFEILE KRRDLPVWLQ KDDFLNTLNS NQTLILVGET GSGKTTQIPQ
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 [Source:UniProtKB/Swiss-Prot;Acc:O22899]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.