CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g00810.t01	Wine grape	nucleus	81.83	78.53
PGSC0003DMT400046188	Potato	nucleus	78.83	76.09
Solyc09g097820.2.1	Tomato	nucleus	78.98	75.9
GSMUA_Achr11P...	Banana	nucleus	42.64	74.93
AT4G18465.1	Thale cress	nucleus	76.43	73.24
CDX78859	Canola	nucleus	75.68	72.21
Bra013313.1-P	Field mustard	nucleus	75.53	72.17
CDX99466	Canola	nucleus	75.53	71.86
OQU86123	Sorghum	nucleus	74.17	70.57
Os01t0212100-01	Rice	nucleus	74.02	70.43
TraesCS3D01G148100.1	Wheat	nucleus	74.02	70.33
TraesCS3B01G165500.1	Wheat	nucleus	73.87	70.19
TraesCS3A01G131800.1	Wheat	nucleus	73.72	70.04
HORVU3Hr1G028550.17	Barley	cytosol	69.67	66.57
Zm00001d039380_P001	Maize	nucleus	62.01	43.61
KRH69191	Soybean	nucleus	43.84	40.44
KRH68290	Soybean	nucleus	43.09	39.86
KRG96553	Soybean	nucleus	42.94	39.67
KRH31768	Soybean	cytosol, nucleus	33.63	38.82
KRH70930	Soybean	nucleus	39.94	37.73
KRH75071	Soybean	nucleus	39.49	37.3
KRH58751	Soybean	nucleus	37.69	36.01
KRH12910	Soybean	cytosol, nucleus	37.24	33.29
KRG97372	Soybean	nucleus	45.95	31.64
KRH69386	Soybean	cytosol	12.31	31.18
KRH54662	Soybean	nucleus	43.84	27.92
KRH74752	Soybean	nucleus	42.79	27.62
KRH40933	Soybean	cytosol	25.08	27.42
KRH05918	Soybean	nucleus	46.55	25.9
KRH17401	Soybean	nucleus	46.55	25.77
KRH72171	Soybean	nucleus	30.93	22.89
KRH10165	Soybean	nucleus	42.19	22.09
KRH23170	Soybean	nucleus	41.89	21.95
KRH32860	Soybean	mitochondrion, nucleus, plastid	30.63	19.81
KRH38164	Soybean	nucleus	32.13	19.42
KRH13104	Soybean	mitochondrion	11.86	18.46
KRG90929	Soybean	plastid	31.23	18.26
KRH60477	Soybean	plastid	31.98	18.05
KRH41772	Soybean	plastid	31.83	18.01
KRH44757	Soybean	plastid	30.03	17.23
KRH76262	Soybean	nucleus	32.28	16.28
KRH65271	Soybean	nucleus	32.28	16.26
KRH73592	Soybean	nucleus	26.28	15.06
KRH14525	Soybean	nucleus	25.83	14.78
KRH01863	Soybean	nucleus	29.73	13.77
KRG97543	Soybean	nucleus, plastid	33.18	12.78
KRH31333	Soybean	nucleus, plastid	32.43	12.44

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02008352	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605
EnsemblPlantsGene:GLYMA_13G232900	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009506	GO:GO:0009987	GO:GO:0016787
InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:K7M1E8
EnsemblPlants:KRH21325	ProteinID:KRH21325	ProteinID:KRH21325.1	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF136
SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI0002949682	SEG:seg

Description

hypothetical protein

Coordinates

chr13:-:34383110..34394283

Molecular Weight (calculated)

74776.9 Da

IEP (calculated)

8.352

GRAVY (calculated)

-0.234

Length

666 amino acids

Sequence
(BLAST)

001: MSQFWKPGTE RPQGRVVDDE EGGVLFLSGS HHSSSSSRYG YASIDKQRQR LPVFKYRTAI LYLVETRATT IIVGETGSGK TTQIPQYLKE AGWAAGGRLI
101: ACTQPRRLAV QAVASRVAEE MGVKLGEEVG YTIRFEDVTK PDVTVLKFLT DGVLLREMMD DPLLTKYSVI MLDEAHERSI STDILLGLLK KIQRRRPELR
201: LIISSATIEA KSMSDFFRMR KKRREPENEE HGLQVEPVIL SVEGRGFNVQ INYSEEPVQD YVQAAVSTVL LIHEREPAGD VLVFLTGQDD IDASVQLLND
301: EVQTTGKHSS GLIVLPLYSG LSRAEQELVF SQAPRGKRKV IISTNIAETS LTLEGIVYVV DSGFSKQRFY NPISDIENLV VAPISRASAR QRAGRAGRVR
401: PGKCYRLYTE EYFLNHMSNE GIPEIQRSSM VSCVIQVLDD DAKLTSPTGF QVAEIPLDPM VSKMIIASSQ LGCSEEIITI AAVLSVQSIW ISGRGIQKES
501: DEAKLRFAAA EGDHVTFLNV YKGFHQSGKS SQWCHKNYVN YHAMRKVLEV REQLKRIAKR IGLVLKSCES DMQVVRKAVT AGFFANACHL EEYSHNGMYK
601: TLRGSQEVYI HPSSVLFRVN PKWVIYNSLV STDRQYMRNV ITIDPSCLLE AAPHFYQLQQ SNHLLR

Best Arabidopsis Sequence Match ( AT4G18465.1 )
(BLAST)

001: MAFWKPGTEK PRFEEDGEGG IVFMSNNLAS SSSSSYGYAN IEKQRQRLPV YKYRTEILYL VENHATTIIV GETGSGKTTQ IPQYLKEAGW AEGGRVIACT
101: QPRRLAVQAV SARVAEEMGV NLGEEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMID EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKTM SNFFNSSKKR HAPEGSTPGP KLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQEDIET AIKLLEEEAH
301: SNQKNSSGLL PLPLYSGLSR SEQELIFTPT PRGKRKVILS TNIAETSLTL EGVVYVIDSG FSKQKFYNPI SDIESLVVAP ISKASARQRS GRAGRVRPGK
401: CYRLYTEDYF LNQMPGEGIP EMQRSNLVST VIQLKALGID NILGFDWPAP PSSEAMIRAL EVLYSLQILD DDAKLTSPTG FQVAELPLDP MISKMILASS
501: ELGCSHEIIT IAAVLSVQSV WIIARGVQKE QDEAKLRFAA AEGDHVTFLN VYKGFLESKK PTQWCYKNFL NYQSMKKVVE IRDQLKRIAR RLGITLKSCD
601: GDMEAVRKAV TAGFFANACR LEPHSNGVYK TIRGSEEVYI HPSSVLFRVN PKWVVYQSIV STERQYMRNV VTINPSWLTE VAPHFYQNRQ NAMSF

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 [Source:UniProtKB/Swiss-Prot;Acc:F4JRJ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.