Factsheet for GSMUA_Achr11P12280_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g00810.t01	Wine grape	nucleus	79.42	43.37
Os01t0212100-01	Rice	nucleus	78.89	42.71
KRH21325	Soybean	nucleus	74.93	42.64
OQU86123	Sorghum	nucleus	78.63	42.57
TraesCS3D01G148100.1	Wheat	nucleus	77.57	41.94
TraesCS3B01G165500.1	Wheat	nucleus	77.57	41.94
TraesCS3A01G131800.1	Wheat	nucleus	76.78	41.51
PGSC0003DMT400046188	Potato	nucleus	73.88	40.58
Solyc09g097820.2.1	Tomato	nucleus	73.61	40.26
Bra013313.1-P	Field mustard	nucleus	71.5	38.88
AT4G18465.1	Thale cress	nucleus	70.98	38.7
CDX99466	Canola	nucleus	70.98	38.43
CDX78859	Canola	nucleus	70.71	38.4
HORVU3Hr1G028550.17	Barley	cytosol	69.13	37.59
GSMUA_Achr1P18470_001	Banana	cytosol	34.56	36.8
Zm00001d039380_P001	Maize	nucleus	71.77	28.72
GSMUA_Achr2P20940_001	Banana	nucleus	38.79	21.91
GSMUA_Achr3P12710_001	Banana	nucleus	41.95	21.9
GSMUA_Achr4P23370_001	Banana	nucleus	37.73	19.07
GSMUA_Achr3P24350_001	Banana	endoplasmic reticulum, vacuole	35.09	18.71
GSMUA_Achr10P...	Banana	nucleus	38.26	14.87
GSMUA_Achr8P12540_001	Banana	nucleus	21.64	14.86
GSMUA_Achr5P05110_001	Banana	nucleus	38.79	14.47
GSMUA_Achr3P08220_001	Banana	nucleus	35.62	12.56
GSMUA_Achr4P07530_001	Banana	mitochondrion	31.13	10.13
GSMUA_Achr3P20920_001	Banana	mitochondrion, nucleus	32.19	9.75
GSMUA_Achr5P02110_001	Banana	mitochondrion	28.5	9.59
GSMUA_Achr6P17860_001	Banana	nucleus	31.4	8.36
GSMUA_Achr8P17640_001	Banana	nucleus	24.8	7.63
GSMUA_Achr8P12550_001	Banana	cytosol	5.28	4.4

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DNA/RNA_helicase_DEAH_CS	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0009506	EnsemblPlantsGene:GSMUA_Achr11G12280_001	EnsemblPlants:GSMUA_Achr11P12280_001	EnsemblPlants:GSMUA_Achr11T12280_001
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M0RRK8	InterPro:P-loop_NTPase
PFAM:PF00271	PFAM:PF13604	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934
PANTHER:PTHR18934:SF136	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00029661CE	SEG:seg

Description

Putative Probable ATP-dependent RNA helicase DHX35 [Source:GMGC_GENE;Acc:GSMUA_Achr11G12280_001]

Coordinates

chr11:+:11288455..11294320

Molecular Weight (calculated)

41968.3 Da

IEP (calculated)

6.195

GRAVY (calculated)

-0.185

Length

379 amino acids

Sequence
(BLAST)

001: MAQFWRPGSE RPRATLVDDE EGGVLFVSAP PPSSSSGFGH SSLERQRQRL PVFKYRDAIL YLVENHATTI IVGETGSGKT TQIPQYLKEA GWAEGGRVVA
101: CTQPRRLAVQ SVASRVAEEM GVKIGEEVGY TIRFEDQTNP SVTVIKFLTD GVLIREMMDD PLLTKYSVIM VDEAHERSLS TDMLLGLLKK IQRRRPELRI
201: IISSATIEAK SMSTFFQARK KDLRHAAEDS VPSHLPAVLS VEGKGYTVEI HYVEEPVPDY LQAAVGTVLS INDKEPAGDI LVFLTGQDDI DAAVKLLRED
301: TQDDRRRTSG LLVLPLYSGL SRVDQDLVFA PTPKGKRKVV ISTNIAETSL TLEGVVYVVD SGFSKQRFYN PVYCIISHA

Best Arabidopsis Sequence Match ( AT4G18465.1 )
(BLAST)

001: MAFWKPGTEK PRFEEDGEGG IVFMSNNLAS SSSSSYGYAN IEKQRQRLPV YKYRTEILYL VENHATTIIV GETGSGKTTQ IPQYLKEAGW AEGGRVIACT
101: QPRRLAVQAV SARVAEEMGV NLGEEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMID EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKTM SNFFNSSKKR HAPEGSTPGP KLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQEDIET AIKLLEEEAH
301: SNQKNSSGLL PLPLYSGLSR SEQELIFTPT PRGKRKVILS TNIAETSLTL EGVVYVIDSG FSKQKFYNPI SDIESLVVAP ISKASARQRS GRAGRVRPGK
401: CYRLYTEDYF LNQMPGEGIP EMQRSNLVST VIQLKALGID NILGFDWPAP PSSEAMIRAL EVLYSLQILD DDAKLTSPTG FQVAELPLDP MISKMILASS
501: ELGCSHEIIT IAAVLSVQSV WIIARGVQKE QDEAKLRFAA AEGDHVTFLN VYKGFLESKK PTQWCYKNFL NYQSMKKVVE IRDQLKRIAR RLGITLKSCD
601: GDMEAVRKAV TAGFFANACR LEPHSNGVYK TIRGSEEVYI HPSSVLFRVN PKWVVYQSIV STERQYMRNV VTINPSWLTE VAPHFYQNRQ NAMSF

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 [Source:UniProtKB/Swiss-Prot;Acc:F4JRJ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.