Factsheet for Solyc09g097820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046188	Potato	nucleus	98.41	98.84
VIT_10s0003g00810.t01	Wine grape	nucleus	81.96	81.84
KRH21325	Soybean	nucleus	75.9	78.98
Bra013313.1-P	Field mustard	nucleus	76.62	76.18
CDX78859	Canola	nucleus	76.48	75.93
CDX99466	Canola	nucleus	76.48	75.71
AT4G18465.1	Thale cress	nucleus	75.76	75.54
TraesCS3D01G148100.1	Wheat	nucleus	75.32	74.47
TraesCS3B01G165500.1	Wheat	nucleus	75.18	74.32
TraesCS3A01G131800.1	Wheat	nucleus	75.18	74.32
OQU86123	Sorghum	nucleus	74.89	74.14
GSMUA_Achr11P...	Banana	nucleus	40.26	73.61
Os01t0212100-01	Rice	nucleus	74.31	73.57
HORVU3Hr1G028550.17	Barley	cytosol	70.85	70.44
Zm00001d039380_P001	Maize	nucleus	63.78	46.67
Solyc01g079250.2.1	Tomato	nucleus	44.73	42.88
Solyc09g008120.2.1	Tomato	nucleus	41.27	40.23
Solyc05g015040.2.1	Tomato	nucleus	37.66	37.29
Solyc12g017700.1.1	Tomato	nucleus	46.03	36.0
Solyc03g115390.2.1	Tomato	nucleus	45.6	34.76
Solyc12g089010.1.1	Tomato	nucleus	38.67	33.09
Solyc01g110990.2.1	Tomato	nucleus	46.61	29.07
Solyc07g039550.2.1	Tomato	nucleus	46.9	27.31
Solyc10g076910.1.1	Tomato	nucleus	40.69	21.95
Solyc01g006970.2.1	Tomato	nucleus	30.01	20.17
Solyc04g007510.2.1	Tomato	plastid	29.73	17.85
Solyc01g006710.2.1	Tomato	mitochondrion	28.28	16.84
Solyc03g118920.2.1	Tomato	mitochondrion, nucleus	29.15	16.82
Solyc01g095710.2.1	Tomato	nucleus	31.02	16.03
Solyc07g044930.2.1	Tomato	nucleus	27.71	16.01
Solyc01g103690.2.1	Tomato	nucleus	31.17	15.02
Solyc11g010310.1.1	Tomato	nucleus	33.33	13.55
Solyc04g014210.2.1	Tomato	nucleus	32.9	13.18

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005681	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009506	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:K4CWV4	InterPro:P-loop_NTPase
PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR18934	PANTHER:PTHR18934:SF136	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc09g097820.2	EnsemblPlants:Solyc09g097820.2.1	UniParc:UPI000276BD8C	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:-:71809359..71821624

Molecular Weight (calculated)

77639.4 Da

IEP (calculated)

7.781

GRAVY (calculated)

-0.182

Length

693 amino acids

Sequence
(BLAST)

001: MSQFWKPGTE RPRLVDDEEG GVLLYATSSS SSSGFGYGSF EKQRQRLPVY KYKTAILYSV ETHATTIIVG ETGSGKTTQI PQYLKEAGWA EGGRMIACTQ
101: PRRLAVQAVA TRVAEEMDVK LGEEVGYTIR FEDITNEELT RVKFLTDGVL LREMMDDPLL SKYSVIMVDE AHERSLSTDI LLGLLKKIQK RRPELRIIIS
201: SATIEAKSMA AFFNTRICRR RREEEQGPRK EPAILSVEGR GFNVEIFYVD DPVSDYVQSA VSTVMSIHDQ ERMGDILVFL TGQDDIDTAI QLLTEEAQSS
301: GKQGLVSVPL YSGLPRADQD LVFSPTPRGK RKVIFSTNIA ETSLTLEGIV YVVDSGFSKQ RFYNPISDIE NLVVAPISKA SARQRAGRAG RVRPGKCFRL
401: YTEDYFSNEM SVVGIPEIQR SNLVSCVIQL KALGIDNILG FDWPASPSPE SMIRALEILY SLGVLDDDAK LTSPTGFQVA EIPLDPLISK MILASCEFGC
501: SEEIITIAAV LSIQSIWIPV RGVQKQLDEA KLRFAAAEGD HVTFLNVYKG FIQSNKSSKW CHKNFINYHA MRKVIEVREQ LKRITQRLGI GLKSCEGDIQ
601: AVKKAITAGF FANAARLEPF SHNGMYKTLR TSQEVYIHPS SVLFRVNPKF IVYHSLVSTD RQYMRNVITI DPSWLTEAAP HFYQKQLHSS IPQ

Best Arabidopsis Sequence Match ( AT4G18465.1 )
(BLAST)

001: MAFWKPGTEK PRFEEDGEGG IVFMSNNLAS SSSSSYGYAN IEKQRQRLPV YKYRTEILYL VENHATTIIV GETGSGKTTQ IPQYLKEAGW AEGGRVIACT
101: QPRRLAVQAV SARVAEEMGV NLGEEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMID EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKTM SNFFNSSKKR HAPEGSTPGP KLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQEDIET AIKLLEEEAH
301: SNQKNSSGLL PLPLYSGLSR SEQELIFTPT PRGKRKVILS TNIAETSLTL EGVVYVIDSG FSKQKFYNPI SDIESLVVAP ISKASARQRS GRAGRVRPGK
401: CYRLYTEDYF LNQMPGEGIP EMQRSNLVST VIQLKALGID NILGFDWPAP PSSEAMIRAL EVLYSLQILD DDAKLTSPTG FQVAELPLDP MISKMILASS
501: ELGCSHEIIT IAAVLSVQSV WIIARGVQKE QDEAKLRFAA AEGDHVTFLN VYKGFLESKK PTQWCYKNFL NYQSMKKVVE IRDQLKRIAR RLGITLKSCD
601: GDMEAVRKAV TAGFFANACR LEPHSNGVYK TIRGSEEVYI HPSSVLFRVN PKWVVYQSIV STERQYMRNV VTINPSWLTE VAPHFYQNRQ NAMSF

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 [Source:UniProtKB/Swiss-Prot;Acc:F4JRJ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.