Factsheet for Solyc03g115390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0335000-00	Rice	cytosol, nucleus	35.2	87.19
PGSC0003DMT400063370	Potato	nucleus	99.23	85.9
KRH69386	Soybean	cytosol	23.1	79.85
GSMUA_Achr4P23370_001	Banana	nucleus	65.68	79.6
Zm00001d049980_P001	Maize	plasma membrane	59.52	77.51
KRH12910	Soybean	cytosol, nucleus	62.49	76.24
KRH54662	Soybean	nucleus	86.91	75.53
VIT_17s0000g06950.t01	Wine grape	nucleus	86.36	74.48
Solyc12g017700.1.1	Tomato	nucleus	69.97	71.78
KRH40933	Soybean	cytosol	47.3	70.61
KRH74752	Soybean	nucleus	76.13	67.05
TraesCS4D01G362600.1	Wheat	nucleus	77.12	67.02
TraesCS4B01G374800.1	Wheat	nucleus	77.01	66.92
KXG30390	Sorghum	nucleus	76.79	66.73
EES02741	Sorghum	nucleus	76.46	66.44
HORVU4Hr1G088270.17	Barley	mitochondrion	74.04	62.31
Solyc01g079250.2.1	Tomato	nucleus	39.05	49.1
Solyc09g097820.2.1	Tomato	nucleus	34.76	45.6
Solyc09g008120.2.1	Tomato	nucleus	33.66	43.04
Solyc12g089010.1.1	Tomato	nucleus	37.62	42.22
Solyc05g015040.2.1	Tomato	nucleus	30.8	40.0
Solyc01g110990.2.1	Tomato	nucleus	44.88	36.72
Solyc07g039550.2.1	Tomato	nucleus	45.21	34.54
Solyc10g076910.1.1	Tomato	nucleus	41.25	29.18
Solyc01g006970.2.1	Tomato	nucleus	26.73	23.57
Solyc04g007510.2.1	Tomato	plastid	26.62	20.97
Solyc01g006710.2.1	Tomato	mitochondrion	26.84	20.96
Solyc01g095710.2.1	Tomato	nucleus	29.48	19.99
Solyc03g118920.2.1	Tomato	mitochondrion, nucleus	26.18	19.82
Solyc07g044930.2.1	Tomato	nucleus	22.99	17.43
Solyc01g103690.2.1	Tomato	nucleus	27.28	17.25
Solyc11g010310.1.1	Tomato	nucleus	26.95	14.37
Solyc04g014210.2.1	Tomato	nucleus	26.29	13.81

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.1.5	Gene3D:3.40.50.300	ncoils:Coil	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605
GO:GO:0000166	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	UniProt:K4BL41	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF117
SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc03g115390.2	EnsemblPlants:Solyc03g115390.2.1
UniParc:UPI0002768958	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:65108844..65124227

Molecular Weight (calculated)

103811.0 Da

IEP (calculated)

5.339

GRAVY (calculated)

-0.599

Length

909 amino acids

Sequence
(BLAST)

001: MVVKDEEDDR RVRRRTSQDQ DDSDNSESEE EILRDQRERE ELERHIRERD AAGTRKLAEP KLTRKEEEEA IRRADALEQD DIGSLRKVSR REYLKKREQK
101: KLEELRDDLE DEQYLFEGVK LTEAEERELR YKKEIYELVK KRSEDTGDMD EYRIPDAYDL EGGVNQEKRF SVASQRYRDP DAAEKMNPFA EQEAWEEHQI
201: GKANLKFGSK DRKSRSDDYQ FVFEDQIEFI KAAVMDGVNV DQEPSTDSIE KTMANSAFEK LQEDRKTLPM YPYRDDLLQA VNDHQVLVIV GETGSGKTTQ
301: IPQYLHEAGY TKRGKIGCTQ PRRVAAMSVA ARVSQEMGVK LGHEVGYSIR FEDCTSEKTI LKYMTDGMLL REFLGEPDLA SYSVIMVDEA HERTLSTDIL
401: FGLVKDISRF RPDLKLLISS ATLDAEKFSD YFDCAPIFKI PGRRFPVEIH YTKAPEADYL DAAVVTALQI HVTQPPGDGD ILIFLTGQEE IETAEEIIKH
501: RIKGLGTKIA ELIICPIYAN LPTELQAKIF EPTPEGARKV VLATNIAETS LTIDGIKYVI DPGFSKMKSY NPRTGMESLL VAPISKASAN QRAGRSGRTG
601: PGKCFRLYTA YNYMNDLEDN TVPEIQRTNL ANVVLSLKSL GIHDLLNFDF MDPPPAEALL KALELLFALS ALNKLGELTK VGRRMAEFPL DPMLSKMIVA
701: SDKYKCSDEI ISIAAMLSVG NSIFYRPKDK QVHADNARMN FHVGNVGDHI ALLKVYSSWR ETNFSTQWCY ENYIQVRSMK RARDIRDQLE GLLERVEIEL
801: TSNDNDYEAI KKAITSGFFP HSAKLQKNGS YRTIKHPQTV NVHPSSGLAQ VLPRWVVYHE LVLTTKEYMR QVTELKPDWL VEIAPHYYQL KDVEDSSSKK
901: MPRGTGRAS

Best Arabidopsis Sequence Match ( AT1G32490.1 )
(BLAST)

0001: MASNDLKTWV SDKLMMLLGY SQAAVVNYLI AMAKKTKSPT ELVGELVDYG FSSSGDTRSF AEEIFARVPR KTAGVNLYQK HEAEAAMLVR KQKTYALLDA
0101: DDDEDEVVVE KKSSVSESRK SDKGKKRFRK KSGQSDESDG EVAVREDSRH VRRKVSEEDD GSESEEERVR DQKEREELEQ HLKDRDTART RKLTEQTLSK
0201: KEKEEAVRRA NALEKDDLYS LRKVSRQEYL KKREQKKLDE LRDEIEDEQY LFGGEKLTET ELREFRYKKE LYDLVKKRTQ DEDNVEEYRI PDAYDQEGGV
0301: DQEKRFSVAV QRYRDLDSTE KMNPFAEQEA WEDHQIGKAT LKFGAKNKQA SDDYQFVFED QINFIKESVM AGENYEDAMD AKQKSQDLAE KTALEELQEV
0401: RRSLPIYTYR DQLLKAVEEH QVLVIVGDTG SGKTTQIPQY LHEAGYTKRG KVGCTQPRRV AAMSVAARVA QEMGVKLGHE VGYSIRFEDC TSDKTVLKYM
0501: TDGMLLRELL GEPDLASYSV VIVDEAHERT LSTDILFGLV KDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINYTSA PEADYMDAAI
0601: VTILTIHVRE PLGDILVFFT GQEEIETAEE ILKHRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK
0701: MKSYNPRTGM ESLLITPISK ASATQRAGRA GRTSPGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKSLELL
0801: FALGALNKLG ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGGSIFYR PKDKQVHADN ARMNFHTGNV GDHIALLKVY SSWKETNFST
0901: QWCYENYIQV RSMKRARDIR DQLEGLLERV EIDISSNLNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK
1001: EYMRQVTELK PEWLIELAPH YYQLKDVEDA ASKKMPKGAG KAAM

Arabidopsis Description

ESP3ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.