Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 5
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0028g01050.t01 | Wine grape | nucleus | 71.39 | 69.54 |
| KRH73592 | Soybean | nucleus | 63.14 | 65.15 |
| KRH14525 | Soybean | nucleus | 62.39 | 64.26 |
| TraesCS3B01G337600.3 | Wheat | nucleus | 59.55 | 59.75 |
| Os01t0767700-01 | Rice | nucleus | 60.8 | 59.61 |
| EES01523 | Sorghum | nucleus | 59.3 | 59.5 |
| TraesCS3A01G298900.1 | Wheat | nucleus | 58.22 | 59.4 |
| GSMUA_Achr5P02110_001 | Banana | mitochondrion | 55.21 | 58.79 |
| CDY10756 | Canola | nucleus | 52.54 | 57.85 |
| TraesCS3D01G302800.2 | Wheat | plastid | 59.72 | 56.2 |
| HORVU3Hr1G074660.7 | Barley | plastid | 59.13 | 55.65 |
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 59.05 | 54.46 |
| AT2G30800.1 | Thale cress | nucleus | 57.88 | 53.43 |
| Bra021665.1-P | Field mustard | nucleus | 57.88 | 53.18 |
| CDX97797 | Canola | nucleus | 56.96 | 52.9 |
| CDY29644 | Canola | nucleus | 57.38 | 52.64 |
| Bra018293.1-P | Field mustard | plasma membrane, vacuole | 57.21 | 51.97 |
| CDY10215 | Canola | nucleus | 52.71 | 49.22 |
| AT1G06670.1 | Thale cress | nucleus | 53.21 | 40.48 |
| Solyc01g006970.2.1 | Tomato | nucleus | 28.44 | 33.07 |
| Solyc01g079250.2.1 | Tomato | nucleus | 18.27 | 30.29 |
| Solyc04g007510.2.1 | Tomato | plastid | 28.44 | 29.55 |
| Solyc01g006710.2.1 | Tomato | mitochondrion | 28.36 | 29.21 |
| Solyc05g015040.2.1 | Tomato | nucleus | 16.51 | 28.29 |
| Solyc09g097820.2.1 | Tomato | nucleus | 16.01 | 27.71 |
| Solyc03g118920.2.1 | Tomato | mitochondrion, nucleus | 27.44 | 27.39 |
| Solyc09g008120.2.1 | Tomato | nucleus | 16.18 | 27.29 |
| Solyc12g017700.1.1 | Tomato | nucleus | 17.6 | 23.81 |
| Solyc12g089010.1.1 | Tomato | nucleus | 16.01 | 23.7 |
| Solyc01g103690.2.1 | Tomato | nucleus | 27.86 | 23.23 |
| Solyc03g115390.2.1 | Tomato | nucleus | 17.43 | 22.99 |
| Solyc01g110990.2.1 | Tomato | nucleus | 18.77 | 20.25 |
| Solyc07g039550.2.1 | Tomato | nucleus | 18.85 | 18.99 |
| Solyc10g076910.1.1 | Tomato | nucleus | 17.43 | 16.26 |
| Solyc01g095710.2.1 | Tomato | nucleus | 18.02 | 16.11 |
| Solyc11g010310.1.1 | Tomato | nucleus | 16.85 | 11.85 |
| Solyc04g014210.2.1 | Tomato | nucleus | 16.76 | 11.62 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:1.25.40.20 | Gene3D:3.30.1370.50 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:Ankyrin_rpt-contain_dom |
| InterPro:Ankyrin_rpt-contain_sf | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006396 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001374 | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR020683 | InterPro:IPR036770 |
| InterPro:IPR036867 | UniProt:K4CEQ1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF01424 |
| PFAM:PF04408 | PFAM:PF07717 | PFscan:PS50297 | PFscan:PS51061 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR18934 | PANTHER:PTHR18934:SF100 | InterPro:R3H_DEXH_helicase | InterPro:R3H_dom | InterPro:R3H_dom_sf | SMART:SM00393 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF48403 | SUPFAM:SSF52540 | SUPFAM:SSF82708 |
| EnsemblPlantsGene:Solyc07g044930.2 | EnsemblPlants:Solyc07g044930.2.1 | UniParc:UPI000276C7F6 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7:-:57971438..57984891
Molecular Weight (calculated)
132877.0 Da
IEP (calculated)
6.849
GRAVY (calculated)
-0.360
Length
1199 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASTAPSSSS SGVGKKRQKK GQKQQEVTNV AESTRIRVAQ VLEQFRVSND EVYTFESNLS NRDRAAVHML CRKMGMKSKS SGRGDQRRIS IFKTKQNTDT
0101: MKGKDVLSCF KFSEEAKYAL QDLFTRYPPG DGETNEPVVG KHSKKFDKLR GKKDDMFCKP VISTSEIAKR VESFASRIEK SPNMRQITLQ RSKLPIASFK
0201: DAITSTIESN QVVLISGETG CGKTTQVPQF ILDHMWGKGE TCKIVCTQPR RISAISVSER ISAERGESVG DTVGYKIRME SRGGKQSSIM FCTNGILLRV
0301: LITNGSASFN KEAPGKMGKD PISDLTHIIV DEIHERDRYS DFMLAILRDL LPSYPNLRLV LMSATLDAER FSKYFGGCPV IRVPGFTYPV KTFYLEDVLS
0401: IVKSTKNNHL DSTSSTVMPE ESILTEEYKV ALDEAINLAF SDDDLDPLLD LISSEGGPKI FNYQHSLSGV TPLMVLAGKG RVGDICMLLS FGADCHLRAN
0501: DGKTALDWAE QENQTQVVEI IKEHMEKSSS SCEEQQHLLD KYLSTVDPEL IDDVLIEQLL KKICIDSEDG AILVFLPGWE DINRTRERLR ASHYFNDQSK
0601: FSVIPLHSMV PSVEQKKVFR HPPPGCRKIV LSTNIAETAI TIDDVVYVID SGRMKEKSYD PYNNVSTLQS SWVSKASAKQ REGRAGRCQP GICYHLYSKL
0701: RAASLPDFQV PEIKRIPIEE LCLQVKLLNP DCKIEEFLQK TLDPPVYETI RNAIIVLQDI GALSFDEKLT ELGERLGSLP VHPLTSKMLL ISILLNCLDP
0801: ALTMACASDY RDPFTLPMLP NEKKKAAAAK AELASWYGGR SDQLAVVAAF EGWKSAKETG QESRFCSKYF LSSGTMHMLS GMRKQLASEL LRNGFIPGDG
0901: SSCNLNAQDP GILHAVLVAG LYPMVGRLLP PLKNNKKSVI ETAGGDKVRL SPHSTNFKLS FQKFYDQPLI AYDEITRGDG GLLIRNCSVI GPLPLLLLAT
1001: EIVVAPGNED DDDDNDDDES DYEDADEDNG EEGNIKADLS EAHQGEKIMS SPDNTVKVIV DRWIPFESTA LDVAQIYCLR ERLAAAILFK VTHPGKVLPE
1101: VLAASINAMG CILSYNGMSG ISLPHEPVDS LTTMVGATEI GQSDPGWNNR MDMNPNIRHQ HPNMHQQRGG GIHVSKGSSA HRGTMQRGHS KRKRGNGPY
0101: MKGKDVLSCF KFSEEAKYAL QDLFTRYPPG DGETNEPVVG KHSKKFDKLR GKKDDMFCKP VISTSEIAKR VESFASRIEK SPNMRQITLQ RSKLPIASFK
0201: DAITSTIESN QVVLISGETG CGKTTQVPQF ILDHMWGKGE TCKIVCTQPR RISAISVSER ISAERGESVG DTVGYKIRME SRGGKQSSIM FCTNGILLRV
0301: LITNGSASFN KEAPGKMGKD PISDLTHIIV DEIHERDRYS DFMLAILRDL LPSYPNLRLV LMSATLDAER FSKYFGGCPV IRVPGFTYPV KTFYLEDVLS
0401: IVKSTKNNHL DSTSSTVMPE ESILTEEYKV ALDEAINLAF SDDDLDPLLD LISSEGGPKI FNYQHSLSGV TPLMVLAGKG RVGDICMLLS FGADCHLRAN
0501: DGKTALDWAE QENQTQVVEI IKEHMEKSSS SCEEQQHLLD KYLSTVDPEL IDDVLIEQLL KKICIDSEDG AILVFLPGWE DINRTRERLR ASHYFNDQSK
0601: FSVIPLHSMV PSVEQKKVFR HPPPGCRKIV LSTNIAETAI TIDDVVYVID SGRMKEKSYD PYNNVSTLQS SWVSKASAKQ REGRAGRCQP GICYHLYSKL
0701: RAASLPDFQV PEIKRIPIEE LCLQVKLLNP DCKIEEFLQK TLDPPVYETI RNAIIVLQDI GALSFDEKLT ELGERLGSLP VHPLTSKMLL ISILLNCLDP
0801: ALTMACASDY RDPFTLPMLP NEKKKAAAAK AELASWYGGR SDQLAVVAAF EGWKSAKETG QESRFCSKYF LSSGTMHMLS GMRKQLASEL LRNGFIPGDG
0901: SSCNLNAQDP GILHAVLVAG LYPMVGRLLP PLKNNKKSVI ETAGGDKVRL SPHSTNFKLS FQKFYDQPLI AYDEITRGDG GLLIRNCSVI GPLPLLLLAT
1001: EIVVAPGNED DDDDNDDDES DYEDADEDNG EEGNIKADLS EAHQGEKIMS SPDNTVKVIV DRWIPFESTA LDVAQIYCLR ERLAAAILFK VTHPGKVLPE
1101: VLAASINAMG CILSYNGMSG ISLPHEPVDS LTTMVGATEI GQSDPGWNNR MDMNPNIRHQ HPNMHQQRGG GIHVSKGSSA HRGTMQRGHS KRKRGNGPY
0001: MGNKRFRSDN NAGKPTSVEA TRIWATKVIE DFRASGNEVY TFEHNLSNNE RGVIHQMCRK MGIQSKSSGR GEQRRLSIFK SRHKNGNKNE ANEKSNKEKL
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK
Arabidopsis Description
HVT1DExH-box ATP-dependent RNA helicase DExH6 [Source:UniProtKB/Swiss-Prot;Acc:F4INY4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.