Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10756 | Canola | nucleus | 56.7 | 66.85 |
| CDX97797 | Canola | nucleus | 63.78 | 63.44 |
| CDY29644 | Canola | nucleus | 64.49 | 63.35 |
| AT1G06670.1 | Thale cress | nucleus | 72.59 | 59.14 |
| KRH73592 | Soybean | nucleus | 48.75 | 53.87 |
| KRH14525 | Soybean | nucleus | 48.44 | 53.44 |
| VIT_12s0028g01050.t01 | Wine grape | nucleus | 51.17 | 53.37 |
| Solyc07g044930.2.1 | Tomato | nucleus | 49.22 | 52.71 |
| EES01523 | Sorghum | nucleus | 47.04 | 50.54 |
| TraesCS3B01G337600.3 | Wheat | nucleus | 46.88 | 50.38 |
| TraesCS3A01G298900.1 | Wheat | nucleus | 45.95 | 50.21 |
| GSMUA_Achr5P02110_001 | Banana | mitochondrion | 43.54 | 49.64 |
| Os01t0767700-01 | Rice | nucleus | 46.96 | 49.3 |
| TraesCS3D01G302800.2 | Wheat | plastid | 47.04 | 47.41 |
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 47.27 | 46.69 |
| HORVU3Hr1G074660.7 | Barley | plastid | 46.26 | 46.62 |
| CDX84588 | Canola | plastid, vacuole | 25.08 | 31.11 |
| CDX74059 | Canola | nucleus | 6.39 | 31.06 |
| CDX79642 | Canola | nucleus, vacuole | 25.0 | 31.01 |
| CDY68405 | Canola | nucleus | 15.58 | 29.85 |
| CDX95715 | Canola | cytosol | 15.97 | 28.28 |
| CDX83337 | Canola | cytosol | 15.89 | 28.22 |
| CDY57512 | Canola | nucleus | 24.92 | 28.19 |
| CDY17694 | Canola | nucleus | 24.92 | 28.19 |
| CDX74061 | Canola | cytosol | 7.01 | 28.04 |
| CDY11413 | Canola | nucleus | 15.65 | 27.99 |
| CDX76626 | Canola | nucleus | 15.65 | 27.99 |
| CDY34567 | Canola | nucleus | 14.25 | 27.6 |
| CDY40601 | Canola | nucleus, plastid | 25.31 | 27.52 |
| CDX93688 | Canola | plastid | 25.23 | 27.46 |
| CDY36075 | Canola | nucleus | 14.25 | 27.15 |
| CDX98799 | Canola | mitochondrion | 24.22 | 26.95 |
| CDX70187 | Canola | mitochondrion | 24.14 | 26.82 |
| CDY11762 | Canola | nucleus | 14.41 | 26.28 |
| CDX90112 | Canola | nucleus | 14.41 | 26.24 |
| CDX78859 | Canola | nucleus | 14.25 | 26.22 |
| CDX99466 | Canola | nucleus | 14.17 | 26.0 |
| CDY02818 | Canola | nucleus | 13.32 | 25.75 |
| CDX85017 | Canola | cytosol, plastid | 14.33 | 25.48 |
| CDY16154 | Canola | nucleus, plastid | 14.33 | 25.45 |
| CDY23338 | Canola | cytosol | 8.18 | 24.88 |
| CDY37024 | Canola | cytosol, mitochondrion | 6.23 | 24.69 |
| CDY32702 | Canola | nucleus | 13.24 | 24.57 |
| CDY60185 | Canola | nucleus | 16.43 | 24.56 |
| CDY40514 | Canola | nucleus | 16.36 | 24.39 |
| CDY26898 | Canola | nucleus | 16.82 | 20.69 |
| CDY32278 | Canola | endoplasmic reticulum | 16.82 | 20.69 |
| CDY29164 | Canola | nucleus | 21.96 | 19.8 |
| CDY39917 | Canola | nucleus | 21.73 | 19.75 |
| CDX83624 | Canola | nucleus | 16.04 | 18.48 |
| CDY13640 | Canola | nucleus | 16.12 | 18.4 |
| CDY63687 | Canola | nucleus, plastid | 15.11 | 17.48 |
| CDY23802 | Canola | nucleus | 6.78 | 16.57 |
| CDX85676 | Canola | nucleus | 15.89 | 16.35 |
| CDX91151 | Canola | nucleus | 15.81 | 16.25 |
| CDY48353 | Canola | nucleus | 15.03 | 15.78 |
| CDY34159 | Canola | nucleus | 15.03 | 15.6 |
| CDX81170 | Canola | plastid | 16.74 | 12.2 |
| CDX78376 | Canola | plastid | 16.59 | 12.12 |
| CDX96996 | Canola | nucleus | 16.36 | 11.87 |
| CDX69841 | Canola | plastid | 16.12 | 11.71 |
| CDY51663 | Canola | nucleus | 0.55 | 11.11 |
| CDX91491 | Canola | nucleus | 0.55 | 11.11 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:1.25.40.20 | Gene3D:3.30.1370.50 | Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078F6U1 |
| UniProt:A0A078F6U1 | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | EnsemblPlants:CDY10215 | ProteinID:CDY10215 | ProteinID:CDY10215.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00032037001 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001374 | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR020683 | InterPro:IPR036770 |
| InterPro:IPR036867 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF01424 | PFAM:PF04408 |
| PFAM:PF07717 | PFscan:PS50297 | PFscan:PS51061 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 |
| PANTHER:PTHR18934:SF100 | InterPro:R3H_dom | InterPro:R3H_dom_sf | SMART:SM00393 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM00847 | SUPFAM:SSF48403 | SUPFAM:SSF52540 | SUPFAM:SSF82708 | UniParc:UPI0004EDF216 | SEG:seg |
Description
BnaC05g04580DDExH-box ATP-dependent RNA helicase DExH2 [Source:Projected from Arabidopsis thaliana (AT1G06670) UniProtKB/Swiss-Prot;Acc:F4IDQ6]
Coordinates
chrLK032001:+:605464..611327
Molecular Weight (calculated)
142760.0 Da
IEP (calculated)
6.612
GRAVY (calculated)
-0.456
Length
1284 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGKKMNRDQN TELSDSSRIW ASKFLKEFRA SGRDSHTFDN SLTNDVRGII HQMCRKMGIR SKSSGKGDQR RLTIFKRAPR PSSVSGSEKK KLKRVSFPPE
0101: AEPILQDLFT RYPPCDGDTR ATSLGVYTGH FGRQRKWKDD FFGKPQMNKD DVRNKAASLS SRLANDKDFR EIFGARTKLP IASFREAITS AVESNQVVLI
0201: AGETGCGKTT QVPQYLLDHM WYSKRESCKI ICTQPRRISA ISVSERISWE RGESIGNNVG YKVRLNSKGG RQSSVVFCTN GILLRVLVGK GGGSCVPDIT
0301: HIIVDEIHER DCYSDFMLAI IRDFLPSNPH LRLILMSATL DAERFSEYFG GCPVVQVPGF TYPVRTFYLE DVLSVLKSEK NHHLISDDSS IPDVKRDIKD
0401: EDEVALDEAI EMAWTNDEFE ALLDLVSSEG SHEVYNYRQS STWLTPLMVF AGKGRVNNVC KLLALGADCK LKSKEGMTAL ELAEKEKQFE AAQIIREHTD
0501: NVQSNSQQEQ VLLDKYMATI NPEEVDVGLI VNLMRKLCRD SEAGAVLVFL PGWEEISKTK ERLLANPYFA DSAKYNIICL HSRVPVEEQK RVFKRPPQGC
0601: RKIVLATNIA ESAVTIDDVV YVIDSGRMKE KSYDPYNDVS TLESSWVSKA NAKQREGRAG RCQPGICYHL YSKLRAASLP EYRIPEVRRM PVDELCLQVK
0701: MLDPSCNVND FLQKLMDPPV DRSIANALTT LKDIGALTPQ EELTELGQKF GQLPVHPRIC KMLYFAILVS CLDPALILAC AADTKDPFTM PLEPGERRKA
0801: VAAKRELASL YGGHSDHLAI VAAFHYWKDA KRNGHSQEFC SQYFVSPNAM KMLDNMRDKL QGELERHGLI PRNDSNCNLN AHDPGILRAV VAVGLYPMVG
0901: KMCPPSMNNN RRSLVETITG AKVRVLSLSN MSSREEDEAL IVFDEITRGD WDVHIRESTT LRTIPLLLFA GEIAVAPTES CDADKKETVG DVMDIDKVGG
1001: RPGDKIMHAP ENSVKVVVDR WLPFEMTALE IAQIYILRER LVASILFKVK HPQENLPPHL GASMYAIACI LSFDGLSKPS VPTVDMEPVA SAVDATGLGD
1101: DPNTAMGESL SAKNLDLASE QPELKLAKES DLGNMEESLP SNPVNGNELP DTNTVPAEDA SAGEEPEKKR SRSSKKRKSA KNLDLGNMEV KETFDLANNG
1201: NDQTELKPAS KEKEIIPANH TNGNEQPDPQ MESASAASEP EKKQSRSKRR KLANSSSSGN NTEENVPSTN NGNELLSSGL TEAA
0101: AEPILQDLFT RYPPCDGDTR ATSLGVYTGH FGRQRKWKDD FFGKPQMNKD DVRNKAASLS SRLANDKDFR EIFGARTKLP IASFREAITS AVESNQVVLI
0201: AGETGCGKTT QVPQYLLDHM WYSKRESCKI ICTQPRRISA ISVSERISWE RGESIGNNVG YKVRLNSKGG RQSSVVFCTN GILLRVLVGK GGGSCVPDIT
0301: HIIVDEIHER DCYSDFMLAI IRDFLPSNPH LRLILMSATL DAERFSEYFG GCPVVQVPGF TYPVRTFYLE DVLSVLKSEK NHHLISDDSS IPDVKRDIKD
0401: EDEVALDEAI EMAWTNDEFE ALLDLVSSEG SHEVYNYRQS STWLTPLMVF AGKGRVNNVC KLLALGADCK LKSKEGMTAL ELAEKEKQFE AAQIIREHTD
0501: NVQSNSQQEQ VLLDKYMATI NPEEVDVGLI VNLMRKLCRD SEAGAVLVFL PGWEEISKTK ERLLANPYFA DSAKYNIICL HSRVPVEEQK RVFKRPPQGC
0601: RKIVLATNIA ESAVTIDDVV YVIDSGRMKE KSYDPYNDVS TLESSWVSKA NAKQREGRAG RCQPGICYHL YSKLRAASLP EYRIPEVRRM PVDELCLQVK
0701: MLDPSCNVND FLQKLMDPPV DRSIANALTT LKDIGALTPQ EELTELGQKF GQLPVHPRIC KMLYFAILVS CLDPALILAC AADTKDPFTM PLEPGERRKA
0801: VAAKRELASL YGGHSDHLAI VAAFHYWKDA KRNGHSQEFC SQYFVSPNAM KMLDNMRDKL QGELERHGLI PRNDSNCNLN AHDPGILRAV VAVGLYPMVG
0901: KMCPPSMNNN RRSLVETITG AKVRVLSLSN MSSREEDEAL IVFDEITRGD WDVHIRESTT LRTIPLLLFA GEIAVAPTES CDADKKETVG DVMDIDKVGG
1001: RPGDKIMHAP ENSVKVVVDR WLPFEMTALE IAQIYILRER LVASILFKVK HPQENLPPHL GASMYAIACI LSFDGLSKPS VPTVDMEPVA SAVDATGLGD
1101: DPNTAMGESL SAKNLDLASE QPELKLAKES DLGNMEESLP SNPVNGNELP DTNTVPAEDA SAGEEPEKKR SRSSKKRKSA KNLDLGNMEV KETFDLANNG
1201: NDQTELKPAS KEKEIIPANH TNGNEQPDPQ MESASAASEP EKKQSRSKRR KLANSSSSGN NTEENVPSTN NGNELLSSGL TEAA
0001: MAKKKKDTKH TRLCEATGAW ATKVLEDFRA SGNDSYVFEQ QLTNSERGII HQMCRTMGLR SKSNGSGEER RLSLFKGDGI SKSDKRRMYE ARNQKEKEGD
0101: GISKSYSKHR YETRFQKAGG IRKTRISPKK LKCVSFPPEA KAVLHDLFTR YPPCDGDTTG TSLGIYTTGN VNSNWKDDFF KKPHMTKHDI ENNVVSLSSR
0201: LKKERHFREI FEARSKLPIA SFRDAIISAV ESNQVVLIAG ETGCGKTTQV PQYLLDHMWH SKKEACKIIC TQPRRISAIS VSDRISWERG ETIGRTVGYK
0301: VRLQSEGGRE SSVVFCTNGI LLRVLIGKGV NSSVPDITHI IVDEIHERDS YSDFMLMILR DLLPSNPHLR LILMSATLDA ERFSEYFGGC PVVRVPGFTY
0401: PVRTFFLDDA LSVLNSDKNS HLLSAVKRDF KDEDKVSLDE AIDLAWTNDE FDCLVDLVSS EGSHEAYNYQ NSTTGLTPLM VFAGKGRVSD VCKLLSVGAD
0501: CTLKSKEGIT ALELAEKENQ FETAQIIREH AGNIQSNSQQ AQDLLDKYMA TIKPEEVDVG LIVKLMKKIC SDSKDGAILV FLPGWEEISK TKEKLLDDRF
0601: FAHSAKFIIL CLHSRVPAEE QKKVFNRPPR GCRKIVLATN IAESAVTIDD VVYVIDSGRM KEKSYDPYND VSTLQSSWVS KANAKQRAGR AGRCQAGICY
0701: HLYSKLRAAS LPEYRVPEVM RMPVDELCLQ VKMLDPNCNV NDFLQKLMDP PVAQSIENAL IILKDIGALT PEEELTELGQ KFGQLPVHPR ISKMIYFAIL
0801: VNCLDPALIL ACAADEKDPF TMPLSPGDRK KAAAAKHELA SLYGDHSDHL ATVAAFQCWK NAKASGQAKE FCSKYFISQV VMKRLDDLCR KLQGELNRHG
0901: VIPSSSSNCS LNAHDPGILR AVIAVGLYPM LGRMCPLSKN RTRSVIETIA GAKVRVPSLS NNVDMSSTKF DEALIVFDEI TRGDWGVVIR SCTVLPTIPV
1001: LLFSREIAVS TTESYDAVKS DDEEDHKVGN VGDAMDIDKE VGRPGEKIML GPENSVKVVV DRWLPFKVTA FEIAQMYILR ERLMASILFK VKHPKENLPP
1101: HLGASMYAIA SVLSYDSLAQ SSVQTVAVQP ITSVVDATSP RDDIPSTNPN ELREHDPNTT PMGSKLELAN KLGLGNMEES LPSNFADGNE QPDPNTSPVE
1201: DVSAATKQKK MQSESKRCKS LNNVDLGNIE ENFGNMEENP PSDLAIGNEQ TLPKLASNLD MGNMEENTPS DLANGNKKKE PKSVSKLDLG SEKVSIPSNL
1301: VNGNEQHDLN IAPGEDASAA KQPEKKRSRS KKRKSGNNLD LGKMEKSKPS DLANENEQTE PKSANNLDLG NMKENTPSDL ANENEQTELR LPNNSDYGNM
1401: EESLPLNLAN GDEQPDPTTA PMEAAKQPKK KRSRSKKCKS VNNLDLGNME ENKPSDLANG NEQKDPESVN RLDPGKEKES IPSNLVSGNE QPDSNTAPAK
1501: KPKKKKRKLA NNFDSVNNME EKMPSTNVLS QGNKSGLIEE KPSIPSDQ
0101: GISKSYSKHR YETRFQKAGG IRKTRISPKK LKCVSFPPEA KAVLHDLFTR YPPCDGDTTG TSLGIYTTGN VNSNWKDDFF KKPHMTKHDI ENNVVSLSSR
0201: LKKERHFREI FEARSKLPIA SFRDAIISAV ESNQVVLIAG ETGCGKTTQV PQYLLDHMWH SKKEACKIIC TQPRRISAIS VSDRISWERG ETIGRTVGYK
0301: VRLQSEGGRE SSVVFCTNGI LLRVLIGKGV NSSVPDITHI IVDEIHERDS YSDFMLMILR DLLPSNPHLR LILMSATLDA ERFSEYFGGC PVVRVPGFTY
0401: PVRTFFLDDA LSVLNSDKNS HLLSAVKRDF KDEDKVSLDE AIDLAWTNDE FDCLVDLVSS EGSHEAYNYQ NSTTGLTPLM VFAGKGRVSD VCKLLSVGAD
0501: CTLKSKEGIT ALELAEKENQ FETAQIIREH AGNIQSNSQQ AQDLLDKYMA TIKPEEVDVG LIVKLMKKIC SDSKDGAILV FLPGWEEISK TKEKLLDDRF
0601: FAHSAKFIIL CLHSRVPAEE QKKVFNRPPR GCRKIVLATN IAESAVTIDD VVYVIDSGRM KEKSYDPYND VSTLQSSWVS KANAKQRAGR AGRCQAGICY
0701: HLYSKLRAAS LPEYRVPEVM RMPVDELCLQ VKMLDPNCNV NDFLQKLMDP PVAQSIENAL IILKDIGALT PEEELTELGQ KFGQLPVHPR ISKMIYFAIL
0801: VNCLDPALIL ACAADEKDPF TMPLSPGDRK KAAAAKHELA SLYGDHSDHL ATVAAFQCWK NAKASGQAKE FCSKYFISQV VMKRLDDLCR KLQGELNRHG
0901: VIPSSSSNCS LNAHDPGILR AVIAVGLYPM LGRMCPLSKN RTRSVIETIA GAKVRVPSLS NNVDMSSTKF DEALIVFDEI TRGDWGVVIR SCTVLPTIPV
1001: LLFSREIAVS TTESYDAVKS DDEEDHKVGN VGDAMDIDKE VGRPGEKIML GPENSVKVVV DRWLPFKVTA FEIAQMYILR ERLMASILFK VKHPKENLPP
1101: HLGASMYAIA SVLSYDSLAQ SSVQTVAVQP ITSVVDATSP RDDIPSTNPN ELREHDPNTT PMGSKLELAN KLGLGNMEES LPSNFADGNE QPDPNTSPVE
1201: DVSAATKQKK MQSESKRCKS LNNVDLGNIE ENFGNMEENP PSDLAIGNEQ TLPKLASNLD MGNMEENTPS DLANGNKKKE PKSVSKLDLG SEKVSIPSNL
1301: VNGNEQHDLN IAPGEDASAA KQPEKKRSRS KKRKSGNNLD LGKMEKSKPS DLANENEQTE PKSANNLDLG NMKENTPSDL ANENEQTELR LPNNSDYGNM
1401: EESLPLNLAN GDEQPDPTTA PMEAAKQPKK KRSRSKKCKS VNNLDLGNME ENKPSDLANG NEQKDPESVN RLDPGKEKES IPSNLVSGNE QPDSNTAPAK
1501: KPKKKKRKLA NNFDSVNNME EKMPSTNVLS QGNKSGLIEE KPSIPSDQ
Arabidopsis Description
NIHDExH-box ATP-dependent RNA helicase DExH2 [Source:UniProtKB/Swiss-Prot;Acc:F4IDQ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.