CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009414.1-P	Field mustard	mitochondrion	99.57	99.48
CDX70187	Canola	mitochondrion	99.57	99.39
AT5G04895.1	Thale cress	mitochondrion	94.28	93.71
KRH44757	Soybean	plastid	80.42	79.93
Solyc01g006710.2.1	Tomato	mitochondrion	78.25	77.58
PGSC0003DMT400055091	Potato	mitochondrion	77.82	77.15
Os03t0748800-01	Rice	mitochondrion	75.74	76.0
GSMUA_Achr4P07530_001	Banana	mitochondrion	76.69	75.97
KXG37551	Sorghum	nucleus, vacuole	75.39	75.52
TraesCS5D01G397600.1	Wheat	nucleus	74.87	75.13
TraesCS5B01G392800.1	Wheat	nucleus	74.87	75.13
TraesCS5A01G387700.2	Wheat	golgi, nucleus	74.78	74.72
HORVU5Hr1G094990.5	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	74.35	74.61
Zm00001d034013_P002	Maize	golgi, mitochondrion, vacuole	75.48	72.64
CDX93688	Canola	plastid	58.93	57.63
CDY40601	Canola	nucleus, plastid	58.84	57.49
CDY17694	Canola	nucleus	55.46	56.39
CDY57512	Canola	nucleus	55.37	56.3
CDX84588	Canola	plastid, vacuole	40.99	45.7
CDX79642	Canola	nucleus, vacuole	40.81	45.51
CDY68405	Canola	nucleus	20.45	35.22
CDX74059	Canola	nucleus	7.97	34.85
CDX74061	Canola	cytosol	9.53	34.27
CDX76626	Canola	nucleus	19.93	32.03
CDY11413	Canola	nucleus	19.93	32.03
CDX83337	Canola	cytosol	20.02	31.95
CDX95715	Canola	cytosol	19.93	31.72
CDY23338	Canola	cytosol	10.92	29.86
CDX90112	Canola	nucleus	18.02	29.5
CDY11762	Canola	nucleus	17.94	29.4
CDY36075	Canola	nucleus	16.98	29.08
CDY34567	Canola	nucleus	16.64	28.96
CDX78859	Canola	nucleus	17.5	28.94
CDX99466	Canola	nucleus	17.5	28.86
CDY37024	Canola	cytosol, mitochondrion	7.97	28.4
CDY10756	Canola	nucleus	26.6	28.19
CDX85017	Canola	cytosol, plastid	17.42	27.84
CDY16154	Canola	nucleus, plastid	17.42	27.8
CDY60185	Canola	nucleus	20.02	26.89
CDY40514	Canola	nucleus	19.76	26.48
CDY32702	Canola	nucleus	15.77	26.3
CDY02818	Canola	nucleus	14.9	25.9
CDY10215	Canola	nucleus	26.95	24.22
CDX97797	Canola	nucleus	26.86	24.01
CDY29644	Canola	nucleus	27.12	23.95
CDY39917	Canola	nucleus	29.12	23.78
CDY29164	Canola	nucleus	29.29	23.74
CDY26898	Canola	nucleus	20.71	22.89
CDY32278	Canola	endoplasmic reticulum	20.71	22.89
CDX83624	Canola	nucleus	21.92	22.69
CDY13640	Canola	nucleus	22.01	22.58
CDX91151	Canola	nucleus	22.27	20.58
CDX85676	Canola	nucleus	22.18	20.51
CDY63687	Canola	nucleus, plastid	19.41	20.18
CDY23802	Canola	nucleus	8.84	19.43
CDY48353	Canola	nucleus	18.2	17.17
CDY34159	Canola	nucleus	18.28	17.06
CDX81170	Canola	plastid	22.1	14.46
CDX78376	Canola	plastid	21.92	14.4
CDX69841	Canola	plastid	21.58	14.09
CDX96996	Canola	nucleus	21.49	14.02
CDY51663	Canola	nucleus	0.61	11.11
CDX91491	Canola	nucleus	0.61	11.11

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078EDB9	EnsemblPlants:CDX98799
ProteinID:CDX98799	ProteinID:CDX98799.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00106893001	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014720	InterPro:P-loop_NTPase	PFAM:PF00035	PFAM:PF00270	PFAM:PF00271
PFAM:PF04408	PFAM:PF07717	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF103
SMART:SM00358	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	SUPFAM:SSF54768
UniParc:UPI0004EE10C6	InterPro:dsRBD_dom	SEG:seg	:	:	:

Description

BnaC09g50360D

Coordinates

chrLK031907:+:54506..59971

Molecular Weight (calculated)

129866.0 Da

IEP (calculated)

8.974

GRAVY (calculated)

-0.351

Length

1154 amino acids

Sequence
(BLAST)

0001: MRFTKRISFF LWQATKLPTR SLPRNPSLCR SYIVGAPISS GDVVTGLSYG QIRRRFIGYT AEQFSDDEYE CEFEEHKASS SVANVDEWKW KLGILLANDS
0101: EREIVSRDKR DRRDYEQISN LAKRMGLYSE IYGKVVVASK VPLPNYRPDL DDKRPQREVV LPLSLQRRVE GLLQEHLDRQ QLNSGKANES EADSHPPKQT
0201: EELPDESSDA FLDGSVMEKV LQRRSMRMRN MQRAWQESPE GRTMLGFRKS LPSFKDKERL LQAIARNQVI VVSGETGCGK TTQLPQYILE SEIESGRGAF
0301: CNIICTQPRR ISAMAVAERV SAERGEPLGE TVGFKVRLEG MRGKNTQLLF CTSGILLRRL LSDRNLNGIT HVFVDEIHER GMNEDFLIIV LKELLPRRPD
0401: LRLVLMSATL NAELFSNYFG GAPTIHIPGF THPVKAHFLE DVLEMTGYKL TSFNQVDDYG QEKTWKTQKQ LMPRKRKNQI TSLVEEALSK STFESYSSRT
0501: RDSLSSWMPD CVGFNLIEAV LCHICRKERP GAVLVFLTGW DDISSLRDQI KAHPLLGDPN RVLLLMCHGS MATAEQRLIF ERAPPNIRKI VLATNMAEAS
0601: ITINDVVFVV DCGKAKETTY DALNNTPCLL PSWISQASAR QRRGRAGRLL PGECYHLYPK CVYEAFSEYQ LPELLRTPLN SLCLQIKSLQ VESIAGFLSA
0701: ALQAPEPLTV QNAIGFLKMI GALDEKENLT DLGKLLSILP VDPKLGKMLI MGAIFHCFDP ILTIVSGLSV RDPFLLPQEK KDLALSAKLR FSAKDYSDHM
0801: ALVRAFEGWK NAEREGSAYE YCWRNFLSAQ TLQAIHSLRK QFNYILKEAG LVHDDSALNN KLSHNQSLVR AVICSGLFPG IASVVHRETS MSFKTMDDGQ
0901: VSLYANSVNS RFPTIPYPWL VFGEKVKVNA VLIRDSTGVP DSSLILFGGS LSTGVQVGHL KMLDGYIDFF MDPNLADSYV KLKEELNKLL QKKANPSVDI
1001: HKEGKYLMLA VQELVAGDQC EGRFVFGRDT KRASQPQLAG ENNKLSKDGT NPKSLLQTLL MRAGHSPPKY KTKHLKTNEF RALVEFKGMQ FVGKPQRNKT
1101: LAEKDAAVEA LAWLTHTSDN STDQYSGDAD SPPDVTDNML KLLGGKRRRR SKGK

Best Arabidopsis Sequence Match ( AT5G04895.1 )
(BLAST)

0001: MRFTKRISLF LGQTTRIHSR SLLGNPTLCR SYIVGPVSTS SPAFLISSRN GDGVTGLYYP IRRRFIGHTA EQFSDDEYEC EFEEHKASSS VANVDEWKWK
0101: LGILLANDSE QEIVSRDKRD RRDYEQISNL AKRMGLYSEI YGKVVVASKV PLPNYRPDLD DKRPQREVVL PLSLQRRVEG LLQEHLDSQQ LSSGKANECV
0201: ADSQPPKQTE ELPDENSDSF LDGSVMEKVL QRRSMRMRNM QRTWQESPEG RTMLEFRKTL PSFKDKERLL QAIARNQVIV VSGETGCGKT TQLPQYILES
0301: EIESGRGAFC NIICTQPRRI SAMAVSERVS AERGEPLGET VGFKVRLEGM RGKNTHLLFC TSGILLRRLL SDRNLNGVTH VFVDEIHERG MNEDFLIIVL
0401: KELLPRRPDL RLVLMSATLN AELFSNYYGG APTIHIPGFT HPVKAHFLED VLEITGYKLT SFNQVDDYGQ EKTWKTQKQL MPRKRKNQIT TLVEEALSKS
0501: NFESYNSRTR DSLSSWMPDC IGFNLIEAVL CHICRKERPG AVLVFLTGWD DIRSLSDQIK AHPLLGDPNR VLLLMCHGSM ATAEQRLIFE RAPPNIRKIV
0601: LATNMAEASI TINDVVFVVD CGKAKETTYD ALNNTPCLLP SWISQASARQ RRGRAGRLFP GECYHLYPKC VYDAFAEYQL PELLRTPLNS LCLQIKSLQV
0701: ESIAEFLSAA LQAPESLAVQ NAIGFLKMIG ALDEKENLTD LGKLLSILPV DPKLGKMLIM GAIFRCFDPI LTIVSGLSVR DPFLLPQDKK DLALSAKLRF
0801: SAKDYSDHMA LVRAFEGWKD AEREGSAYEF CWRNFLSAQT LQAIHSLRKQ FNYILKEAGL VHDDLALNNK LSHNQSLVRA VICSGLFPGI ASVVHRETSM
0901: SFKTMDDGQV SLYANSVNSR FPTIPYPWLV FGEKVKVNAV LIRDSTGVPD SSLILFGGSL STGVQVGHLK MLDGYIDFFM DPNLAESYVK LKEELDKLLQ
1001: KKLEDPSMDI HKEGKYLMLA VQELVAGDQC EGRFVFGRDT KRPSQPQIGE NKHSKDGTNP KSLLQTLLMR AGHSPPKYKT KHLKTNEFRA LVEFKGMQFV
1101: GKPQRNKTLA EKDAAVEALA WLTHTSDNST GQHNEDADSP PDVTDNMLKL LGGRRRRSKG K

Arabidopsis Description

ATP-dependent RNA helicase A-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FF84]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.