Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, golgi, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG37551 | Sorghum | nucleus, vacuole | 92.99 | 96.79 |
| Os03t0748800-01 | Rice | mitochondrion | 88.16 | 91.91 |
| TraesCS5D01G397600.1 | Wheat | nucleus | 86.91 | 90.61 |
| TraesCS5B01G392800.1 | Wheat | nucleus | 86.74 | 90.43 |
| TraesCS5A01G387700.2 | Wheat | golgi, nucleus | 86.82 | 90.13 |
| HORVU5Hr1G094990.5 | Barley | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 85.9 | 89.57 |
| GSMUA_Achr4P07530_001 | Banana | mitochondrion | 77.56 | 79.83 |
| KRH44757 | Soybean | plastid | 74.06 | 76.49 |
| AT5G04895.1 | Thale cress | mitochondrion | 73.56 | 75.97 |
| Bra009414.1-P | Field mustard | mitochondrion | 72.73 | 75.5 |
| CDX98799 | Canola | mitochondrion | 72.64 | 75.48 |
| CDX70187 | Canola | mitochondrion | 72.73 | 75.43 |
| PGSC0003DMT400055091 | Potato | mitochondrion | 73.14 | 75.34 |
| Solyc01g006710.2.1 | Tomato | mitochondrion | 73.14 | 75.34 |
| KRH13104 | Soybean | mitochondrion | 23.1 | 64.72 |
| Zm00001d045376_P001 | Maize | cytosol | 15.1 | 54.85 |
| Zm00001d040082_P003 | Maize | plastid | 56.46 | 48.12 |
| Zm00001d019056_P001 | Maize | nucleus | 7.51 | 45.0 |
| Zm00001d032735_P001 | Maize | plastid | 37.61 | 43.62 |
| Zm00001d028923_P002 | Maize | nucleus | 19.68 | 32.73 |
| Zm00001d047601_P006 | Maize | nucleus | 19.52 | 30.27 |
| Zm00001d049980_P001 | Maize | plasma membrane | 17.43 | 29.94 |
| Zm00001d045147_P015 | Maize | nucleus | 17.35 | 29.46 |
| Zm00001d011963_P002 | Maize | plasma membrane | 17.68 | 29.4 |
| Zm00001d003655_P006 | Maize | nucleus, plastid | 29.77 | 25.07 |
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 26.86 | 24.77 |
| Zm00001d015893_P001 | Maize | nucleus, plasma membrane | 22.44 | 21.76 |
| Zm00001d039380_P001 | Maize | nucleus | 16.35 | 20.7 |
| Zm00001d031581_P002 | Maize | nucleus | 21.18 | 19.18 |
| Zm00001d006459_P003 | Maize | plastid | 20.1 | 17.9 |
| Zm00001d017967_P003 | Maize | nucleus | 18.85 | 17.67 |
| Zm00001d022176_P002 | Maize | nucleus | 21.6 | 14.78 |
| PGSC0003DMT400041647 | Potato | cytosol | 2.09 | 6.81 |
Protein Annotations
| Gene3D:1.20.120.1080 | EntrezGene:100279262 | Gene3D:3.30.160.20 | Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A1D6L4C4 |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014720 | ProteinID:ONM09241.1 | InterPro:P-loop_NTPase |
| PFAM:PF00035 | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF103 | SMART:SM00358 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM00847 | SUPFAM:SSF52540 | SUPFAM:SSF54768 | UniParc:UPI0008447936 | EnsemblPlantsGene:Zm00001d034013 | EnsemblPlants:Zm00001d034013_P002 |
| EnsemblPlants:Zm00001d034013_T002 | InterPro:dsRBD_dom | SEG:seg | : | : | : |
Description
DEA(D/H)-box RNA helicase family protein
Coordinates
chr1:-:281170428..281177105
Molecular Weight (calculated)
135267.0 Da
IEP (calculated)
8.808
GRAVY (calculated)
-0.344
Length
1199 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRRGLRRGLG ILLVPLPHAP SRLPPISLAA LLPRRFNGFS RHSFCSFPVG ERAVEQFSDD EYDHEYEDLR VRATSSSAGT RMIPRCDLHR NSFVFFVCSA
0101: PRNDFLLHVQ PSSSVANIDE WRWKLSMLQR NAEEQEIISR DRRDRRDYDQ IANLAKRMGL YSEMYGRVVV ASKVPLPNYR PDLDDKRPQR EVVIPLGLQR
0201: RVEGLVQEHL DRAFLPLNKC GGNTKNGSDM TENANLDEQH DSLLDRSVME KILQRKSIRM RNFQRSWQES PEGAKMLEFR RSLPADKEKE RLLAAIARNQ
0301: VIVISGETGC GKTTQLPQFV LESEIESGRG AFCNIICTQP RRISAMAVAE RVSTERGENL GESVGYKVRL EGIKGKDTHL LFCTSGILLR RLLSDRNLNG
0401: VTHVFVDEIH ERGMNEDFLL IVLKELLSRR RDLRLILMSA TLNAELFSSY FGGAPTIHIP GFTHPVRAHF LEDILERSGY KLTSSNQLDD YGQDKVWKTQ
0501: RQLLPRKRKN QITTLVEEAL KNSSFEIYGS RTRDSLVNWN PDCIGFNLIE AVLCHICRKE RPGAVLVFMT GWDDISCLKD QLKAHPLLGD PNRVFLLACH
0601: GSMATSEQRL IFEKPPPNVR KVVLATNMAE ASITINDIVF VVDCGKAKET TYDALNNTPC LLPSWISKAS ARQRRGRAGR VQPGECYHLY PRCVYDAFAD
0701: YQLPELLRTP LNSLCLQIKS LQVGSIGEFL SAALQPPEPR AVENAVEFLK MIGALDGNEN LTDLGRYLSM LPVDPKLGKM LIMGAVFRCI DPILTVVAGL
0801: SVRDPFLLPQ EKKDVSLLIS AISLAGTAKA RFSAKDYSDH MALVRAYEGW KDAEREGSAY EYCWRNFLSS QTLQAIHSLR KQFSYILKDS GLIDSDGNTN
0901: NSLSHNQSLV RGIICSGLFP GIASVVHRES SMSFKTMDDG QVLLYANSVN AKYQTIPYPW LVFGEKVKVN AVFIRDSTGV SDSILILFGG AVAKGGMAGH
1001: LKMLDGYIDF FMDPSLSECY LQLKEELDKL IQQKLEDPNF DIHKEGKYIL FAVQELAAGD LCEGRFVFGR ETSRARLRSP EDDGKSNLIK DGMNPKSLLQ
1101: TLLMRAGHTP PRYKTKHLKT NEFRAVVEFK GMQFVGKPKR NKQLAERDAA IEALGWLTQT SGVKAPDEND DDSPLDLTDS MLKLLTRPRR HSKNSSRKR
0101: PRNDFLLHVQ PSSSVANIDE WRWKLSMLQR NAEEQEIISR DRRDRRDYDQ IANLAKRMGL YSEMYGRVVV ASKVPLPNYR PDLDDKRPQR EVVIPLGLQR
0201: RVEGLVQEHL DRAFLPLNKC GGNTKNGSDM TENANLDEQH DSLLDRSVME KILQRKSIRM RNFQRSWQES PEGAKMLEFR RSLPADKEKE RLLAAIARNQ
0301: VIVISGETGC GKTTQLPQFV LESEIESGRG AFCNIICTQP RRISAMAVAE RVSTERGENL GESVGYKVRL EGIKGKDTHL LFCTSGILLR RLLSDRNLNG
0401: VTHVFVDEIH ERGMNEDFLL IVLKELLSRR RDLRLILMSA TLNAELFSSY FGGAPTIHIP GFTHPVRAHF LEDILERSGY KLTSSNQLDD YGQDKVWKTQ
0501: RQLLPRKRKN QITTLVEEAL KNSSFEIYGS RTRDSLVNWN PDCIGFNLIE AVLCHICRKE RPGAVLVFMT GWDDISCLKD QLKAHPLLGD PNRVFLLACH
0601: GSMATSEQRL IFEKPPPNVR KVVLATNMAE ASITINDIVF VVDCGKAKET TYDALNNTPC LLPSWISKAS ARQRRGRAGR VQPGECYHLY PRCVYDAFAD
0701: YQLPELLRTP LNSLCLQIKS LQVGSIGEFL SAALQPPEPR AVENAVEFLK MIGALDGNEN LTDLGRYLSM LPVDPKLGKM LIMGAVFRCI DPILTVVAGL
0801: SVRDPFLLPQ EKKDVSLLIS AISLAGTAKA RFSAKDYSDH MALVRAYEGW KDAEREGSAY EYCWRNFLSS QTLQAIHSLR KQFSYILKDS GLIDSDGNTN
0901: NSLSHNQSLV RGIICSGLFP GIASVVHRES SMSFKTMDDG QVLLYANSVN AKYQTIPYPW LVFGEKVKVN AVFIRDSTGV SDSILILFGG AVAKGGMAGH
1001: LKMLDGYIDF FMDPSLSECY LQLKEELDKL IQQKLEDPNF DIHKEGKYIL FAVQELAAGD LCEGRFVFGR ETSRARLRSP EDDGKSNLIK DGMNPKSLLQ
1101: TLLMRAGHTP PRYKTKHLKT NEFRAVVEFK GMQFVGKPKR NKQLAERDAA IEALGWLTQT SGVKAPDEND DDSPLDLTDS MLKLLTRPRR HSKNSSRKR
0001: MRFTKRISLF LGQTTRIHSR SLLGNPTLCR SYIVGPVSTS SPAFLISSRN GDGVTGLYYP IRRRFIGHTA EQFSDDEYEC EFEEHKASSS VANVDEWKWK
0101: LGILLANDSE QEIVSRDKRD RRDYEQISNL AKRMGLYSEI YGKVVVASKV PLPNYRPDLD DKRPQREVVL PLSLQRRVEG LLQEHLDSQQ LSSGKANECV
0201: ADSQPPKQTE ELPDENSDSF LDGSVMEKVL QRRSMRMRNM QRTWQESPEG RTMLEFRKTL PSFKDKERLL QAIARNQVIV VSGETGCGKT TQLPQYILES
0301: EIESGRGAFC NIICTQPRRI SAMAVSERVS AERGEPLGET VGFKVRLEGM RGKNTHLLFC TSGILLRRLL SDRNLNGVTH VFVDEIHERG MNEDFLIIVL
0401: KELLPRRPDL RLVLMSATLN AELFSNYYGG APTIHIPGFT HPVKAHFLED VLEITGYKLT SFNQVDDYGQ EKTWKTQKQL MPRKRKNQIT TLVEEALSKS
0501: NFESYNSRTR DSLSSWMPDC IGFNLIEAVL CHICRKERPG AVLVFLTGWD DIRSLSDQIK AHPLLGDPNR VLLLMCHGSM ATAEQRLIFE RAPPNIRKIV
0601: LATNMAEASI TINDVVFVVD CGKAKETTYD ALNNTPCLLP SWISQASARQ RRGRAGRLFP GECYHLYPKC VYDAFAEYQL PELLRTPLNS LCLQIKSLQV
0701: ESIAEFLSAA LQAPESLAVQ NAIGFLKMIG ALDEKENLTD LGKLLSILPV DPKLGKMLIM GAIFRCFDPI LTIVSGLSVR DPFLLPQDKK DLALSAKLRF
0801: SAKDYSDHMA LVRAFEGWKD AEREGSAYEF CWRNFLSAQT LQAIHSLRKQ FNYILKEAGL VHDDLALNNK LSHNQSLVRA VICSGLFPGI ASVVHRETSM
0901: SFKTMDDGQV SLYANSVNSR FPTIPYPWLV FGEKVKVNAV LIRDSTGVPD SSLILFGGSL STGVQVGHLK MLDGYIDFFM DPNLAESYVK LKEELDKLLQ
1001: KKLEDPSMDI HKEGKYLMLA VQELVAGDQC EGRFVFGRDT KRPSQPQIGE NKHSKDGTNP KSLLQTLLMR AGHSPPKYKT KHLKTNEFRA LVEFKGMQFV
1101: GKPQRNKTLA EKDAAVEALA WLTHTSDNST GQHNEDADSP PDVTDNMLKL LGGRRRRSKG K
0101: LGILLANDSE QEIVSRDKRD RRDYEQISNL AKRMGLYSEI YGKVVVASKV PLPNYRPDLD DKRPQREVVL PLSLQRRVEG LLQEHLDSQQ LSSGKANECV
0201: ADSQPPKQTE ELPDENSDSF LDGSVMEKVL QRRSMRMRNM QRTWQESPEG RTMLEFRKTL PSFKDKERLL QAIARNQVIV VSGETGCGKT TQLPQYILES
0301: EIESGRGAFC NIICTQPRRI SAMAVSERVS AERGEPLGET VGFKVRLEGM RGKNTHLLFC TSGILLRRLL SDRNLNGVTH VFVDEIHERG MNEDFLIIVL
0401: KELLPRRPDL RLVLMSATLN AELFSNYYGG APTIHIPGFT HPVKAHFLED VLEITGYKLT SFNQVDDYGQ EKTWKTQKQL MPRKRKNQIT TLVEEALSKS
0501: NFESYNSRTR DSLSSWMPDC IGFNLIEAVL CHICRKERPG AVLVFLTGWD DIRSLSDQIK AHPLLGDPNR VLLLMCHGSM ATAEQRLIFE RAPPNIRKIV
0601: LATNMAEASI TINDVVFVVD CGKAKETTYD ALNNTPCLLP SWISQASARQ RRGRAGRLFP GECYHLYPKC VYDAFAEYQL PELLRTPLNS LCLQIKSLQV
0701: ESIAEFLSAA LQAPESLAVQ NAIGFLKMIG ALDEKENLTD LGKLLSILPV DPKLGKMLIM GAIFRCFDPI LTIVSGLSVR DPFLLPQDKK DLALSAKLRF
0801: SAKDYSDHMA LVRAFEGWKD AEREGSAYEF CWRNFLSAQT LQAIHSLRKQ FNYILKEAGL VHDDLALNNK LSHNQSLVRA VICSGLFPGI ASVVHRETSM
0901: SFKTMDDGQV SLYANSVNSR FPTIPYPWLV FGEKVKVNAV LIRDSTGVPD SSLILFGGSL STGVQVGHLK MLDGYIDFFM DPNLAESYVK LKEELDKLLQ
1001: KKLEDPSMDI HKEGKYLMLA VQELVAGDQC EGRFVFGRDT KRPSQPQIGE NKHSKDGTNP KSLLQTLLMR AGHSPPKYKT KHLKTNEFRA LVEFKGMQFV
1101: GKPQRNKTLA EKDAAVEALA WLTHTSDNST GQHNEDADSP PDVTDNMLKL LGGRRRRSKG K
Arabidopsis Description
ATP-dependent RNA helicase A-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FF84]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.