Factsheet for PGSC0003DMT400055091

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g006710.2.1	Tomato	mitochondrion	97.77	97.77
KRH44757	Soybean	plastid	81.19	81.4
GSMUA_Achr4P07530_001	Banana	mitochondrion	78.18	78.11
AT5G04895.1	Thale cress	mitochondrion	77.84	78.04
Bra009414.1-P	Field mustard	mitochondrion	77.41	78.01
CDX70187	Canola	mitochondrion	77.32	77.85
CDX98799	Canola	mitochondrion	77.15	77.82
Os03t0748800-01	Rice	mitochondrion	76.2	77.13
KXG37551	Sorghum	nucleus, vacuole	75.6	76.39
TraesCS5D01G397600.1	Wheat	nucleus	75.34	76.26
TraesCS5B01G392800.1	Wheat	nucleus	75.34	76.26
TraesCS5A01G387700.2	Wheat	golgi, nucleus	75.34	75.93
HORVU5Hr1G094990.5	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	74.91	75.83
Zm00001d034013_P002	Maize	golgi, mitochondrion, vacuole	75.34	73.14
PGSC0003DMT400055058	Potato	nucleus	36.86	50.23
PGSC0003DMT400038620	Potato	cytosol, nucleus, plastid	11.08	36.96
PGSC0003DMT400023284	Potato	nucleus	20.02	32.23
PGSC0003DMT400084916	Potato	nucleus	21.22	30.84
PGSC0003DMT400046188	Potato	nucleus	16.84	28.41
PGSC0003DMT400005723	Potato	nucleus	19.59	27.74
PGSC0003DMT400009842	Potato	mitochondrion	8.85	27.32
PGSC0003DMT400039875	Potato	nucleus	19.85	25.03
PGSC0003DMT400063370	Potato	nucleus	21.39	23.71
PGSC0003DMT400056692	Potato	nucleus	21.65	22.09
PGSC0003DMT400018531	Potato	nucleus	22.25	20.16
PGSC0003DMT400000297	Potato	nucleus	19.85	17.29
PGSC0003DMT400041805	Potato	nucleus	19.93	14.3
PGSC0003DMT400060759	Potato	nucleus	19.5	13.13
PGSC0003DMT400041647	Potato	cytosol	2.15	6.81
PGSC0003DMT400063366	Potato	plastid	0.34	2.8

Protein Annotations

Gene3D:1.20.120.1080	EntrezGene:102592008	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014720	UniProt:M1BXC5	InterPro:P-loop_NTPase
PFAM:PF00035	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	EnsemblPlantsGene:PGSC0003DMG400021378
PGSC:PGSC0003DMG400021378	EnsemblPlants:PGSC0003DMT400055091	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF103
SMART:SM00358	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	SUPFAM:SSF54768
UniParc:UPI000294F96A	RefSeq:XP_006348421.1	InterPro:dsRBD_dom	SEG:seg	:	:

Description

ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400021378]

Coordinates

chr1:+:2538088..2556723

Molecular Weight (calculated)

131624.0 Da

IEP (calculated)

8.419

GRAVY (calculated)

-0.341

Length

1164 amino acids

Sequence
(BLAST)

0001: MHSRIGFLLA CTKRRSSSST LLLSTLFSSH QNRKIFAACH RRILIGSDVS KAYFFEESNL RGLGQLRGFC RYPGIAALEQ FSDDEYECDY ESHPASSSVA
0101: NVDEWKWKLS LLLRNEKDQE IVSRDKRDRR DHEQISNLAK RMGLYSEIYG KVVVVSKVPL PNYRPDLDDK RPQREVVIPL SLQRRVEGLL QEHIDRTQLS
0201: SGKDENILDV TKSSDIVTDA NMDENPDSFL DGSVMEKVLQ RRSLRMRNMQ RGWQESPDGN KVLEFRKSLP AFKEKERLLQ AIARNQVVVI SGETGCGKTT
0301: QLPQYILESE IESGRGAFCS IICTQPRRIS ALAVAERVAT ERGEPLGDSV GYKVRLEGVK GKNTHLLFCT SGILLRRLLS DRNLDGITHV FVDEIHERGM
0401: NEDFLLIVLK DLLPRRPDLR LILMSATLNA ELFSSYFGGA PMIHIPGFTY PVRENFLEDV LEITGYKLTS FNQIDDYGQE KMWKTQKQLA PRKKKNQITA
0501: LVEDAVEKSN FENYSPRARD SLACWAPDCI GFNLIEAVLC HICRKERPGA VLVFMTGWED ISCLRDKLKA HPLLGDPNRV LVLTCHGSMA TSEQKLIFEK
0601: PPQNVRKIVL ATNMAEASIT INDVVFVVDC GKAKETTYDA LNNTPCLLPS WISQASARQR RGRAGRVQPG ECYHLYPRCV YEAFAEYQLP ELLRTPLNSL
0701: CLQIKSLQVG SIAEFLSSAL QPPESLAVQN AIQFLKMIGA LDENENLTHL GKFLAILPVD PKLGKMLIMG TIFRCFDPVL TIVAGLSVRD PFLLPQDKKD
0801: LAGTAKSRFS AKDYSDHMAL VRAYEGWKDA EREGSAYEYC WRNFLSAQTL QAIHSLRKQF IFILKDAGLL DADTAINNKL SYNQSLVRAV ICSGLYPGIS
0901: SVVNRETSMS FKTMDDGQVF LYANSVNARY QTIPYPWLVF GEKVKVNTVF IRDSTGVSDS IVILFGSALD CGDMAGHLKM LGGYIEFFMD PTLADCYIKL
1001: KEELDILLQK KLQDPEVDIH KEGKYLMLAV QELVSGDQSE GRFVFGRENK KPKDSDTDRF TRDGTNPKSL LQTLLMRASH SPPKYKTKHL KTNEFRALAE
1101: FKGMQFVGKP KRNKALAEKD AAIEALAWLT QTSEKNHDED DKSPPDVTDN MLKLLGKRRR SKRR

Best Arabidopsis Sequence Match ( AT5G04895.1 )
(BLAST)

0001: MRFTKRISLF LGQTTRIHSR SLLGNPTLCR SYIVGPVSTS SPAFLISSRN GDGVTGLYYP IRRRFIGHTA EQFSDDEYEC EFEEHKASSS VANVDEWKWK
0101: LGILLANDSE QEIVSRDKRD RRDYEQISNL AKRMGLYSEI YGKVVVASKV PLPNYRPDLD DKRPQREVVL PLSLQRRVEG LLQEHLDSQQ LSSGKANECV
0201: ADSQPPKQTE ELPDENSDSF LDGSVMEKVL QRRSMRMRNM QRTWQESPEG RTMLEFRKTL PSFKDKERLL QAIARNQVIV VSGETGCGKT TQLPQYILES
0301: EIESGRGAFC NIICTQPRRI SAMAVSERVS AERGEPLGET VGFKVRLEGM RGKNTHLLFC TSGILLRRLL SDRNLNGVTH VFVDEIHERG MNEDFLIIVL
0401: KELLPRRPDL RLVLMSATLN AELFSNYYGG APTIHIPGFT HPVKAHFLED VLEITGYKLT SFNQVDDYGQ EKTWKTQKQL MPRKRKNQIT TLVEEALSKS
0501: NFESYNSRTR DSLSSWMPDC IGFNLIEAVL CHICRKERPG AVLVFLTGWD DIRSLSDQIK AHPLLGDPNR VLLLMCHGSM ATAEQRLIFE RAPPNIRKIV
0601: LATNMAEASI TINDVVFVVD CGKAKETTYD ALNNTPCLLP SWISQASARQ RRGRAGRLFP GECYHLYPKC VYDAFAEYQL PELLRTPLNS LCLQIKSLQV
0701: ESIAEFLSAA LQAPESLAVQ NAIGFLKMIG ALDEKENLTD LGKLLSILPV DPKLGKMLIM GAIFRCFDPI LTIVSGLSVR DPFLLPQDKK DLALSAKLRF
0801: SAKDYSDHMA LVRAFEGWKD AEREGSAYEF CWRNFLSAQT LQAIHSLRKQ FNYILKEAGL VHDDLALNNK LSHNQSLVRA VICSGLFPGI ASVVHRETSM
0901: SFKTMDDGQV SLYANSVNSR FPTIPYPWLV FGEKVKVNAV LIRDSTGVPD SSLILFGGSL STGVQVGHLK MLDGYIDFFM DPNLAESYVK LKEELDKLLQ
1001: KKLEDPSMDI HKEGKYLMLA VQELVAGDQC EGRFVFGRDT KRPSQPQIGE NKHSKDGTNP KSLLQTLLMR AGHSPPKYKT KHLKTNEFRA LVEFKGMQFV
1101: GKPQRNKTLA EKDAAVEALA WLTHTSDNST GQHNEDADSP PDVTDNMLKL LGGRRRRSKG K

Arabidopsis Description

ATP-dependent RNA helicase A-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FF84]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.