Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400041805 | Potato | nucleus | 100.0 | 22.63 |
| PGSC0003DMT400060759 | Potato | nucleus | 74.66 | 15.85 |
| Os03t0748800-01 | Rice | mitochondrion | 6.81 | 2.17 |
| TraesCS5D01G397600.1 | Wheat | nucleus | 6.81 | 2.17 |
| TraesCS5B01G392800.1 | Wheat | nucleus | 6.81 | 2.17 |
| KXG37551 | Sorghum | nucleus, vacuole | 6.81 | 2.17 |
| TraesCS5A01G387700.2 | Wheat | golgi, nucleus | 6.81 | 2.16 |
| PGSC0003DMT400055091 | Potato | mitochondrion | 6.81 | 2.15 |
| HORVU5Hr1G094990.5 | Barley | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 6.54 | 2.09 |
| Zm00001d034013_P002 | Maize | golgi, mitochondrion, vacuole | 6.81 | 2.09 |
| GSMUA_Achr4P07530_001 | Banana | mitochondrion | 6.54 | 2.06 |
| PGSC0003DMT400000297 | Potato | nucleus | 3.27 | 0.9 |
| PGSC0003DMT400023284 | Potato | nucleus | 1.63 | 0.83 |
| PGSC0003DMT400039875 | Potato | nucleus | 1.63 | 0.65 |
| PGSC0003DMT400018531 | Potato | nucleus | 2.18 | 0.62 |
| PGSC0003DMT400055058 | Potato | nucleus | 0.82 | 0.35 |
| PGSC0003DMT400084916 | Potato | nucleus | 0.54 | 0.25 |
| PGSC0003DMT400005723 | Potato | nucleus | 0.54 | 0.24 |
| PGSC0003DMT400063370 | Potato | nucleus | 0.54 | 0.19 |
| PGSC0003DMT400038620 | Potato | cytosol, nucleus, plastid | 0.0 | 0.0 |
| PGSC0003DMT400046188 | Potato | nucleus | 0.0 | 0.0 |
| PGSC0003DMT400056692 | Potato | nucleus | 0.0 | 0.0 |
| PGSC0003DMT400063366 | Potato | plastid | 0.0 | 0.0 |
| PGSC0003DMT400009842 | Potato | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.120.1750 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:E3_UB_ligase_RBR | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 |
| InterPro:IBR_dom | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR013087 | InterPro:IPR036612 | InterPro:KH_dom_type_1_sf |
| UniProt:M1BBP7 | PFAM:PF01485 | EnsemblPlantsGene:PGSC0003DMG402016146 | PGSC:PGSC0003DMG402016146 | EnsemblPlants:PGSC0003DMT400041647 | ScanProsite:PS00028 |
| ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR11685 | PANTHER:PTHR11685:SF206 | SMART:SM00647 | SUPFAM:SSF54791 |
| SUPFAM:SSF57850 | UniParc:UPI000295EF5B | InterPro:Znf_C2H2_type | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| SEG:seg | : | : | : | : | : |
Description
ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG402016146]
Coordinates
chr11:-:2566545..2568824
Molecular Weight (calculated)
41308.7 Da
IEP (calculated)
6.260
GRAVY (calculated)
-0.167
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGKIVDHVD ITPKVVQLLF SREGSNIMRT IQRETGTYIY FDKHSLLVSI FGSLDNVDRA QQRFIGSLLA LHENKQLEVH LRGGLLPHDL MKRVVQTFGP
101: DLSALKEKVP GAEFSLNTKR HCIYINGTKD MKQSVEDIIS EIAQRSFPIQ TTGDDADCPV CLCELEDPYK LEACCHVFCR TCLLEQCESA IKSREGFPMC
201: CLHQGCAEPI LLADLKSLLS IEKLEELFRA SLGAFVAANG STYRFCPSPD CPSVYRIADP DMVGAPFACG ACYVETCTSC HLEYHPYLSC ETYQKVKDDP
301: DCSLEEWSKG KDNVKKCPVC RFTIEKVDGC NHIECKCGKH VCWVCLLFFD TSDNCYDHLR SVHRSIT
101: DLSALKEKVP GAEFSLNTKR HCIYINGTKD MKQSVEDIIS EIAQRSFPIQ TTGDDADCPV CLCELEDPYK LEACCHVFCR TCLLEQCESA IKSREGFPMC
201: CLHQGCAEPI LLADLKSLLS IEKLEELFRA SLGAFVAANG STYRFCPSPD CPSVYRIADP DMVGAPFACG ACYVETCTSC HLEYHPYLSC ETYQKVKDDP
301: DCSLEEWSKG KDNVKKCPVC RFTIEKVDGC NHIECKCGKH VCWVCLLFFD TSDNCYDHLR SVHRSIT
0001: MRNSFPPSDG GRSTTDRRQQ SFPSSSTNRY NSRSAQSSPP LNHCTTWNQQ HSQYHNTNFP PNYRRDRAPS SGFSPPVTRA RPNFIVQLLH PAAANSDTKL
0101: SKKQEIESIA LLCEIPEESV HVPQFGCIAA SFSFRQWVDA RSAVVALWDY RLQGRHDFVP ELIPNVVVPS DMDELKDRLR DLFSSHVLSL MENGQGVKKV
0201: RMEIDDKSRQ VASFSSKRGL KFEVFEKKKA LEAERDLVVN RLDEFNNAMK SILRYLIGQD GYEFDVDDED DEDVAVFSLE GAYDWRRIHY LILRECRRLE
0301: DGLPIYAYRR QILKKIHCEQ IMVLIGETGS GKSTQLVQFL ADSGVAASES IVCTQPRKIA AMTLTDRVRE ESSGCYEENT VSCTPTFSST EEISSKVVYM
0401: TDNCLLQHYM KDRSLSGISC VIIDEAHERS LNTDLLLALL RKLLSRRIDL RLVIMSATAD ANQLSQYLFD CGILHVNGRN FPVEIVYSPS GTEENSVVGR
0501: IASYAGDVVK MAVEIHKTEK EGTILAFLTS QAEVEWACER FVAPSAIALP LHGKLSFEEQ FMVFQNYPGR RKVIFATNIA ETSLTIPGVK YVIDSGMVKE
0601: SKYEPRTGMS ILKVCQVSQS SARQRAGRAG RTEPGRCYRL YSKTDFDSMN LNQEPEIRRV HLGVALLRML ALGIDNIAAF EFVDAPVPEA IAMAIQNLVQ
0701: LGAVVEKNGV LELTQEGHCL VKLGLEPKLG KLILGCFRHR MGKEGIVLAA VMANASSIFC RVGNFDDKMK ADRLKVQFCN DNGDLFTLLS VYKEWASLPR
0801: DRRNKWCWEN SLNAKSMRRC EDTVKELEIC IERELTLVSP SYWVWNPNEG TKHDKYLKMV ILASLAENVA MYTGYDQLGY EVALTSQQVQ LHPSCSLLAF
0901: GQKPSWVVFG ELLSIVDQYL VCVTAFDFEA LYMLDPPPPF DASQMDERRL RVKKVVGCSS TVLKRFCGKS NRSLLSIVSR ARSLCSDERI GIQVDVDQNE
1001: IRLYASPLDM EKVSALVNDA LECEKKWMRN ECLEKYLFHG RGQIPIALFG SGAQIKHLEV DQRFLTVDVH YYGDDVVDDR ELLTFLEKKI DGCICSIYKF
1101: AANKQDCDEK EKWGRITFLT PESAMKATEI QKFDFKGSVL KVFPSLSTGG GIFKMPYFSS VTAKIRWPRK ESSGRGCLKC PSGDIHSILG DITSLEIGTN
1201: YVHIQRDQLS NDSILISGLG DLSEAEVLDV LEFRTQRRDL NFFIFRKKYS VQCPSPTACE EELHKRIFAR MSAKNPEPNC VQVQVFEPKE DNYFMRALIK
1301: FDGRLHLEAA KALQELNGEV LPGCLPWQKI KCEQLFQSSI ICSASIYNTV KRQLNVLLAR FERQKGGECC LEPTHNGAYR VKITAYATRP VAEMRRELEE
1401: LLRGKPINHP GFTPRVVQHL MSRDGINLMR KIQQETETYI LLDRHNLTVR ICGTSEKIAK AEQELVQSLM DYHESKQLEI HLRGPEIRPD LMKEVVKRFG
1501: PELQGIKEKV HGVDLKLNTR YHVIQVHGSK EMRQEVQKMV NELAREKSAL GEKPDEIELE CPICLSEVDD GYSLEGCSHL FCKACLLEQF EASMRNFDAF
1601: PILCSHIDCG APIVVADMRA LLSQEKLDEL ISASLSAFVT SSDGKLRFCS TPDCPSIYRV AGPQESGEPF ICGACHSETC TRCHLEYHPL ITCERYKKFK
1701: ENPDLSLKDW AKGKDVKECP ICKSTIEKTD GCNHLQCRCG KHICWTCLDV FTQAEPCYAH LRTIHGGIGL VELGVPEHPV AQPVHRL
0101: SKKQEIESIA LLCEIPEESV HVPQFGCIAA SFSFRQWVDA RSAVVALWDY RLQGRHDFVP ELIPNVVVPS DMDELKDRLR DLFSSHVLSL MENGQGVKKV
0201: RMEIDDKSRQ VASFSSKRGL KFEVFEKKKA LEAERDLVVN RLDEFNNAMK SILRYLIGQD GYEFDVDDED DEDVAVFSLE GAYDWRRIHY LILRECRRLE
0301: DGLPIYAYRR QILKKIHCEQ IMVLIGETGS GKSTQLVQFL ADSGVAASES IVCTQPRKIA AMTLTDRVRE ESSGCYEENT VSCTPTFSST EEISSKVVYM
0401: TDNCLLQHYM KDRSLSGISC VIIDEAHERS LNTDLLLALL RKLLSRRIDL RLVIMSATAD ANQLSQYLFD CGILHVNGRN FPVEIVYSPS GTEENSVVGR
0501: IASYAGDVVK MAVEIHKTEK EGTILAFLTS QAEVEWACER FVAPSAIALP LHGKLSFEEQ FMVFQNYPGR RKVIFATNIA ETSLTIPGVK YVIDSGMVKE
0601: SKYEPRTGMS ILKVCQVSQS SARQRAGRAG RTEPGRCYRL YSKTDFDSMN LNQEPEIRRV HLGVALLRML ALGIDNIAAF EFVDAPVPEA IAMAIQNLVQ
0701: LGAVVEKNGV LELTQEGHCL VKLGLEPKLG KLILGCFRHR MGKEGIVLAA VMANASSIFC RVGNFDDKMK ADRLKVQFCN DNGDLFTLLS VYKEWASLPR
0801: DRRNKWCWEN SLNAKSMRRC EDTVKELEIC IERELTLVSP SYWVWNPNEG TKHDKYLKMV ILASLAENVA MYTGYDQLGY EVALTSQQVQ LHPSCSLLAF
0901: GQKPSWVVFG ELLSIVDQYL VCVTAFDFEA LYMLDPPPPF DASQMDERRL RVKKVVGCSS TVLKRFCGKS NRSLLSIVSR ARSLCSDERI GIQVDVDQNE
1001: IRLYASPLDM EKVSALVNDA LECEKKWMRN ECLEKYLFHG RGQIPIALFG SGAQIKHLEV DQRFLTVDVH YYGDDVVDDR ELLTFLEKKI DGCICSIYKF
1101: AANKQDCDEK EKWGRITFLT PESAMKATEI QKFDFKGSVL KVFPSLSTGG GIFKMPYFSS VTAKIRWPRK ESSGRGCLKC PSGDIHSILG DITSLEIGTN
1201: YVHIQRDQLS NDSILISGLG DLSEAEVLDV LEFRTQRRDL NFFIFRKKYS VQCPSPTACE EELHKRIFAR MSAKNPEPNC VQVQVFEPKE DNYFMRALIK
1301: FDGRLHLEAA KALQELNGEV LPGCLPWQKI KCEQLFQSSI ICSASIYNTV KRQLNVLLAR FERQKGGECC LEPTHNGAYR VKITAYATRP VAEMRRELEE
1401: LLRGKPINHP GFTPRVVQHL MSRDGINLMR KIQQETETYI LLDRHNLTVR ICGTSEKIAK AEQELVQSLM DYHESKQLEI HLRGPEIRPD LMKEVVKRFG
1501: PELQGIKEKV HGVDLKLNTR YHVIQVHGSK EMRQEVQKMV NELAREKSAL GEKPDEIELE CPICLSEVDD GYSLEGCSHL FCKACLLEQF EASMRNFDAF
1601: PILCSHIDCG APIVVADMRA LLSQEKLDEL ISASLSAFVT SSDGKLRFCS TPDCPSIYRV AGPQESGEPF ICGACHSETC TRCHLEYHPL ITCERYKKFK
1701: ENPDLSLKDW AKGKDVKECP ICKSTIEKTD GCNHLQCRCG KHICWTCLDV FTQAEPCYAH LRTIHGGIGL VELGVPEHPV AQPVHRL
Arabidopsis Description
ATP-dependent RNA helicase DEAH11, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P0CE10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.